Wall clock time and date at job start Tue Mar 31 2020 12:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47559 * 2 1 4 4 N 1.30830 * 125.89301 * 270.21682 * 3 2 1 5 5 N 1.40082 * 108.23790 * 180.25197 * 4 3 2 6 6 C 1.46494 * 126.03560 * 179.75015 * 5 4 3 7 7 C 1.34976 * 107.92568 * 359.71823 * 5 4 3 8 8 Cl 1.73605 * 126.14310 * 179.97438 * 7 5 4 9 9 C 1.35460 * 107.71932 * 0.02562 * 7 5 4 10 10 C 1.50699 * 126.05250 * 180.02562 * 9 7 5 11 11 N 1.46499 * 109.47496 * 90.02195 * 10 9 7 12 12 C 1.39687 * 120.00291 * 180.02562 * 11 10 9 13 13 C 1.39332 * 119.95301 * 359.72883 * 12 11 10 14 14 C 1.38471 * 120.42417 * 179.72425 * 13 12 11 15 15 C 1.37684 * 120.32736 * 0.54657 * 14 13 12 16 16 C 1.40751 * 119.89275 * 359.72985 * 15 14 13 17 17 C 1.41406 * 120.21226 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00519 * 204.45100 * 17 16 15 19 19 C 1.39929 * 119.99761 * 24.44881 * 17 16 15 20 20 N 1.30828 * 120.00284 * 17.89458 * 19 17 16 21 21 Si 1.86803 * 119.99910 * 197.89498 * 19 17 16 22 22 H 1.48497 * 109.47292 * 90.00071 * 21 19 17 23 23 H 1.48503 * 109.47099 * 210.00080 * 21 19 17 24 24 H 1.48502 * 109.47064 * 329.99932 * 21 19 17 25 25 C 1.38274 * 119.94747 * 180.02562 * 12 11 10 26 26 H 1.08999 * 109.46986 * 300.00108 * 1 2 3 27 27 H 1.09000 * 109.46536 * 59.99862 * 1 2 3 28 28 H 1.09002 * 109.47117 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47402 * 239.99972 * 2 1 3 30 30 H 1.09000 * 109.47052 * 120.00240 * 2 1 3 31 31 H 1.08995 * 109.47382 * 269.96306 * 6 5 4 32 32 H 1.09001 * 109.47324 * 29.96143 * 6 5 4 33 33 H 1.09004 * 109.47220 * 149.95882 * 6 5 4 34 34 H 1.08998 * 109.47272 * 330.02392 * 10 9 7 35 35 H 1.09001 * 109.47093 * 210.02244 * 10 9 7 36 36 H 0.97001 * 119.99605 * 359.97438 * 11 10 9 37 37 H 1.08004 * 119.78417 * 359.97438 * 13 12 11 38 38 H 1.08001 * 119.83538 * 180.27677 * 14 13 12 39 39 H 1.07999 * 120.05635 * 179.74490 * 15 14 13 40 40 H 0.97001 * 120.00295 * 179.97438 * 20 19 17 41 41 H 1.07997 * 120.16779 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2844 2.1453 -1.0599 5 7 2.7364 3.4012 -0.6350 6 6 3.1337 4.5129 -1.5025 7 6 2.7407 3.4065 0.7147 8 17 3.2187 4.7296 1.7320 9 6 2.3063 2.1936 1.1331 10 6 2.1502 1.7532 2.5658 11 7 0.7994 2.0763 3.0317 12 6 0.4171 1.7615 4.3379 13 6 1.3194 1.1351 5.1950 14 6 0.9526 0.8238 6.4935 15 6 -0.3126 1.1201 6.9485 16 6 -1.2369 1.7476 6.0924 17 6 -2.5380 2.0554 6.5528 18 1 -3.3501 2.1578 5.8483 19 6 -2.7733 2.2273 7.9214 20 7 -1.7731 2.4529 8.7340 21 14 -4.5158 2.1347 8.5884 22 1 -4.8282 0.7324 8.9639 23 1 -4.6346 3.0058 9.7852 24 1 -5.4696 2.5924 7.5463 25 6 -0.8584 2.0665 4.7763 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.1994 4.4416 -1.7194 32 1 2.5695 4.4664 -2.4340 33 1 2.9275 5.4578 -0.9997 34 1 2.8819 2.2702 3.1866 35 1 2.3107 0.6773 2.6347 36 1 0.1707 2.5095 2.4334 37 1 2.3127 0.8945 4.8457 38 1 1.6612 0.3423 7.1512 39 1 -0.5954 0.8716 7.9608 40 1 -1.9362 2.5724 9.6826 41 1 -1.5601 2.5481 4.1115 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825147860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:00 Heat of formation + Delta-G solvation = 83.748053 kcal Electronic energy + Delta-G solvation = -23625.607396 eV Core-core repulsion = 20146.343512 eV Total energy + Delta-G solvation = -3479.263884 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58790 -37.74152 -37.04002 -35.51867 -34.48503 -33.08853 -31.95312 -30.59812 -29.66737 -28.11287 -26.69217 -25.15706 -24.45689 -23.39556 -21.14295 -20.58720 -20.13873 -19.52843 -17.34200 -17.07286 -16.02634 -15.41552 -15.30600 -15.25088 -14.56637 -14.40977 -14.08567 -13.70806 -13.57187 -13.20960 -13.06312 -12.91914 -12.60909 -12.52802 -12.33612 -12.01738 -11.81516 -11.64515 -11.50414 -11.36885 -11.24027 -11.05964 -10.97184 -10.58942 -10.47366 -10.34695 -9.75082 -9.32946 -9.24510 -9.14028 -8.64494 -8.62922 -7.31021 -6.64980 -6.10959 -4.24450 1.29591 1.41569 2.37721 2.40294 2.91090 3.13512 3.17115 3.29725 3.45027 4.01777 4.10986 4.54875 4.65828 4.78420 4.80835 4.91078 5.04154 5.07209 5.22328 5.32275 5.43476 5.58043 5.86930 5.89537 5.99479 6.00764 6.16845 6.25669 6.39050 6.41918 6.48316 6.63270 7.11644 7.13580 7.18402 7.37834 7.42082 7.48942 7.86662 7.99647 8.21809 8.33111 8.59180 8.72884 8.87000 9.07189 9.20024 10.31074 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.003028 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.025869 B = 9244.915174 C = 9705.175357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C 0.103 3.897 4 N -0.277 5.277 5 N -0.370 5.370 6 C 0.098 3.902 7 C 0.136 3.864 8 Cl 0.004 6.996 9 C -0.219 4.219 10 C 0.214 3.786 11 N -0.755 5.755 12 C 0.229 3.771 13 C -0.301 4.301 14 C -0.075 4.075 15 C -0.200 4.200 16 C 0.142 3.858 17 C -0.466 4.466 18 H 0.075 0.925 19 C 0.078 3.922 20 N -0.793 5.793 21 Si 0.905 3.095 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.263 1.263 25 C -0.289 4.289 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.386 0.614 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.278 0.722 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.036 1.439 -16.318 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C -0.063 4.063 4 N -0.100 5.100 5 N -0.154 5.154 6 C -0.043 4.043 7 C -0.018 4.018 8 Cl 0.032 6.968 9 C -0.232 4.232 10 C 0.088 3.912 11 N -0.388 5.388 12 C 0.130 3.870 13 C -0.324 4.324 14 C -0.094 4.094 15 C -0.221 4.221 16 C 0.139 3.861 17 C -0.496 4.496 18 H 0.093 0.907 19 C -0.139 4.139 20 N -0.418 5.418 21 Si 0.729 3.271 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.187 1.187 25 C -0.313 4.313 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.219 0.781 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.396 1.743 -17.341 19.799 hybrid contribution -0.773 0.638 1.031 1.438 sum 8.623 2.381 -16.310 18.602 Atomic orbital electron populations 1.21715 0.93625 1.02374 1.02692 1.20021 0.96729 0.87907 1.03572 1.22211 0.97416 0.97251 0.89426 1.77480 1.21261 0.89567 1.21668 1.48499 1.51862 1.12300 1.02755 1.21932 1.01580 0.85860 0.94949 1.21568 1.04132 0.92267 0.83811 1.98431 1.90006 1.44469 1.63925 1.19807 1.13176 0.92613 0.97565 1.19213 0.86418 0.99080 0.86449 1.44449 1.12537 1.70012 1.11825 1.17435 0.93158 0.93546 0.82850 1.19844 0.98791 1.17943 0.95779 1.20427 0.96027 0.98765 0.94180 1.21159 0.93897 1.06134 1.00885 1.17322 0.92470 0.86412 0.89889 1.19548 0.95165 1.42951 0.91892 0.90726 1.25872 0.98669 0.92271 0.97125 1.69866 1.32869 1.33914 1.05179 0.86383 0.82946 0.79005 0.78736 1.19357 1.20479 1.18748 1.20378 0.94954 1.16909 0.99017 0.91428 0.92837 0.91766 0.90394 0.89304 0.90343 0.88714 0.89323 0.92473 0.92093 0.78067 0.89700 0.89772 0.86894 0.91132 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.89 37.16 0.37 -1.26 16 2 C -0.04 -0.47 6.31 -27.88 -0.18 -0.65 16 3 C 0.10 1.36 6.47 -82.41 -0.53 0.82 16 4 N -0.28 -3.70 12.57 33.67 0.42 -3.27 16 5 N -0.37 -4.40 4.01 -64.91 -0.26 -4.66 16 6 C 0.10 0.73 11.31 59.84 0.68 1.40 16 7 C 0.14 1.77 7.45 -17.16 -0.13 1.64 16 8 Cl 0.00 0.04 28.34 -51.86 -1.47 -1.43 16 9 C -0.22 -3.04 5.47 -105.01 -0.57 -3.61 16 10 C 0.21 3.29 5.03 -5.19 -0.03 3.26 16 11 N -0.75 -13.54 5.72 -59.86 -0.34 -13.89 16 12 C 0.23 5.10 6.64 -83.86 -0.56 4.54 16 13 C -0.30 -6.79 9.32 -39.09 -0.36 -7.15 16 14 C -0.07 -1.80 10.01 -39.70 -0.40 -2.20 16 15 C -0.20 -5.35 8.70 -38.83 -0.34 -5.69 16 16 C 0.14 3.88 5.57 -106.85 -0.60 3.28 16 17 C -0.47 -12.67 9.05 -37.74 -0.34 -13.01 16 18 H 0.07 1.96 7.91 -52.49 -0.41 1.55 16 19 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 20 N -0.79 -21.02 10.96 55.55 0.61 -20.41 16 21 Si 0.90 19.09 29.60 -169.99 -5.03 14.06 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 25 C -0.29 -7.20 9.63 -38.67 -0.37 -7.57 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.95 7.25 -51.93 -0.38 0.57 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.55 7.81 -51.93 -0.41 0.14 16 34 H 0.06 0.92 7.72 -51.93 -0.40 0.52 16 35 H 0.06 0.92 7.04 -51.93 -0.37 0.55 16 36 H 0.39 6.72 8.47 -40.82 -0.35 6.38 16 37 H 0.08 1.72 6.70 -52.48 -0.35 1.37 16 38 H 0.08 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.11 3.12 6.15 -52.49 -0.32 2.80 16 40 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 41 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -29.82 360.83 -9.58 -39.40 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.50 Total: 9.03 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -3.45 Total: -24.27 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.43 Total: -42.24 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.47 Total: -1.43 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.82 -9.58 -39.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825147860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.153 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds