Wall clock time and date at job start Tue Mar 31 2020 12:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 110.38645 * 2 1 4 4 C 1.54569 * 110.44103 * 237.44272 * 2 1 3 5 5 C 1.54489 * 102.14601 * 214.40773 * 4 2 1 6 6 C 1.52998 * 110.46030 * 134.22486 * 5 4 2 7 7 N 1.46498 * 110.36984 * 256.50728 * 5 4 2 8 8 S 1.65597 * 120.00002 * 287.66458 * 7 5 4 9 9 O 1.42097 * 104.27787 * 179.03278 * 8 7 5 10 10 O 1.42099 * 104.27460 * 306.88887 * 8 7 5 11 11 C 1.81395 * 104.45181 * 62.96192 * 8 7 5 12 12 C 1.52994 * 109.47512 * 172.13528 * 11 8 7 13 13 C 1.52997 * 109.47534 * 180.02562 * 12 11 8 14 14 C 1.50703 * 109.47134 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00301 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00099 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99645 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00373 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47294 * 89.99755 * 18 16 14 20 20 H 1.48499 * 109.47415 * 209.99909 * 18 16 14 21 21 H 1.48504 * 109.47138 * 329.99804 * 18 16 14 22 22 C 1.51332 * 104.82185 * 15.34578 * 5 4 2 23 23 O 1.20836 * 125.09009 * 182.27920 * 22 5 4 24 24 O 1.34061 * 109.81535 * 2.31235 * 22 5 4 25 25 H 1.09008 * 109.47139 * 299.03134 * 1 2 3 26 26 H 1.09004 * 109.47088 * 179.03690 * 1 2 3 27 27 H 1.08994 * 109.47229 * 59.03552 * 1 2 3 28 28 H 1.08993 * 109.47868 * 59.30329 * 3 2 1 29 29 H 1.09004 * 109.46596 * 179.30133 * 3 2 1 30 30 H 1.08998 * 109.46959 * 299.29450 * 3 2 1 31 31 H 1.09002 * 110.86246 * 332.57251 * 4 2 1 32 32 H 1.08998 * 110.86600 * 96.24320 * 4 2 1 33 33 H 1.08995 * 109.47517 * 296.99800 * 6 5 4 34 34 H 1.09004 * 109.46851 * 56.99558 * 6 5 4 35 35 H 1.08997 * 109.46916 * 176.99192 * 6 5 4 36 36 H 0.96996 * 119.99648 * 107.65960 * 7 5 4 37 37 H 1.09000 * 109.47110 * 292.13810 * 11 8 7 38 38 H 1.09004 * 109.47210 * 52.13466 * 11 8 7 39 39 H 1.09000 * 109.47163 * 300.00249 * 12 11 8 40 40 H 1.09004 * 109.46934 * 59.99769 * 12 11 8 41 41 H 1.09001 * 109.46780 * 299.99510 * 13 12 11 42 42 H 1.08990 * 109.47281 * 60.00131 * 13 12 11 43 43 H 0.96996 * 119.99873 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 6 2.0698 -0.7794 -1.2208 5 6 3.3510 -1.4285 -0.6514 6 6 3.4293 -2.9019 -1.0561 7 7 4.5382 -0.7085 -1.1186 8 16 5.0240 -0.8480 -2.6955 9 8 6.1688 -0.0110 -2.7849 10 8 5.1225 -2.2494 -2.9092 11 6 3.6508 -0.1528 -3.6554 12 6 4.0597 -0.0441 -5.1257 13 6 2.9017 0.5429 -5.9352 14 6 3.3043 0.6493 -7.3835 15 1 4.2879 0.3305 -7.6954 16 6 2.4173 1.1545 -8.3103 17 7 1.2197 1.5431 -7.9305 18 14 2.9166 1.2871 -10.1054 19 1 2.5568 0.0322 -10.8133 20 1 2.2072 2.4306 -10.7334 21 1 4.3829 1.5039 -10.1967 22 6 3.2148 -1.3013 0.8504 23 8 4.0415 -1.6595 1.6556 24 8 2.0393 -0.7325 1.1536 25 1 -0.3634 0.4987 0.8986 26 1 -0.3633 -1.0276 -0.0173 27 1 -0.3633 0.5287 -0.8812 28 1 1.6979 1.9576 0.8836 29 1 3.1528 1.4167 0.0125 30 1 1.7182 1.9499 -0.8962 31 1 1.3583 -1.5405 -1.5410 32 1 2.3092 -0.1010 -2.0396 33 1 2.5885 -3.4431 -0.6223 34 1 3.3918 -2.9827 -2.1425 35 1 4.3634 -3.3295 -0.6920 36 1 5.0397 -0.1501 -0.5042 37 1 2.7803 -0.8028 -3.5675 38 1 3.4047 0.8377 -3.2726 39 1 4.9302 0.6059 -5.2136 40 1 4.3058 -1.0346 -5.5085 41 1 2.0309 -0.1070 -5.8473 42 1 2.6560 1.5333 -5.5523 43 1 0.5955 1.8982 -8.5825 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820734617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:38 Heat of formation + Delta-G solvation = -186.222820 kcal Electronic energy + Delta-G solvation = -26448.409076 eV Core-core repulsion = 22619.880412 eV Total energy + Delta-G solvation = -3828.528664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.67278 -39.06861 -38.41969 -37.34996 -37.00504 -36.45781 -34.46517 -34.11978 -31.63135 -29.76806 -28.44026 -28.02531 -25.88889 -25.09147 -23.00521 -22.07197 -21.21850 -20.37209 -18.74709 -18.62045 -18.17406 -18.10356 -17.28507 -17.22336 -16.81909 -16.45074 -15.90759 -15.72043 -15.43023 -15.07583 -14.58344 -14.37052 -14.30457 -14.10257 -14.02989 -13.61376 -13.49907 -13.33369 -13.23073 -13.11765 -13.02305 -12.97497 -12.75808 -12.73384 -12.70489 -12.57084 -12.35762 -12.10891 -12.06031 -11.69834 -11.55691 -11.34682 -11.26697 -11.10084 -10.63220 -10.52099 -8.19066 -6.27983 -0.88154 0.66109 1.42581 1.43847 1.53902 1.66271 1.97901 2.42620 2.49584 2.67937 3.02443 3.15546 3.20679 3.35384 3.59155 3.66567 3.79585 3.90157 3.96089 4.07873 4.38180 4.53784 4.63681 4.65652 4.69394 4.72672 4.76935 4.79871 4.88680 4.93377 4.97557 5.11858 5.19577 5.22613 5.30915 5.51894 5.65701 5.71056 5.73536 5.85283 6.17830 6.25634 6.87554 7.40994 8.91818 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.017265 B = 0.003726 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.401507 B = 7513.691409 C = 8522.057557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.105 3.895 3 C -0.177 4.177 4 C -0.193 4.193 5 C 0.124 3.876 6 C -0.172 4.172 7 N -1.096 6.096 8 S 2.620 3.380 9 O -0.988 6.988 10 O -0.973 6.973 11 C -0.611 4.611 12 C -0.105 4.105 13 C 0.033 3.967 14 C -0.551 4.551 15 H 0.056 0.944 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.954 3.046 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.268 1.268 22 C 0.497 3.503 23 O -0.476 6.476 24 O -0.340 6.340 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.425 0.575 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.011 0.989 42 H 0.008 0.992 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 -2.923 16.685 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.069 3.931 3 C -0.234 4.234 4 C -0.232 4.232 5 C 0.033 3.967 6 C -0.230 4.230 7 N -0.857 5.857 8 S 2.717 3.283 9 O -0.978 6.978 10 O -0.963 6.963 11 C -0.743 4.743 12 C -0.144 4.144 13 C -0.005 4.005 14 C -0.589 4.589 15 H 0.075 0.925 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.779 3.221 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.192 1.192 22 C 0.335 3.665 23 O -0.360 6.360 24 O -0.256 6.256 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.121 0.879 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.155 0.845 32 H 0.145 0.855 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.261 0.739 37 H 0.179 0.821 38 H 0.177 0.823 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.029 0.971 42 H 0.027 0.973 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.463 -3.515 16.848 17.386 hybrid contribution 0.002 0.667 -0.648 0.930 sum -2.461 -2.848 16.200 16.631 Atomic orbital electron populations 1.21981 0.88675 1.04669 1.04866 1.23412 0.97460 0.91695 0.80485 1.22426 1.01891 0.93602 1.05504 1.24416 0.96103 1.03002 0.99632 1.21555 0.86792 0.95732 0.92634 1.22530 1.04418 0.90762 1.05274 1.55436 1.39091 1.62004 1.29123 1.04694 0.75921 0.74376 0.73337 1.93553 1.48213 1.70426 1.85638 1.93568 1.86377 1.31370 1.84964 1.30802 1.19290 1.15503 1.08675 1.21322 1.00678 1.01952 0.90484 1.18952 0.93028 0.95478 0.93060 1.21745 1.00310 1.42001 0.94889 0.92543 1.25786 0.94990 0.94985 1.03232 1.70033 1.07060 1.43600 1.35837 0.85616 0.78601 0.77879 0.80005 1.19903 1.20737 1.19247 1.22937 0.79741 0.73568 0.90203 1.90706 1.40644 1.47016 1.57651 1.87109 1.33947 1.62142 1.42424 0.90656 0.90424 0.87872 0.90223 0.92169 0.87746 0.84502 0.85512 0.88601 0.88095 0.91586 0.73928 0.82135 0.82276 0.91731 0.91521 0.97067 0.97314 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.91 71.98 0.64 -0.69 16 2 C 0.11 1.39 1.24 -10.26 -0.01 1.38 16 3 C -0.18 -2.12 8.79 71.98 0.63 -1.49 16 4 C -0.19 -2.53 4.61 31.63 0.15 -2.39 16 5 C 0.12 2.33 1.09 3.56 0.00 2.33 16 6 C -0.17 -3.36 7.25 71.98 0.52 -2.84 16 7 N -1.10 -22.32 5.49 -152.37 -0.84 -23.16 16 8 S 2.62 67.67 5.34 -56.49 -0.30 67.37 16 9 O -0.99 -32.56 18.08 -127.65 -2.31 -34.86 16 10 O -0.97 -29.53 14.63 -127.65 -1.87 -31.39 16 11 C -0.61 -14.68 4.16 71.98 0.30 -14.38 16 12 C -0.11 -3.73 5.16 30.59 0.16 -3.58 16 13 C 0.03 1.53 4.97 29.85 0.15 1.68 16 14 C -0.55 -29.37 9.11 25.60 0.23 -29.13 16 15 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 16 C 0.01 0.47 5.46 84.65 0.46 0.93 16 17 N -0.93 -52.12 13.29 21.45 0.28 -51.83 16 18 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 22 C 0.50 11.30 7.17 71.44 0.51 11.81 16 23 O -0.48 -14.13 18.00 21.61 0.39 -13.74 16 24 O -0.34 -6.68 10.48 -50.13 -0.53 -7.20 16 25 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.08 0.64 8.12 -2.38 -0.02 0.62 16 27 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.78 8.06 -2.38 -0.02 0.76 16 30 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.14 1.19 7.59 -2.39 -0.02 1.17 16 32 H 0.13 1.48 3.88 -2.39 -0.01 1.47 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.10 1.99 6.12 -2.38 -0.01 1.98 16 35 H 0.07 1.54 8.12 -2.39 -0.02 1.52 16 36 H 0.42 7.91 8.61 -96.75 -0.83 7.07 16 37 H 0.16 3.01 6.55 -2.39 -0.02 2.99 16 38 H 0.16 2.99 7.54 -2.39 -0.02 2.97 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -74.38 357.98 0.79 -73.59 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.19 Total: 13.31 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 3.75 Total: -36.36 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -0.55 Total: -74.99 kcal Atomic # 8 Polarization: -82.89 SS G_CDS: -4.31 Total: -87.20 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 67.67 SS G_CDS: -0.30 Total: 67.37 kcal Total: -74.38 0.79 -73.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820734617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.635 kcal (2) G-P(sol) polarization free energy of solvation -74.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds