Wall clock time and date at job start Tue Mar 31 2020 12:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47365 * 2 1 4 4 C 1.50699 * 109.47097 * 239.99749 * 2 1 3 5 5 H 1.08001 * 120.00069 * 240.00197 * 4 2 1 6 6 C 1.37878 * 119.99931 * 59.99951 * 4 2 1 7 7 N 1.31523 * 119.99933 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00131 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47091 * 60.00150 * 8 6 4 10 10 H 1.48506 * 109.47316 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47443 * 299.99868 * 8 6 4 12 12 C 1.52995 * 109.47259 * 119.99896 * 2 1 3 13 13 S 1.81398 * 109.47384 * 299.99933 * 12 2 1 14 14 O 1.42102 * 110.54307 * 68.37028 * 13 12 2 15 15 O 1.42100 * 110.54389 * 291.62408 * 13 12 2 16 16 N 1.65601 * 104.45369 * 179.97438 * 13 12 2 17 17 C 1.46503 * 119.99926 * 64.99780 * 16 13 12 18 18 H 1.09000 * 110.45321 * 334.06209 * 17 16 13 19 19 C 1.51506 * 110.40474 * 96.45533 * 17 16 13 20 20 O 1.20833 * 125.94579 * 278.40869 * 19 17 16 21 21 O 1.34558 * 108.10983 * 98.14138 * 19 17 16 22 22 C 1.45942 * 108.40149 * 33.59957 * 21 19 17 23 23 C 1.54366 * 105.06997 * 327.56055 * 22 21 19 24 24 C 1.52999 * 110.70450 * 136.21001 * 23 22 21 25 25 C 1.53004 * 110.69817 * 259.25350 * 23 22 21 26 26 H 1.09003 * 109.46491 * 300.00008 * 1 2 3 27 27 H 1.09001 * 109.46965 * 59.99912 * 1 2 3 28 28 H 1.08999 * 109.47219 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47470 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47151 * 299.99974 * 3 2 1 31 31 H 1.08995 * 109.47346 * 60.00148 * 3 2 1 32 32 H 0.96997 * 119.99762 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47400 * 179.97438 * 12 2 1 34 34 H 1.08999 * 109.47096 * 59.99813 * 12 2 1 35 35 H 0.97000 * 119.99741 * 245.00280 * 16 13 12 36 36 H 1.09007 * 110.32573 * 86.45702 * 22 21 19 37 37 H 1.09000 * 110.32413 * 208.55379 * 22 21 19 38 38 H 1.08997 * 109.47332 * 61.44952 * 24 23 22 39 39 H 1.08993 * 109.47461 * 181.45313 * 24 23 22 40 40 H 1.09001 * 109.46598 * 301.45579 * 24 23 22 41 41 H 1.09001 * 109.46934 * 58.54551 * 25 23 22 42 42 H 1.09005 * 109.47026 * 178.54491 * 25 23 22 43 43 H 1.08997 * 109.47331 * 298.54769 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.8256 -2.5203 -4.0076 10 1 1.8268 -0.4200 -5.2205 11 1 3.8062 -1.1211 -4.0082 12 6 2.0400 -0.7212 1.2492 13 16 1.4354 0.1339 2.7304 14 8 0.0280 -0.0182 2.8544 15 8 2.0481 1.4100 2.8544 16 7 2.0531 -0.7408 3.9936 17 6 3.5015 -0.7981 4.2059 18 1 4.0308 -0.6349 3.2672 19 6 3.9254 0.2281 5.2367 20 8 4.1167 1.4033 5.0306 21 8 4.0460 -0.3956 6.4229 22 6 4.5173 -1.7557 6.1824 23 6 3.9066 -2.1576 4.8228 24 6 4.9461 -2.8645 3.9507 25 6 2.6775 -3.0464 5.0236 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 0.7088 1.1613 -3.4844 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7488 1.2492 35 1 1.4558 -1.2151 4.5929 36 1 5.6059 -1.7753 6.1290 37 1 4.1656 -2.4230 6.9693 38 1 5.2773 -3.7765 4.4473 39 1 4.5019 -3.1159 2.9877 40 1 5.7997 -2.2046 3.7960 41 1 1.9382 -2.5142 5.6222 42 1 2.2477 -3.2967 4.0536 43 1 2.9709 -3.9614 5.5381 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841534509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:05 Heat of formation + Delta-G solvation = -146.482801 kcal Electronic energy + Delta-G solvation = -27088.338286 eV Core-core repulsion = 23261.532879 eV Total energy + Delta-G solvation = -3826.805407 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48799 -37.84034 -36.63197 -36.31967 -36.29008 -35.34252 -33.37987 -31.70147 -28.26322 -27.18253 -26.93843 -26.65005 -25.73723 -25.25463 -21.54303 -20.30667 -19.73547 -18.87694 -17.81254 -17.34228 -16.94591 -16.63012 -15.98492 -15.38225 -15.31766 -14.85481 -14.73021 -14.58136 -14.08171 -13.97804 -13.39635 -13.13833 -13.01694 -12.63640 -12.53484 -12.46556 -12.13714 -12.05051 -11.67750 -11.58923 -11.46351 -11.39337 -11.16110 -11.08472 -11.04660 -10.93491 -10.77285 -10.73027 -10.41898 -10.29531 -10.12425 -9.68071 -9.63182 -9.29374 -8.72486 -8.42516 -6.05926 -4.18554 0.71004 1.79630 2.94588 3.24077 3.24474 3.30723 3.31317 3.64790 3.78766 4.14226 4.22685 4.27760 4.35446 4.66614 4.72331 4.76846 5.00228 5.01495 5.19229 5.24307 5.29899 5.39757 5.49264 5.52232 5.60506 5.72686 5.78501 5.84468 6.30778 6.44690 6.66289 6.76884 6.81116 6.89265 7.03325 7.29238 7.35905 7.47680 7.64799 7.95903 8.06341 8.29539 8.79440 9.46968 10.95358 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.004413 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.591481 B = 6343.469876 C = 6864.001831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.165 4.165 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.882 5.882 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.579 4.579 13 S 2.579 3.421 14 O -0.958 6.958 15 O -0.944 6.944 16 N -1.108 6.108 17 C 0.104 3.896 18 H 0.126 0.874 19 C 0.466 3.534 20 O -0.409 6.409 21 O -0.351 6.351 22 C 0.061 3.939 23 C -0.106 4.106 24 C -0.144 4.144 25 C -0.141 4.141 26 H 0.027 0.973 27 H 0.096 0.904 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.095 0.905 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.417 0.583 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.898 -10.693 15.018 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.081 3.919 3 C -0.222 4.222 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.712 4.712 13 S 2.677 3.323 14 O -0.948 6.948 15 O -0.934 6.934 16 N -0.867 5.867 17 C -0.007 4.007 18 H 0.144 0.856 19 C 0.300 3.700 20 O -0.286 6.286 21 O -0.269 6.269 22 C -0.014 4.014 23 C -0.108 4.108 24 C -0.201 4.201 25 C -0.198 4.198 26 H 0.046 0.954 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.254 0.746 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.435 -8.988 15.001 18.634 hybrid contribution 0.457 -1.322 -0.927 1.678 sum 6.891 -10.310 14.074 18.758 Atomic orbital electron populations 1.22279 0.96890 1.00620 1.02368 1.17932 0.92849 0.92268 0.88872 1.22283 0.99780 0.97717 1.02453 1.20872 1.31942 1.12128 0.89340 0.92354 1.24939 0.94863 0.94959 0.98927 1.69794 1.36112 1.22470 1.23646 0.86592 0.79126 0.79671 0.82183 1.20290 1.21166 1.20285 1.30520 1.11115 1.12922 1.16685 1.06232 0.74737 0.75568 0.75741 1.93570 1.29041 1.86573 1.85662 1.93636 1.77596 1.37162 1.84966 1.56128 1.11285 1.71188 1.48148 1.22064 0.83694 0.94224 1.00724 0.85604 1.23694 0.74083 0.88891 0.83297 1.90801 1.41938 1.15624 1.80200 1.87303 1.80145 1.27449 1.32030 1.24254 0.99670 0.79955 0.97530 1.22138 0.98355 0.94687 0.95589 1.21906 0.97526 1.00635 1.00056 1.21853 0.95901 0.98666 1.03421 0.95430 0.88583 0.94447 0.94412 0.88624 0.95252 0.92633 0.86523 0.86095 0.74574 0.89357 0.86896 0.91071 0.90633 0.91590 0.91724 0.90619 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 7.78 37.16 0.29 -3.69 16 2 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 3 C -0.16 -4.04 7.77 37.16 0.29 -3.75 16 4 C -0.50 -12.85 8.01 -34.44 -0.28 -13.12 16 5 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -23.83 9.35 55.43 0.52 -23.31 16 8 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 C -0.58 -10.68 4.91 37.16 0.18 -10.50 16 13 S 2.58 47.33 4.44 -107.50 -0.48 46.85 16 14 O -0.96 -19.80 15.70 -57.54 -0.90 -20.71 16 15 O -0.94 -20.60 15.26 -57.58 -0.88 -21.48 16 16 N -1.11 -14.63 4.88 -4.78 -0.02 -14.65 16 17 C 0.10 1.22 3.10 -67.80 -0.21 1.01 16 18 H 0.13 1.39 6.85 -51.93 -0.36 1.04 16 19 C 0.47 6.82 8.13 36.40 0.30 7.12 16 20 O -0.41 -7.82 17.82 -18.36 -0.33 -8.14 16 21 O -0.35 -4.20 11.17 -39.72 -0.44 -4.64 16 22 C 0.06 0.41 7.04 37.87 0.27 0.68 16 23 C -0.11 -0.77 1.09 -152.91 -0.17 -0.94 16 24 C -0.14 -0.82 8.30 37.16 0.31 -0.52 16 25 C -0.14 -0.87 7.28 37.16 0.27 -0.60 16 26 H 0.03 0.64 5.46 -51.93 -0.28 0.35 16 27 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 31 H 0.03 0.69 5.46 -51.93 -0.28 0.41 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 33 H 0.12 1.89 7.47 -51.92 -0.39 1.50 16 34 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 35 H 0.42 4.52 6.26 -34.47 -0.22 4.31 16 36 H 0.09 0.44 7.81 -51.93 -0.41 0.03 16 37 H 0.11 0.48 7.82 -51.93 -0.41 0.08 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.41 6.63 -51.93 -0.34 0.07 16 42 H 0.07 0.50 8.05 -51.93 -0.42 0.08 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -34.69 345.55 -7.50 -42.19 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.23 Total: 4.29 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 1.08 Total: -20.82 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.50 Total: -37.96 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -2.55 Total: -54.97 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 47.33 SS G_CDS: -0.48 Total: 46.85 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.69 -7.50 -42.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841534509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.289 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds