Wall clock time and date at job start Tue Mar 31 2020 14:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46779 * 2 1 4 4 C 1.53001 * 109.47523 * 240.00179 * 2 1 3 5 5 C 1.53000 * 109.47351 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.47114 * 59.99840 * 5 4 2 7 7 C 1.53004 * 109.46965 * 299.99962 * 6 5 4 8 8 C 1.53000 * 109.47174 * 60.00075 * 7 6 5 9 9 H 1.09000 * 109.46955 * 179.97438 * 8 7 6 10 10 O 1.42905 * 109.46996 * 59.99755 * 8 7 6 11 11 C 1.42899 * 113.99778 * 90.00183 * 10 8 7 12 12 C 1.50699 * 109.46785 * 179.97438 * 11 10 8 13 13 O 1.21276 * 120.00221 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99728 * 179.97438 * 12 11 10 15 15 S 1.65603 * 119.99683 * 179.97438 * 14 12 11 16 16 O 1.42102 * 104.27199 * 181.07367 * 15 14 12 17 17 O 1.42097 * 104.27820 * 308.92522 * 15 14 12 18 18 C 1.81394 * 104.44856 * 65.00163 * 15 14 12 19 19 C 1.50705 * 109.46984 * 179.97438 * 18 15 14 20 20 H 1.07996 * 120.00040 * 359.97438 * 19 18 15 21 21 C 1.37879 * 119.99669 * 180.02562 * 19 18 15 22 22 N 1.31515 * 119.99579 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00448 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47539 * 90.00083 * 23 21 19 25 25 H 1.48500 * 109.47227 * 210.00088 * 23 21 19 26 26 H 1.48504 * 109.47078 * 329.99904 * 23 21 19 27 27 H 1.09000 * 109.47127 * 299.99787 * 1 2 3 28 28 H 1.08992 * 109.47209 * 60.00403 * 1 2 3 29 29 H 1.09002 * 109.46774 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46495 * 299.99435 * 4 2 1 31 31 H 1.08997 * 109.46999 * 59.99187 * 4 2 1 32 32 H 1.09000 * 109.46955 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47131 * 299.99932 * 5 4 2 34 34 H 1.09002 * 109.47046 * 60.00040 * 6 5 4 35 35 H 1.08999 * 109.46951 * 179.97438 * 6 5 4 36 36 H 1.08992 * 109.46857 * 300.00203 * 7 6 5 37 37 H 1.09000 * 109.46579 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47171 * 299.99768 * 11 10 8 39 39 H 1.08997 * 109.47442 * 59.99964 * 11 10 8 40 40 H 0.96996 * 119.99888 * 0.02562 * 14 12 11 41 41 H 1.08995 * 109.47788 * 299.99591 * 18 15 14 42 42 H 1.09001 * 109.47277 * 60.00184 * 18 15 14 43 43 H 0.97003 * 119.99910 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7206 -1.2495 6 6 4.0806 -1.4415 -0.0002 7 6 3.5705 -0.7202 1.2490 8 6 2.0405 -0.7208 1.2493 9 1 1.6772 -0.2074 2.1395 10 8 1.5647 -2.0683 1.2496 11 6 1.3714 -2.6162 2.5552 12 6 0.8706 -4.0325 2.4364 13 8 0.6959 -4.5242 1.3416 14 7 0.6168 -4.7529 3.5470 15 16 0.0659 -6.3091 3.4165 16 8 -0.1099 -6.7324 4.7615 17 8 -1.0387 -6.2164 2.5274 18 6 1.4349 -7.2102 2.6392 19 6 1.0498 -8.6569 2.4658 20 1 0.0788 -8.9999 2.7911 21 6 1.9376 -9.5426 1.8929 22 7 1.6013 -10.8050 1.7411 23 14 3.6174 -8.9495 1.3310 24 1 4.5884 -9.0833 2.4466 25 1 4.0716 -9.7686 0.1786 26 1 3.5277 -7.5250 0.9210 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6768 -1.7489 -1.2491 31 1 1.6766 -0.2074 -2.1392 32 1 3.9334 -1.2340 -2.1397 33 1 3.9330 0.3072 -1.2497 34 1 3.7176 -2.4693 0.0000 35 1 5.1706 -1.4415 -0.0007 36 1 3.9334 0.3075 1.2487 37 1 3.9339 -1.2341 2.1390 38 1 2.3178 -2.6091 3.0959 39 1 0.6394 -2.0165 3.0961 40 1 0.7562 -4.3595 4.4226 41 1 1.6515 -6.7723 1.6649 42 1 2.3197 -7.1436 3.2724 43 1 2.2261 -11.4283 1.3384 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835412971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:49 Heat of formation + Delta-G solvation = -206.992315 kcal Electronic energy + Delta-G solvation = -25924.918319 eV Core-core repulsion = 22095.489022 eV Total energy + Delta-G solvation = -3829.429297 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.31217 -40.24164 -38.18420 -37.12805 -36.95391 -35.64425 -35.36879 -33.45040 -31.86673 -31.14858 -29.14203 -26.97208 -25.18426 -23.45452 -22.97371 -22.15260 -20.91297 -20.46434 -19.66653 -18.94473 -18.37300 -17.72693 -17.26814 -16.99580 -16.66250 -16.23962 -16.12902 -15.92415 -15.59646 -15.03311 -14.76537 -14.64076 -14.38131 -14.14375 -13.93204 -13.72022 -13.65647 -13.54114 -13.27324 -13.16767 -12.99939 -12.67572 -12.52291 -12.45370 -12.39013 -12.35082 -12.07239 -11.92210 -11.71583 -11.45658 -11.36599 -11.29771 -11.14387 -10.96627 -10.80651 -10.33490 -8.49485 -6.66261 -0.87213 1.02533 1.27675 1.32986 1.43630 1.49175 2.23511 2.57540 2.72823 2.81880 3.24594 3.40573 3.81109 3.84882 3.93422 3.95379 4.22730 4.25368 4.29831 4.31467 4.35313 4.44635 4.46670 4.58838 4.64801 4.67428 4.80968 4.95069 5.00652 5.09901 5.13015 5.13757 5.25883 5.33510 5.39264 5.45104 5.50404 5.63172 5.71615 5.76726 6.25388 6.37109 6.53077 7.02369 8.65683 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.003982 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.320634 B = 7029.651627 C = 8150.792592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.104 0.896 4 C -0.115 4.115 5 C -0.115 4.115 6 C -0.121 4.121 7 C -0.138 4.138 8 C 0.085 3.915 9 H 0.092 0.908 10 O -0.381 6.381 11 C 0.045 3.955 12 C 0.525 3.475 13 O -0.521 6.521 14 N -1.037 6.037 15 S 2.611 3.389 16 O -0.974 6.974 17 O -0.985 6.985 18 C -0.473 4.473 19 C -0.558 4.558 20 H 0.045 0.955 21 C 0.029 3.971 22 N -0.928 5.928 23 Si 0.948 3.052 24 H -0.245 1.245 25 H -0.275 1.275 26 H -0.247 1.247 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.452 0.548 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.991 29.407 1.817 30.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.122 0.878 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.159 4.159 7 C -0.176 4.176 8 C 0.028 3.972 9 H 0.110 0.890 10 O -0.300 6.300 11 C -0.036 4.036 12 C 0.313 3.687 13 O -0.393 6.393 14 N -0.806 5.806 15 S 2.710 3.290 16 O -0.964 6.964 17 O -0.976 6.976 18 C -0.607 4.607 19 C -0.596 4.596 20 H 0.063 0.937 21 C -0.173 4.173 22 N -0.565 5.565 23 Si 0.768 3.232 24 H -0.168 1.168 25 H -0.200 1.200 26 H -0.170 1.170 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.292 0.708 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.995 28.524 1.069 29.389 hybrid contribution 0.806 -0.650 -0.101 1.041 sum 7.802 27.874 0.968 28.962 Atomic orbital electron populations 1.21781 0.95205 1.01231 1.02219 1.21274 0.95768 0.99475 0.93654 0.87763 1.21524 0.95932 1.00071 0.97771 1.21505 0.95147 1.01090 0.97548 1.21451 1.00035 0.99152 0.95226 1.22056 0.94982 1.02296 0.98218 1.22471 0.93822 0.81442 0.99418 0.88988 1.88075 1.87013 1.29588 1.25353 1.22557 1.04440 0.88466 0.88104 1.21329 0.74705 0.90177 0.82507 1.90929 1.48540 1.72386 1.27470 1.54858 1.75814 1.32906 1.16987 1.04980 0.76887 0.73377 0.73782 1.93518 1.86204 1.80780 1.35910 1.93503 1.51042 1.84971 1.68035 1.28153 1.15115 1.07251 1.10212 1.20302 1.03342 0.90867 1.45133 0.93713 1.25947 1.03437 0.94340 0.93573 1.69999 1.38571 1.04593 1.43306 0.85695 0.78103 0.79951 0.79453 1.16837 1.19996 1.17022 0.91452 0.92352 0.94474 0.94232 0.91839 0.93001 0.90407 0.94115 0.91610 0.88838 0.90850 0.85445 0.85613 0.70774 0.88426 0.86677 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.05 71.98 0.65 -1.68 16 2 C -0.08 -1.18 2.55 -10.79 -0.03 -1.21 16 3 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.12 -2.13 5.06 30.59 0.15 -1.98 16 5 C -0.12 -1.85 5.92 30.60 0.18 -1.67 16 6 C -0.12 -2.05 5.78 30.60 0.18 -1.87 16 7 C -0.14 -1.61 5.63 30.60 0.17 -1.44 16 8 C 0.09 1.16 2.35 30.60 0.07 1.23 16 9 H 0.09 0.71 7.78 -2.39 -0.02 0.69 16 10 O -0.38 -8.22 7.50 -129.94 -0.97 -9.19 16 11 C 0.05 0.74 6.23 71.24 0.44 1.18 16 12 C 0.53 14.96 7.64 87.66 0.67 15.63 16 13 O -0.52 -21.21 14.60 24.25 0.35 -20.86 16 14 N -1.04 -27.54 5.60 -173.53 -0.97 -28.51 16 15 S 2.61 108.83 5.03 -56.49 -0.28 108.54 16 16 O -0.97 -42.60 18.08 -127.65 -2.31 -44.91 16 17 O -0.99 -49.76 17.04 -120.72 -2.06 -51.82 16 18 C -0.47 -22.03 4.71 71.24 0.34 -21.69 16 19 C -0.56 -32.97 9.68 25.60 0.25 -32.72 16 20 H 0.04 2.91 7.96 -2.91 -0.02 2.89 16 21 C 0.03 1.71 5.47 84.66 0.46 2.17 16 22 N -0.93 -57.72 13.96 21.45 0.30 -57.42 16 23 Si 0.95 42.83 27.47 68.60 1.88 44.72 16 24 H -0.24 -10.00 7.11 99.48 0.71 -9.30 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 26 H -0.25 -10.51 6.54 99.48 0.65 -9.86 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.04 0.82 7.68 -2.39 -0.02 0.80 16 30 H 0.04 1.02 7.68 -2.39 -0.02 1.01 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.04 0.96 7.68 -2.39 -0.02 0.94 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.07 0.73 7.87 -2.39 -0.02 0.71 16 38 H 0.13 1.08 7.87 -2.39 -0.02 1.06 16 39 H 0.13 1.10 8.08 -2.39 -0.02 1.08 16 40 H 0.45 6.80 8.79 -96.75 -0.85 5.95 16 41 H 0.10 4.58 6.25 -2.39 -0.01 4.56 16 42 H 0.12 4.49 7.57 -2.39 -0.02 4.47 16 43 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -87.42 358.76 -0.42 -87.84 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.10 Total: 15.66 kcal Atomic # 6 Polarization: -47.59 SS G_CDS: 3.54 Total: -44.05 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -0.67 Total: -85.93 kcal Atomic # 8 Polarization: -121.80 SS G_CDS: -4.99 Total: -126.78 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.88 Total: 44.72 kcal Atomic # 16 Polarization: 108.83 SS G_CDS: -0.28 Total: 108.54 kcal Total: -87.42 -0.42 -87.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835412971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.153 kcal (2) G-P(sol) polarization free energy of solvation -87.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds