Wall clock time and date at job start Tue Mar 31 2020 14:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46779 * 2 1 4 4 C 1.53001 * 109.47523 * 240.00179 * 2 1 3 5 5 C 1.53000 * 109.47351 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.47114 * 59.99840 * 5 4 2 7 7 C 1.53004 * 109.46965 * 299.99962 * 6 5 4 8 8 C 1.53000 * 109.47174 * 60.00075 * 7 6 5 9 9 H 1.09000 * 109.46955 * 179.97438 * 8 7 6 10 10 O 1.42905 * 109.46996 * 59.99755 * 8 7 6 11 11 C 1.42899 * 113.99778 * 90.00183 * 10 8 7 12 12 C 1.50699 * 109.46785 * 179.97438 * 11 10 8 13 13 O 1.21276 * 120.00221 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99728 * 179.97438 * 12 11 10 15 15 S 1.65603 * 119.99683 * 179.97438 * 14 12 11 16 16 O 1.42102 * 104.27199 * 181.07367 * 15 14 12 17 17 O 1.42097 * 104.27820 * 308.92522 * 15 14 12 18 18 C 1.81394 * 104.44856 * 65.00163 * 15 14 12 19 19 C 1.50705 * 109.46984 * 179.97438 * 18 15 14 20 20 H 1.07996 * 120.00040 * 359.97438 * 19 18 15 21 21 C 1.37879 * 119.99669 * 180.02562 * 19 18 15 22 22 N 1.31515 * 119.99579 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00448 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47539 * 90.00083 * 23 21 19 25 25 H 1.48500 * 109.47227 * 210.00088 * 23 21 19 26 26 H 1.48504 * 109.47078 * 329.99904 * 23 21 19 27 27 H 1.09000 * 109.47127 * 299.99787 * 1 2 3 28 28 H 1.08992 * 109.47209 * 60.00403 * 1 2 3 29 29 H 1.09002 * 109.46774 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46495 * 299.99435 * 4 2 1 31 31 H 1.08997 * 109.46999 * 59.99187 * 4 2 1 32 32 H 1.09000 * 109.46955 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47131 * 299.99932 * 5 4 2 34 34 H 1.09002 * 109.47046 * 60.00040 * 6 5 4 35 35 H 1.08999 * 109.46951 * 179.97438 * 6 5 4 36 36 H 1.08992 * 109.46857 * 300.00203 * 7 6 5 37 37 H 1.09000 * 109.46579 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47171 * 299.99768 * 11 10 8 39 39 H 1.08997 * 109.47442 * 59.99964 * 11 10 8 40 40 H 0.96996 * 119.99888 * 0.02562 * 14 12 11 41 41 H 1.08995 * 109.47788 * 299.99591 * 18 15 14 42 42 H 1.09001 * 109.47277 * 60.00184 * 18 15 14 43 43 H 0.97003 * 119.99910 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7206 -1.2495 6 6 4.0806 -1.4415 -0.0002 7 6 3.5705 -0.7202 1.2490 8 6 2.0405 -0.7208 1.2493 9 1 1.6772 -0.2074 2.1395 10 8 1.5647 -2.0683 1.2496 11 6 1.3714 -2.6162 2.5552 12 6 0.8706 -4.0325 2.4364 13 8 0.6959 -4.5242 1.3416 14 7 0.6168 -4.7529 3.5470 15 16 0.0659 -6.3091 3.4165 16 8 -0.1099 -6.7324 4.7615 17 8 -1.0387 -6.2164 2.5274 18 6 1.4349 -7.2102 2.6392 19 6 1.0498 -8.6569 2.4658 20 1 0.0788 -8.9999 2.7911 21 6 1.9376 -9.5426 1.8929 22 7 1.6013 -10.8050 1.7411 23 14 3.6174 -8.9495 1.3310 24 1 4.5884 -9.0833 2.4466 25 1 4.0716 -9.7686 0.1786 26 1 3.5277 -7.5250 0.9210 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6768 -1.7489 -1.2491 31 1 1.6766 -0.2074 -2.1392 32 1 3.9334 -1.2340 -2.1397 33 1 3.9330 0.3072 -1.2497 34 1 3.7176 -2.4693 0.0000 35 1 5.1706 -1.4415 -0.0007 36 1 3.9334 0.3075 1.2487 37 1 3.9339 -1.2341 2.1390 38 1 2.3178 -2.6091 3.0959 39 1 0.6394 -2.0165 3.0961 40 1 0.7562 -4.3595 4.4226 41 1 1.6515 -6.7723 1.6649 42 1 2.3197 -7.1436 3.2724 43 1 2.2261 -11.4283 1.3384 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835412971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:49 Heat of formation + Delta-G solvation = -178.384691 kcal Electronic energy + Delta-G solvation = -25923.677799 eV Core-core repulsion = 22095.489022 eV Total energy + Delta-G solvation = -3828.188777 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.25910 -39.35894 -36.43807 -36.15469 -35.31065 -34.27399 -33.25692 -32.80687 -30.48559 -29.82555 -28.27130 -26.28143 -23.11572 -22.77352 -21.88259 -21.41020 -19.88779 -19.30412 -17.93586 -17.49665 -16.82843 -16.48291 -16.23655 -15.67222 -15.62520 -14.93412 -14.79442 -14.61726 -14.24999 -14.14642 -13.87236 -13.37974 -13.25620 -12.78594 -12.72130 -12.53508 -12.37785 -12.12621 -11.87105 -11.76226 -11.71572 -11.67292 -11.42879 -11.33023 -11.05467 -10.86506 -10.72121 -10.69598 -10.63905 -10.33453 -10.18977 -10.00303 -9.85837 -9.68308 -9.42940 -8.83001 -6.31718 -4.41221 0.81454 2.21677 2.78618 3.15459 3.24934 3.27382 3.55429 4.21774 4.23429 4.40381 4.46470 4.49375 4.59537 4.80345 4.83684 4.88043 4.91986 4.95374 5.09191 5.11776 5.12192 5.21538 5.27632 5.28450 5.43824 5.59335 5.62995 5.71947 5.76517 5.95055 6.00614 6.08562 6.12153 6.15649 6.19587 6.30132 6.38121 6.72447 6.94845 7.16580 7.64549 7.99378 8.58356 9.22964 10.79149 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.003982 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.320634 B = 7029.651627 C = 8150.792592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 H 0.078 0.922 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.119 4.119 7 C -0.141 4.141 8 C 0.091 3.909 9 H 0.062 0.938 10 O -0.347 6.347 11 C 0.041 3.959 12 C 0.530 3.470 13 O -0.464 6.464 14 N -1.062 6.062 15 S 2.578 3.422 16 O -0.959 6.959 17 O -0.942 6.942 18 C -0.458 4.458 19 C -0.534 4.534 20 H 0.087 0.913 21 C 0.091 3.909 22 N -0.878 5.878 23 Si 0.881 3.119 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.260 1.260 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.426 0.574 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.522 25.406 0.443 26.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 H 0.096 0.904 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.156 4.156 7 C -0.179 4.179 8 C 0.033 3.967 9 H 0.080 0.920 10 O -0.265 6.265 11 C -0.041 4.041 12 C 0.314 3.686 13 O -0.333 6.333 14 N -0.823 5.823 15 S 2.679 3.321 16 O -0.950 6.950 17 O -0.932 6.932 18 C -0.594 4.594 19 C -0.573 4.573 20 H 0.105 0.895 21 C -0.116 4.116 22 N -0.514 5.514 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.185 1.185 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.260 0.740 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.525 24.518 -0.359 24.935 hybrid contribution 1.661 0.549 0.330 1.781 sum 6.186 25.067 -0.030 25.819 Atomic orbital electron populations 1.21813 0.94599 1.03073 1.01185 1.21210 0.96288 0.98393 0.94319 0.90359 1.21556 0.95198 1.02068 0.96421 1.21511 0.95902 1.00057 0.98004 1.21455 0.99602 1.00719 0.93825 1.22039 0.95617 1.01183 0.99058 1.22230 0.93303 0.82755 0.98368 0.91980 1.88081 1.86464 1.27710 1.24216 1.22356 1.01648 0.92213 0.87855 1.20177 0.76341 0.88316 0.83747 1.90940 1.46033 1.71024 1.25265 1.55547 1.76384 1.35279 1.15135 1.06331 0.78279 0.72444 0.75074 1.93546 1.86238 1.79408 1.35781 1.93556 1.49239 1.83670 1.66756 1.28101 1.12298 1.10009 1.08984 1.20026 1.04649 0.87675 1.44935 0.89481 1.24847 0.98601 0.94377 0.93756 1.69860 1.36547 1.02985 1.41996 0.86743 0.83636 0.79896 0.79098 1.19607 1.20446 1.18475 0.93123 0.92700 0.91285 0.90389 0.92269 0.92026 0.92557 0.90711 0.92372 0.91118 0.91803 0.89570 0.89587 0.73996 0.88408 0.90137 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.05 37.16 0.34 -0.98 16 2 C -0.08 -0.70 2.55 -90.62 -0.23 -0.93 16 3 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.11 -1.10 5.06 -26.73 -0.14 -1.23 16 5 C -0.12 -1.03 5.92 -26.73 -0.16 -1.18 16 6 C -0.12 -1.11 5.78 -26.73 -0.15 -1.27 16 7 C -0.14 -1.11 5.63 -26.73 -0.15 -1.26 16 8 C 0.09 0.79 2.35 -26.73 -0.06 0.72 16 9 H 0.06 0.42 7.78 -51.93 -0.40 0.01 16 10 O -0.35 -4.11 7.50 -55.14 -0.41 -4.53 16 11 C 0.04 0.42 6.23 36.01 0.22 0.64 16 12 C 0.53 8.04 7.64 -10.98 -0.08 7.95 16 13 O -0.46 -9.37 14.60 -22.95 -0.34 -9.70 16 14 N -1.06 -15.26 5.60 31.22 0.17 -15.08 16 15 S 2.58 53.71 5.03 -107.50 -0.54 53.17 16 16 O -0.96 -21.15 18.08 -57.54 -1.04 -22.19 16 17 O -0.94 -23.09 17.04 -64.79 -1.10 -24.19 16 18 C -0.46 -10.67 4.71 36.01 0.17 -10.50 16 19 C -0.53 -15.24 9.68 -34.44 -0.33 -15.57 16 20 H 0.09 2.65 7.96 -52.49 -0.42 2.24 16 21 C 0.09 2.62 5.47 -17.82 -0.10 2.52 16 22 N -0.88 -26.40 13.96 55.43 0.77 -25.63 16 23 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 30 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.89 7.68 -51.93 -0.40 0.49 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 38 H 0.09 0.61 7.87 -51.93 -0.41 0.20 16 39 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 40 H 0.43 3.98 8.79 -34.48 -0.30 3.68 16 41 H 0.10 2.29 6.25 -51.93 -0.32 1.96 16 42 H 0.08 1.65 7.57 -51.92 -0.39 1.25 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 358.76 15.07 5.41 5.41 Total: -1.00 -37.18 358.76 -9.25 -46.43 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.82 Total: 1.13 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -0.68 Total: -21.09 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.95 Total: -40.71 kcal Atomic # 8 Polarization: -57.72 SS G_CDS: -2.89 Total: -60.61 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Atomic # 16 Polarization: 53.71 SS G_CDS: -0.54 Total: 53.17 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.18 -9.25 -46.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835412971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.952 kcal (2) G-P(sol) polarization free energy of solvation -37.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds