Wall clock time and date at job start Tue Mar 31 2020 14:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.65749 * 2 1 4 4 C 1.54707 * 110.73836 * 236.80654 * 2 1 3 5 5 C 1.51682 * 101.87814 * 216.23955 * 4 2 1 6 6 C 1.37280 * 132.06574 * 195.74766 * 5 4 2 7 7 C 1.39872 * 119.85042 * 179.57805 * 6 5 4 8 8 C 1.47469 * 120.27192 * 179.97438 * 7 6 5 9 9 O 1.21506 * 119.99820 * 0.02562 * 8 7 6 10 10 O 1.34748 * 120.00185 * 180.02562 * 8 7 6 11 11 C 1.45202 * 117.00040 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.46836 * 179.97438 * 11 10 8 13 13 O 1.21279 * 120.00340 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99644 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99947 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.46829 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00767 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99714 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00148 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00049 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47086 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47432 * 120.00199 * 20 18 16 23 23 H 1.48507 * 109.46828 * 240.00052 * 20 18 16 24 24 C 1.39810 * 119.45796 * 0.02562 * 7 6 5 25 25 C 1.37452 * 120.19852 * 0.17542 * 24 7 6 26 26 C 1.39201 * 106.98223 * 15.72197 * 5 4 2 27 27 O 1.35973 * 111.19344 * 0.61814 * 26 5 4 28 28 H 1.08993 * 109.47090 * 183.19797 * 1 2 3 29 29 H 1.08997 * 109.46906 * 303.19336 * 1 2 3 30 30 H 1.08999 * 109.47403 * 63.19248 * 1 2 3 31 31 H 1.08997 * 110.94712 * 334.38920 * 4 2 1 32 32 H 1.08997 * 110.94879 * 98.09710 * 4 2 1 33 33 H 1.07990 * 120.07565 * 359.62513 * 6 5 4 34 34 H 1.09003 * 109.47033 * 299.99417 * 11 10 8 35 35 H 1.09005 * 109.47106 * 59.99665 * 11 10 8 36 36 H 0.96999 * 120.00233 * 359.97438 * 14 12 11 37 37 H 1.09003 * 109.46836 * 299.99866 * 15 14 12 38 38 H 1.08993 * 109.46851 * 59.99883 * 15 14 12 39 39 H 0.96998 * 120.00458 * 179.97438 * 19 18 16 40 40 H 1.07996 * 119.90639 * 180.19782 * 24 7 6 41 41 H 1.07990 * 119.78193 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0778 -0.7921 -1.2107 5 6 3.3080 -1.4542 -0.6199 6 6 4.3945 -2.0604 -1.2002 7 6 5.4086 -2.5898 -0.3953 8 6 6.5795 -3.2434 -1.0088 9 8 6.6664 -3.3234 -2.2181 10 8 7.5531 -3.7520 -0.2282 11 6 8.6756 -4.3816 -0.9005 12 6 9.6566 -4.8868 0.1258 13 8 9.4317 -4.7320 1.3075 14 7 10.7835 -5.5116 -0.2695 15 6 11.7370 -6.0033 0.7283 16 6 12.9020 -6.6566 0.0305 17 1 12.9294 -6.7015 -1.0482 18 6 13.9331 -7.1970 0.7692 19 7 13.8997 -7.1428 2.0829 20 14 15.3776 -8.0061 -0.0956 21 1 15.1762 -7.9376 -1.5653 22 1 16.6314 -7.2975 0.2662 23 1 15.4733 -9.4273 0.3247 24 6 5.3025 -2.4951 0.9955 25 6 4.2082 -1.8896 1.5658 26 6 3.1932 -1.3636 0.7644 27 8 2.0391 -0.7399 1.1222 28 1 -0.3633 -1.0260 0.0573 29 1 -0.3633 0.5626 0.8600 30 1 -0.3634 0.4635 -0.9172 31 1 1.3573 -1.5378 -1.5468 32 1 2.3499 -0.1205 -2.0250 33 1 4.4664 -2.1277 -2.2756 34 1 8.3168 -5.2165 -1.5025 35 1 9.1676 -3.6536 -1.5455 36 1 10.9628 -5.6365 -1.2145 37 1 12.0960 -5.1683 1.3300 38 1 11.2448 -6.7310 1.3734 39 1 14.6249 -7.5233 2.6027 40 1 6.0828 -2.8985 1.6237 41 1 4.1334 -1.8198 2.6409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850061543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:41 Heat of formation + Delta-G solvation = -132.004454 kcal Electronic energy + Delta-G solvation = -24899.542997 eV Core-core repulsion = 20937.921467 eV Total energy + Delta-G solvation = -3961.621530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.67156 -40.47949 -38.77664 -37.68269 -36.27832 -34.25248 -33.69585 -32.41843 -31.75409 -30.82292 -29.17664 -27.26695 -26.57174 -24.30204 -22.56684 -22.30494 -22.21220 -20.93726 -19.94255 -18.23184 -17.92069 -17.54998 -16.91904 -16.61884 -16.59000 -15.82408 -15.45362 -15.16866 -14.65901 -14.59900 -14.54655 -14.12638 -13.91631 -13.62212 -13.37194 -13.15955 -13.11300 -12.85238 -12.74027 -12.49559 -12.43961 -12.00767 -11.79233 -11.76200 -11.28257 -11.11374 -10.99410 -10.94720 -10.69964 -10.69837 -10.35075 -9.42794 -9.34740 -9.18669 -8.79186 -8.62090 -7.99384 -6.20192 -4.27525 0.40939 0.94046 2.29869 2.37115 2.71844 3.17233 3.22250 3.29514 3.32540 3.40405 3.87835 3.94357 4.04631 4.32518 4.34884 4.44382 4.60640 4.63584 4.74883 4.91999 5.00454 5.08935 5.10192 5.16099 5.16799 5.24374 5.30111 5.33981 5.38065 5.53074 5.60981 5.76753 5.89862 5.98823 6.14006 6.30436 6.69628 7.22156 7.30250 7.45352 7.58661 7.67424 7.91384 8.49458 8.70711 8.95832 9.38977 10.89973 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.046730 B = 0.001847 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.045393 B =15156.738921 C =15705.418676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.075 3.925 3 H 0.091 0.909 4 C -0.103 4.103 5 C -0.195 4.195 6 C -0.002 4.002 7 C -0.155 4.155 8 C 0.514 3.486 9 O -0.512 6.512 10 O -0.325 6.325 11 C 0.050 3.950 12 C 0.500 3.500 13 O -0.534 6.534 14 N -0.706 5.706 15 C 0.251 3.749 16 C -0.545 4.545 17 H 0.065 0.935 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.018 4.018 25 C -0.152 4.152 26 C 0.144 3.856 27 O -0.297 6.297 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.140 0.860 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.393 0.607 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.266 0.734 40 H 0.155 0.845 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.846 14.395 -7.166 30.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.019 3.981 3 H 0.109 0.891 4 C -0.140 4.140 5 C -0.195 4.195 6 C -0.021 4.021 7 C -0.156 4.156 8 C 0.359 3.641 9 O -0.402 6.402 10 O -0.239 6.239 11 C -0.027 4.027 12 C 0.283 3.717 13 O -0.412 6.412 14 N -0.356 5.356 15 C 0.130 3.870 16 C -0.583 4.583 17 H 0.083 0.917 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.733 3.267 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.036 4.036 25 C -0.170 4.170 26 C 0.098 3.902 27 O -0.211 6.211 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.158 0.842 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.226 0.774 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.173 0.827 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -25.955 14.414 -6.261 30.341 hybrid contribution 1.043 -0.562 -1.139 1.644 sum -24.911 13.852 -7.400 29.448 Atomic orbital electron populations 1.21898 0.91788 1.03723 1.03350 1.23470 0.96020 0.95524 0.83068 0.89132 1.21874 0.94304 0.99399 0.98444 1.20604 0.98192 1.06887 0.93864 1.20278 0.89649 0.91645 1.00486 1.18853 0.95189 1.07649 0.93957 1.20973 0.82296 0.75705 0.85114 1.90832 1.78355 1.55858 1.15204 1.86593 1.29887 1.67749 1.39706 1.22886 0.85883 0.98940 0.95040 1.19874 0.82713 0.79900 0.89218 1.90703 1.75893 1.56950 1.17636 1.46362 1.20579 1.56932 1.11775 1.19186 0.85871 0.94776 0.87120 1.21252 1.04668 1.38944 0.93473 0.91694 1.24955 0.98430 0.95760 0.94852 1.69981 1.32916 1.44448 1.04834 0.86334 0.81791 0.79029 0.79596 1.19606 1.20770 1.20774 1.21381 0.96291 0.92227 0.93741 1.20289 0.92195 1.04075 1.00487 1.19939 0.86050 0.91432 0.92799 1.86827 1.34349 1.61713 1.38179 0.91243 0.91148 0.90071 0.88775 0.88698 0.84180 0.88390 0.88398 0.77406 0.95225 0.95224 0.92424 0.82726 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.58 37.16 0.36 -0.24 16 2 C 0.07 0.45 4.26 -25.83 -0.11 0.34 16 3 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.10 -0.62 6.65 -26.50 -0.18 -0.80 16 5 C -0.19 -1.80 6.25 -104.13 -0.65 -2.45 16 6 C 0.00 -0.02 9.58 -39.32 -0.38 -0.40 16 7 C -0.16 -1.88 5.88 -104.94 -0.62 -2.50 16 8 C 0.51 7.40 7.89 34.49 0.27 7.67 16 9 O -0.51 -8.03 16.15 -19.27 -0.31 -8.34 16 10 O -0.32 -5.17 9.01 -47.30 -0.43 -5.59 16 11 C 0.05 0.76 5.95 36.01 0.21 0.98 16 12 C 0.50 9.95 7.91 -10.99 -0.09 9.86 16 13 O -0.53 -12.89 16.50 -14.10 -0.23 -13.12 16 14 N -0.71 -14.52 5.55 -61.47 -0.34 -14.86 16 15 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 16 C -0.55 -14.57 9.28 -34.44 -0.32 -14.88 16 17 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.77 13.29 55.43 0.74 -25.03 16 20 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.02 -0.20 9.59 -39.28 -0.38 -0.58 16 25 C -0.15 -1.51 10.05 -39.35 -0.40 -1.91 16 26 C 0.14 1.44 7.05 -38.71 -0.27 1.17 16 27 O -0.30 -2.77 10.79 -19.66 -0.21 -2.99 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.49 7.93 -51.93 -0.41 0.08 16 32 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.14 1.34 7.66 -52.49 -0.40 0.94 16 34 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.39 6.78 8.32 -40.82 -0.34 6.44 16 37 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.16 1.72 7.61 -52.49 -0.40 1.33 16 41 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -33.96 361.70 -8.34 -42.30 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.31 Total: 2.16 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -2.66 Total: 4.41 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.40 Total: -39.89 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -1.18 Total: -30.04 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.96 -8.34 -42.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850061543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.709 kcal (2) G-P(sol) polarization free energy of solvation -33.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds