Wall clock time and date at job start Tue Mar 31 2020 12:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47365 * 2 1 4 4 C 1.50699 * 109.47097 * 239.99749 * 2 1 3 5 5 H 1.08001 * 120.00069 * 240.00197 * 4 2 1 6 6 C 1.37878 * 119.99931 * 59.99951 * 4 2 1 7 7 N 1.31523 * 119.99933 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00131 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47091 * 60.00150 * 8 6 4 10 10 H 1.48506 * 109.47316 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47443 * 299.99868 * 8 6 4 12 12 C 1.52995 * 109.47259 * 119.99896 * 2 1 3 13 13 S 1.81398 * 109.47384 * 299.99933 * 12 2 1 14 14 O 1.42102 * 110.54307 * 68.37028 * 13 12 2 15 15 O 1.42100 * 110.54389 * 291.62408 * 13 12 2 16 16 N 1.65601 * 104.45369 * 179.97438 * 13 12 2 17 17 C 1.46503 * 119.99926 * 64.99780 * 16 13 12 18 18 H 1.09000 * 110.45321 * 334.06209 * 17 16 13 19 19 C 1.51506 * 110.40474 * 96.45533 * 17 16 13 20 20 O 1.20833 * 125.94579 * 278.40869 * 19 17 16 21 21 O 1.34558 * 108.10983 * 98.14138 * 19 17 16 22 22 C 1.45942 * 108.40149 * 33.59957 * 21 19 17 23 23 C 1.54366 * 105.06997 * 327.56055 * 22 21 19 24 24 C 1.52999 * 110.70450 * 136.21001 * 23 22 21 25 25 C 1.53004 * 110.69817 * 259.25350 * 23 22 21 26 26 H 1.09003 * 109.46491 * 300.00008 * 1 2 3 27 27 H 1.09001 * 109.46965 * 59.99912 * 1 2 3 28 28 H 1.08999 * 109.47219 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47470 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47151 * 299.99974 * 3 2 1 31 31 H 1.08995 * 109.47346 * 60.00148 * 3 2 1 32 32 H 0.96997 * 119.99762 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47400 * 179.97438 * 12 2 1 34 34 H 1.08999 * 109.47096 * 59.99813 * 12 2 1 35 35 H 0.97000 * 119.99741 * 245.00280 * 16 13 12 36 36 H 1.09007 * 110.32573 * 86.45702 * 22 21 19 37 37 H 1.09000 * 110.32413 * 208.55379 * 22 21 19 38 38 H 1.08997 * 109.47332 * 61.44952 * 24 23 22 39 39 H 1.08993 * 109.47461 * 181.45313 * 24 23 22 40 40 H 1.09001 * 109.46598 * 301.45579 * 24 23 22 41 41 H 1.09001 * 109.46934 * 58.54551 * 25 23 22 42 42 H 1.09005 * 109.47026 * 178.54491 * 25 23 22 43 43 H 1.08997 * 109.47331 * 298.54769 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.8256 -2.5203 -4.0076 10 1 1.8268 -0.4200 -5.2205 11 1 3.8062 -1.1211 -4.0082 12 6 2.0400 -0.7212 1.2492 13 16 1.4354 0.1339 2.7304 14 8 0.0280 -0.0182 2.8544 15 8 2.0481 1.4100 2.8544 16 7 2.0531 -0.7408 3.9936 17 6 3.5015 -0.7981 4.2059 18 1 4.0308 -0.6349 3.2672 19 6 3.9254 0.2281 5.2367 20 8 4.1167 1.4033 5.0306 21 8 4.0460 -0.3956 6.4229 22 6 4.5173 -1.7557 6.1824 23 6 3.9066 -2.1576 4.8228 24 6 4.9461 -2.8645 3.9507 25 6 2.6775 -3.0464 5.0236 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 0.7088 1.1613 -3.4844 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7488 1.2492 35 1 1.4558 -1.2151 4.5929 36 1 5.6059 -1.7753 6.1290 37 1 4.1656 -2.4230 6.9693 38 1 5.2773 -3.7765 4.4473 39 1 4.5019 -3.1159 2.9877 40 1 5.7997 -2.2046 3.7960 41 1 1.9382 -2.5142 5.6222 42 1 2.2477 -3.2967 4.0536 43 1 2.9709 -3.9614 5.5381 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841534509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:04 Heat of formation + Delta-G solvation = -171.493285 kcal Electronic energy + Delta-G solvation = -27089.422822 eV Core-core repulsion = 23261.532879 eV Total energy + Delta-G solvation = -3827.889943 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.37904 -38.94426 -38.17363 -38.13866 -37.23776 -36.92654 -34.26528 -33.61981 -28.95076 -28.44111 -27.75423 -27.69690 -27.49868 -27.22744 -22.55978 -21.47706 -20.98185 -20.32083 -19.02182 -18.53602 -17.95727 -17.80817 -17.65540 -16.88373 -16.63338 -16.58311 -15.84923 -15.50529 -14.94651 -14.85757 -14.69839 -14.53864 -14.42396 -14.20399 -13.86434 -13.40730 -13.22673 -13.08298 -12.99024 -12.94096 -12.84856 -12.78206 -12.53095 -12.34806 -12.27134 -12.20308 -12.15629 -12.14526 -11.96287 -11.76807 -11.56192 -11.45893 -11.34808 -10.65718 -10.39717 -10.35920 -8.01061 -6.20045 -0.74452 0.70563 1.47916 1.48396 1.55418 1.76340 2.26151 2.45991 2.73312 2.89920 3.05053 3.20982 3.26560 3.59859 3.69645 3.81729 4.00306 4.17635 4.21607 4.40362 4.58980 4.60389 4.62527 4.84904 4.86442 4.89669 4.93987 4.98263 5.04312 5.08363 5.10625 5.37834 5.39544 5.42378 5.49916 5.59512 5.66059 5.86546 5.96617 6.11398 6.28086 6.33992 6.85030 7.48574 8.98821 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.004413 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.591481 B = 6343.469876 C = 6864.001831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.070 3.930 3 C -0.161 4.161 4 C -0.514 4.514 5 H 0.070 0.930 6 C 0.016 3.984 7 N -0.910 5.910 8 Si 0.956 3.044 9 H -0.269 1.269 10 H -0.292 1.292 11 H -0.271 1.271 12 C -0.575 4.575 13 S 2.594 3.406 14 O -0.986 6.986 15 O -0.984 6.984 16 N -1.091 6.091 17 C 0.093 3.907 18 H 0.132 0.868 19 C 0.464 3.536 20 O -0.470 6.470 21 O -0.364 6.364 22 C 0.053 3.947 23 C -0.091 4.091 24 C -0.146 4.146 25 C -0.147 4.147 26 H 0.028 0.972 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.260 0.740 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.430 0.570 36 H 0.111 0.889 37 H 0.146 0.854 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.321 -14.149 16.036 22.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.068 3.932 3 C -0.219 4.219 4 C -0.553 4.553 5 H 0.088 0.912 6 C -0.183 4.183 7 N -0.549 5.549 8 Si 0.782 3.218 9 H -0.194 1.194 10 H -0.218 1.218 11 H -0.196 1.196 12 C -0.709 4.709 13 S 2.692 3.308 14 O -0.976 6.976 15 O -0.974 6.974 16 N -0.855 5.855 17 C -0.017 4.017 18 H 0.149 0.851 19 C 0.301 3.699 20 O -0.351 6.351 21 O -0.282 6.282 22 C -0.020 4.020 23 C -0.093 4.093 24 C -0.203 4.203 25 C -0.205 4.205 26 H 0.047 0.953 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.270 0.730 36 H 0.129 0.871 37 H 0.164 0.836 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.849 -12.491 16.044 21.796 hybrid contribution 0.036 -0.301 -1.134 1.174 sum 7.885 -12.792 14.910 21.169 Atomic orbital electron populations 1.22217 0.97808 1.00686 1.01146 1.17919 0.92316 0.91926 0.91012 1.22225 0.99839 0.98711 1.01150 1.21256 1.31686 1.12376 0.90015 0.91199 1.25707 0.95183 0.95616 1.01807 1.69956 1.37257 1.23786 1.23855 0.85650 0.78732 0.78765 0.78679 1.19414 1.21773 1.19641 1.30382 1.12726 1.13650 1.14100 1.05448 0.73870 0.75110 0.76339 1.93523 1.30896 1.86923 1.86267 1.93594 1.78099 1.39950 1.85722 1.55563 1.12515 1.70523 1.46868 1.22408 0.82293 0.96283 1.00719 0.85082 1.24209 0.72624 0.88537 0.84497 1.90762 1.44663 1.18195 1.81450 1.87273 1.79722 1.29943 1.31227 1.24771 1.01184 0.77716 0.98288 1.22190 0.99402 0.92202 0.95548 1.21975 0.96887 1.01565 0.99848 1.21959 0.95216 0.99550 1.03745 0.95312 0.91164 0.93626 0.94100 0.91164 0.95304 0.93035 0.84086 0.83234 0.72967 0.87116 0.83637 0.88364 0.90931 0.91506 0.92121 0.90799 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.86 7.78 71.98 0.56 -7.30 16 2 C 0.07 3.31 0.52 -52.93 -0.03 3.28 16 3 C -0.16 -8.08 7.77 71.98 0.56 -7.52 16 4 C -0.51 -25.67 8.01 25.60 0.21 -25.47 16 5 H 0.07 3.25 7.74 -2.91 -0.02 3.23 16 6 C 0.02 0.84 5.15 84.65 0.44 1.28 16 7 N -0.91 -50.06 9.35 21.45 0.20 -49.86 16 8 Si 0.96 40.99 29.54 68.60 2.03 43.02 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 12 C -0.57 -20.20 4.91 71.98 0.35 -19.84 16 13 S 2.59 93.89 4.44 -56.49 -0.25 93.64 16 14 O -0.99 -40.51 15.70 -127.65 -2.00 -42.52 16 15 O -0.98 -43.76 15.26 -127.61 -1.95 -45.71 16 16 N -1.09 -27.14 4.88 -169.03 -0.83 -27.97 16 17 C 0.09 2.02 3.10 45.08 0.14 2.16 16 18 H 0.13 2.69 6.85 -2.39 -0.02 2.67 16 19 C 0.46 13.39 8.13 71.49 0.58 13.97 16 20 O -0.47 -18.54 17.82 21.57 0.38 -18.16 16 21 O -0.36 -8.11 11.17 -55.03 -0.61 -8.72 16 22 C 0.05 0.53 7.04 72.45 0.51 1.04 16 23 C -0.09 -1.01 1.09 -51.14 -0.06 -1.06 16 24 C -0.15 -1.05 8.30 71.98 0.60 -0.45 16 25 C -0.15 -1.22 7.28 71.98 0.52 -0.69 16 26 H 0.03 1.36 5.46 -2.39 -0.01 1.34 16 27 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 28 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 31 H 0.03 1.40 5.46 -2.39 -0.01 1.39 16 32 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 33 H 0.14 4.23 7.47 -2.39 -0.02 4.21 16 34 H 0.15 4.36 8.14 -2.39 -0.02 4.34 16 35 H 0.43 8.50 6.26 -96.75 -0.61 7.89 16 36 H 0.11 0.64 7.81 -2.38 -0.02 0.62 16 37 H 0.15 0.52 7.82 -2.39 -0.02 0.50 16 38 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.06 0.56 6.63 -2.39 -0.02 0.55 16 42 H 0.07 0.68 8.05 -2.38 -0.02 0.66 16 43 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -78.01 345.55 1.78 -76.23 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.42 Total: 20.66 kcal Atomic # 6 Polarization: -45.01 SS G_CDS: 4.38 Total: -40.62 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -0.63 Total: -77.82 kcal Atomic # 8 Polarization: -110.92 SS G_CDS: -4.18 Total: -115.10 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 16 Polarization: 93.89 SS G_CDS: -0.25 Total: 93.64 kcal Total: -78.01 1.78 -76.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841534509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.261 kcal (2) G-P(sol) polarization free energy of solvation -78.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds