Wall clock time and date at job start Tue Mar 31 2020 12:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 110.38645 * 2 1 4 4 C 1.54569 * 110.44103 * 237.44272 * 2 1 3 5 5 C 1.54489 * 102.14601 * 214.40773 * 4 2 1 6 6 C 1.52998 * 110.46030 * 134.22486 * 5 4 2 7 7 N 1.46498 * 110.36984 * 256.50728 * 5 4 2 8 8 S 1.65597 * 120.00002 * 287.66458 * 7 5 4 9 9 O 1.42097 * 104.27787 * 179.03278 * 8 7 5 10 10 O 1.42099 * 104.27460 * 306.88887 * 8 7 5 11 11 C 1.81395 * 104.45181 * 62.96192 * 8 7 5 12 12 C 1.52994 * 109.47512 * 172.13528 * 11 8 7 13 13 C 1.52997 * 109.47534 * 180.02562 * 12 11 8 14 14 C 1.50703 * 109.47134 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00301 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00099 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99645 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00373 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47294 * 89.99755 * 18 16 14 20 20 H 1.48499 * 109.47415 * 209.99909 * 18 16 14 21 21 H 1.48504 * 109.47138 * 329.99804 * 18 16 14 22 22 C 1.51332 * 104.82185 * 15.34578 * 5 4 2 23 23 O 1.20836 * 125.09009 * 182.27920 * 22 5 4 24 24 O 1.34061 * 109.81535 * 2.31235 * 22 5 4 25 25 H 1.09008 * 109.47139 * 299.03134 * 1 2 3 26 26 H 1.09004 * 109.47088 * 179.03690 * 1 2 3 27 27 H 1.08994 * 109.47229 * 59.03552 * 1 2 3 28 28 H 1.08993 * 109.47868 * 59.30329 * 3 2 1 29 29 H 1.09004 * 109.46596 * 179.30133 * 3 2 1 30 30 H 1.08998 * 109.46959 * 299.29450 * 3 2 1 31 31 H 1.09002 * 110.86246 * 332.57251 * 4 2 1 32 32 H 1.08998 * 110.86600 * 96.24320 * 4 2 1 33 33 H 1.08995 * 109.47517 * 296.99800 * 6 5 4 34 34 H 1.09004 * 109.46851 * 56.99558 * 6 5 4 35 35 H 1.08997 * 109.46916 * 176.99192 * 6 5 4 36 36 H 0.96996 * 119.99648 * 107.65960 * 7 5 4 37 37 H 1.09000 * 109.47110 * 292.13810 * 11 8 7 38 38 H 1.09004 * 109.47210 * 52.13466 * 11 8 7 39 39 H 1.09000 * 109.47163 * 300.00249 * 12 11 8 40 40 H 1.09004 * 109.46934 * 59.99769 * 12 11 8 41 41 H 1.09001 * 109.46780 * 299.99510 * 13 12 11 42 42 H 1.08990 * 109.47281 * 60.00131 * 13 12 11 43 43 H 0.96996 * 119.99873 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 6 2.0698 -0.7794 -1.2208 5 6 3.3510 -1.4285 -0.6514 6 6 3.4293 -2.9019 -1.0561 7 7 4.5382 -0.7085 -1.1186 8 16 5.0240 -0.8480 -2.6955 9 8 6.1688 -0.0110 -2.7849 10 8 5.1225 -2.2494 -2.9092 11 6 3.6508 -0.1528 -3.6554 12 6 4.0597 -0.0441 -5.1257 13 6 2.9017 0.5429 -5.9352 14 6 3.3043 0.6493 -7.3835 15 1 4.2879 0.3305 -7.6954 16 6 2.4173 1.1545 -8.3103 17 7 1.2197 1.5431 -7.9305 18 14 2.9166 1.2871 -10.1054 19 1 2.5568 0.0322 -10.8133 20 1 2.2072 2.4306 -10.7334 21 1 4.3829 1.5039 -10.1967 22 6 3.2148 -1.3013 0.8504 23 8 4.0415 -1.6595 1.6556 24 8 2.0393 -0.7325 1.1536 25 1 -0.3634 0.4987 0.8986 26 1 -0.3633 -1.0276 -0.0173 27 1 -0.3633 0.5287 -0.8812 28 1 1.6979 1.9576 0.8836 29 1 3.1528 1.4167 0.0125 30 1 1.7182 1.9499 -0.8962 31 1 1.3583 -1.5405 -1.5410 32 1 2.3092 -0.1010 -2.0396 33 1 2.5885 -3.4431 -0.6223 34 1 3.3918 -2.9827 -2.1425 35 1 4.3634 -3.3295 -0.6920 36 1 5.0397 -0.1501 -0.5042 37 1 2.7803 -0.8028 -3.5675 38 1 3.4047 0.8377 -3.2726 39 1 4.9302 0.6059 -5.2136 40 1 4.3058 -1.0346 -5.5085 41 1 2.0309 -0.1070 -5.8473 42 1 2.6560 1.5333 -5.5523 43 1 0.5955 1.8982 -8.5825 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820734617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:40 Heat of formation + Delta-G solvation = -161.793524 kcal Electronic energy + Delta-G solvation = -26447.349742 eV Core-core repulsion = 22619.880412 eV Total energy + Delta-G solvation = -3827.469330 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.86276 -38.14413 -37.27800 -36.36549 -35.86463 -34.85084 -33.74750 -32.31635 -30.76872 -28.20300 -27.89405 -27.23865 -24.66529 -23.74077 -22.06648 -20.64995 -20.38119 -19.32021 -17.85852 -17.27721 -17.20032 -16.67484 -16.40299 -15.95124 -15.72751 -15.08696 -14.74454 -14.55328 -14.35226 -14.25209 -13.77562 -13.54946 -13.18737 -12.93299 -12.72598 -12.64944 -12.48665 -12.38707 -12.16218 -12.10536 -11.98480 -11.94598 -11.78451 -11.60663 -11.44857 -11.28389 -10.98032 -10.90826 -10.84840 -10.51844 -10.33177 -10.05796 -9.94169 -9.45695 -9.20598 -8.47770 -6.13256 -4.16219 0.23013 1.57789 2.65707 2.75139 3.25759 3.32104 3.32459 3.36277 3.70756 3.80722 4.03567 4.20741 4.25891 4.36451 4.48163 4.53061 4.73239 4.97518 5.03264 5.15520 5.16570 5.23808 5.25156 5.30310 5.33549 5.37775 5.51362 5.64542 5.71107 5.72777 5.75560 6.05210 6.13970 6.30703 6.41788 6.57643 6.75752 7.07947 7.46906 7.56283 7.84471 8.24583 8.89789 9.49134 10.97871 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.017265 B = 0.003726 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.401507 B = 7513.691409 C = 8522.057557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.109 3.891 3 C -0.171 4.171 4 C -0.193 4.193 5 C 0.124 3.876 6 C -0.166 4.166 7 N -1.105 6.105 8 S 2.598 3.402 9 O -0.954 6.954 10 O -0.951 6.951 11 C -0.617 4.617 12 C -0.105 4.105 13 C 0.032 3.968 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.493 3.507 23 O -0.438 6.438 24 O -0.333 6.333 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.419 0.581 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.327 -3.071 16.885 17.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.073 3.927 3 C -0.228 4.228 4 C -0.231 4.231 5 C 0.032 3.968 6 C -0.224 4.224 7 N -0.863 5.863 8 S 2.694 3.306 9 O -0.944 6.944 10 O -0.941 6.941 11 C -0.749 4.749 12 C -0.144 4.144 13 C -0.007 4.007 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.197 1.197 22 C 0.329 3.671 23 O -0.319 6.319 24 O -0.249 6.249 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.132 0.868 32 H 0.138 0.862 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.253 0.747 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.465 -3.668 17.052 17.503 hybrid contribution -0.257 0.707 -0.762 1.070 sum -1.721 -2.961 16.290 16.646 Atomic orbital electron populations 1.21920 0.90305 1.03974 1.04022 1.23125 0.96295 0.91754 0.81573 1.22329 1.02139 0.93854 1.04491 1.24284 0.97018 1.02335 0.99500 1.21444 0.86195 0.95631 0.93524 1.22473 1.04320 0.90402 1.05247 1.55753 1.38525 1.61864 1.30140 1.05542 0.76561 0.75395 0.73115 1.93599 1.46222 1.69766 1.84854 1.93591 1.86060 1.30120 1.84335 1.30864 1.18640 1.13105 1.12244 1.21528 1.02702 1.02427 0.87786 1.19058 0.91681 0.96077 0.93841 1.21239 1.00291 1.42298 0.92747 0.92365 1.24998 0.94923 0.95174 0.99139 1.69943 1.06180 1.42759 1.34515 0.86564 0.78807 0.77728 0.84779 1.20544 1.21158 1.19725 1.22758 0.79920 0.74448 0.89936 1.90728 1.39203 1.45358 1.56604 1.87107 1.34653 1.62293 1.40888 0.90928 0.90977 0.89289 0.90647 0.91628 0.89226 0.86838 0.86214 0.90791 0.88089 0.89779 0.74665 0.84804 0.84945 0.91256 0.91574 0.96070 0.96084 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.91 37.16 0.33 -0.55 16 2 C 0.11 0.86 1.24 -89.79 -0.11 0.75 16 3 C -0.17 -1.22 8.79 37.16 0.33 -0.89 16 4 C -0.19 -1.55 4.61 -25.13 -0.12 -1.66 16 5 C 0.12 1.27 1.09 -131.88 -0.14 1.12 16 6 C -0.17 -1.75 7.25 37.16 0.27 -1.48 16 7 N -1.10 -11.94 5.49 0.49 0.00 -11.94 16 8 S 2.60 35.11 5.34 -107.50 -0.57 34.53 16 9 O -0.95 -16.01 18.08 -57.54 -1.04 -17.05 16 10 O -0.95 -14.87 14.63 -57.54 -0.84 -15.71 16 11 C -0.62 -8.09 4.16 37.15 0.15 -7.94 16 12 C -0.11 -1.92 5.16 -26.74 -0.14 -2.06 16 13 C 0.03 0.74 4.97 -27.88 -0.14 0.60 16 14 C -0.53 -14.12 9.11 -34.44 -0.31 -14.44 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -25.35 13.29 55.43 0.74 -24.62 16 18 Si 0.89 20.84 29.54 -169.99 -5.02 15.81 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 C 0.49 5.83 7.17 36.32 0.26 6.09 16 23 O -0.44 -6.49 18.00 -18.42 -0.33 -6.82 16 24 O -0.33 -3.53 10.48 -38.47 -0.40 -3.93 16 25 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 26 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.48 8.06 -51.93 -0.42 0.07 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.11 0.71 7.59 -51.93 -0.39 0.32 16 32 H 0.12 0.91 3.88 -51.93 -0.20 0.71 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.09 6.12 -51.93 -0.32 0.77 16 35 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 36 H 0.42 4.07 8.61 -34.47 -0.30 3.77 16 37 H 0.13 1.47 6.55 -51.92 -0.34 1.13 16 38 H 0.13 1.44 7.54 -51.92 -0.39 1.05 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -34.67 357.98 -8.34 -43.01 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.55 Total: 0.23 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 0.28 Total: -18.93 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.74 Total: -36.55 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -2.62 Total: -43.51 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 35.11 SS G_CDS: -0.57 Total: 34.53 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.67 -8.34 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820734617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.779 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds