Wall clock time and date at job start Tue Mar 31 2020 14:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.65749 * 2 1 4 4 C 1.54707 * 110.73836 * 236.80654 * 2 1 3 5 5 C 1.51682 * 101.87814 * 216.23955 * 4 2 1 6 6 C 1.37280 * 132.06574 * 195.74766 * 5 4 2 7 7 C 1.39872 * 119.85042 * 179.57805 * 6 5 4 8 8 C 1.47469 * 120.27192 * 179.97438 * 7 6 5 9 9 O 1.21506 * 119.99820 * 0.02562 * 8 7 6 10 10 O 1.34748 * 120.00185 * 180.02562 * 8 7 6 11 11 C 1.45202 * 117.00040 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.46836 * 179.97438 * 11 10 8 13 13 O 1.21279 * 120.00340 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99644 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99947 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.46829 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00767 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99714 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00148 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00049 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47086 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47432 * 120.00199 * 20 18 16 23 23 H 1.48507 * 109.46828 * 240.00052 * 20 18 16 24 24 C 1.39810 * 119.45796 * 0.02562 * 7 6 5 25 25 C 1.37452 * 120.19852 * 0.17542 * 24 7 6 26 26 C 1.39201 * 106.98223 * 15.72197 * 5 4 2 27 27 O 1.35973 * 111.19344 * 0.61814 * 26 5 4 28 28 H 1.08993 * 109.47090 * 183.19797 * 1 2 3 29 29 H 1.08997 * 109.46906 * 303.19336 * 1 2 3 30 30 H 1.08999 * 109.47403 * 63.19248 * 1 2 3 31 31 H 1.08997 * 110.94712 * 334.38920 * 4 2 1 32 32 H 1.08997 * 110.94879 * 98.09710 * 4 2 1 33 33 H 1.07990 * 120.07565 * 359.62513 * 6 5 4 34 34 H 1.09003 * 109.47033 * 299.99417 * 11 10 8 35 35 H 1.09005 * 109.47106 * 59.99665 * 11 10 8 36 36 H 0.96999 * 120.00233 * 359.97438 * 14 12 11 37 37 H 1.09003 * 109.46836 * 299.99866 * 15 14 12 38 38 H 1.08993 * 109.46851 * 59.99883 * 15 14 12 39 39 H 0.96998 * 120.00458 * 179.97438 * 19 18 16 40 40 H 1.07996 * 119.90639 * 180.19782 * 24 7 6 41 41 H 1.07990 * 119.78193 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0778 -0.7921 -1.2107 5 6 3.3080 -1.4542 -0.6199 6 6 4.3945 -2.0604 -1.2002 7 6 5.4086 -2.5898 -0.3953 8 6 6.5795 -3.2434 -1.0088 9 8 6.6664 -3.3234 -2.2181 10 8 7.5531 -3.7520 -0.2282 11 6 8.6756 -4.3816 -0.9005 12 6 9.6566 -4.8868 0.1258 13 8 9.4317 -4.7320 1.3075 14 7 10.7835 -5.5116 -0.2695 15 6 11.7370 -6.0033 0.7283 16 6 12.9020 -6.6566 0.0305 17 1 12.9294 -6.7015 -1.0482 18 6 13.9331 -7.1970 0.7692 19 7 13.8997 -7.1428 2.0829 20 14 15.3776 -8.0061 -0.0956 21 1 15.1762 -7.9376 -1.5653 22 1 16.6314 -7.2975 0.2662 23 1 15.4733 -9.4273 0.3247 24 6 5.3025 -2.4951 0.9955 25 6 4.2082 -1.8896 1.5658 26 6 3.1932 -1.3636 0.7644 27 8 2.0391 -0.7399 1.1222 28 1 -0.3633 -1.0260 0.0573 29 1 -0.3633 0.5626 0.8600 30 1 -0.3634 0.4635 -0.9172 31 1 1.3573 -1.5378 -1.5468 32 1 2.3499 -0.1205 -2.0250 33 1 4.4664 -2.1277 -2.2756 34 1 8.3168 -5.2165 -1.5025 35 1 9.1676 -3.6536 -1.5455 36 1 10.9628 -5.6365 -1.2145 37 1 12.0960 -5.1683 1.3300 38 1 11.2448 -6.7310 1.3734 39 1 14.6249 -7.5233 2.6027 40 1 6.0828 -2.8985 1.6237 41 1 4.1334 -1.8198 2.6409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850061543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:40 Heat of formation + Delta-G solvation = -153.510233 kcal Electronic energy + Delta-G solvation = -24900.475558 eV Core-core repulsion = 20937.921467 eV Total energy + Delta-G solvation = -3962.554091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.38235 -41.62476 -40.38696 -38.54608 -37.48089 -36.18201 -34.41725 -34.26661 -32.43231 -31.64226 -30.68846 -28.61570 -27.58947 -25.36040 -24.43240 -23.03431 -22.71873 -21.97326 -21.64490 -19.38815 -19.00828 -18.59772 -18.10004 -17.82800 -17.64347 -17.24447 -16.94823 -16.39991 -16.17920 -16.08792 -15.31372 -15.18517 -14.74542 -14.62000 -14.41529 -14.22544 -14.09816 -13.94771 -13.76912 -13.70346 -13.40327 -13.35438 -12.98111 -12.91196 -12.75600 -12.26105 -12.22318 -11.93177 -11.91170 -11.82896 -11.74871 -11.46811 -10.91756 -10.82993 -10.11647 -9.93017 -9.38146 -8.29668 -6.46163 -0.47513 0.16992 1.18120 1.31535 1.45030 1.45271 1.55337 1.59089 2.07845 2.33746 2.55481 2.56617 3.05773 3.31420 3.47035 3.55834 3.70433 3.73588 3.98930 4.01553 4.04867 4.05923 4.17614 4.20462 4.42455 4.63568 4.72653 4.80868 4.83509 4.96105 5.05306 5.07395 5.12077 5.16662 5.22168 5.22543 5.24692 5.40253 5.42061 5.63080 5.82174 6.00312 6.51724 6.63221 6.78049 7.20471 7.35588 8.82643 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.046730 B = 0.001847 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.045393 B =15156.738921 C =15705.418676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 H 0.103 0.897 4 C -0.099 4.099 5 C -0.194 4.194 6 C -0.002 4.002 7 C -0.175 4.175 8 C 0.517 3.483 9 O -0.527 6.527 10 O -0.342 6.342 11 C 0.061 3.939 12 C 0.500 3.500 13 O -0.582 6.582 14 N -0.698 5.698 15 C 0.266 3.734 16 C -0.557 4.557 17 H 0.086 0.914 18 C 0.004 3.996 19 N -0.930 5.930 20 Si 0.985 3.015 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.280 1.280 24 C -0.024 4.024 25 C -0.157 4.157 26 C 0.140 3.860 27 O -0.311 6.311 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.149 0.851 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.413 0.587 37 H -0.007 1.007 38 H -0.007 1.007 39 H 0.269 0.731 40 H 0.147 0.853 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.998 15.087 -9.771 32.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.121 0.879 4 C -0.136 4.136 5 C -0.194 4.194 6 C -0.021 4.021 7 C -0.176 4.176 8 C 0.364 3.636 9 O -0.418 6.418 10 O -0.258 6.258 11 C -0.016 4.016 12 C 0.286 3.714 13 O -0.463 6.463 14 N -0.350 5.350 15 C 0.143 3.857 16 C -0.595 4.595 17 H 0.104 0.896 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.809 3.191 21 H -0.176 1.176 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.042 4.042 25 C -0.175 4.175 26 C 0.093 3.907 27 O -0.225 6.225 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.135 0.865 33 H 0.167 0.833 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.249 0.751 37 H 0.011 0.989 38 H 0.011 0.989 39 H 0.078 0.922 40 H 0.165 0.835 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -27.138 15.122 -8.921 32.322 hybrid contribution 1.253 -0.688 -0.268 1.454 sum -25.885 14.434 -9.189 31.029 Atomic orbital electron populations 1.21929 0.90159 1.03679 1.04631 1.23808 0.97301 0.95691 0.81966 0.87945 1.22009 0.92858 0.99833 0.98908 1.20941 0.98670 1.05954 0.93879 1.20365 0.89485 0.91463 1.00746 1.18874 0.95199 1.09074 0.94475 1.21278 0.82179 0.75203 0.84894 1.90811 1.78687 1.56721 1.15612 1.86589 1.30386 1.68163 1.40647 1.22779 0.85131 1.00613 0.93064 1.20650 0.82735 0.78487 0.89523 1.90682 1.76879 1.58541 1.20190 1.46032 1.20174 1.56930 1.11836 1.18643 0.86748 0.92595 0.87679 1.21652 1.04632 1.38604 0.94563 0.89563 1.26050 1.01734 0.96263 0.95478 1.70137 1.34192 1.45663 1.06859 0.85097 0.77367 0.77531 0.79129 1.17638 1.20517 1.20536 1.21319 0.96666 0.92767 0.93472 1.20418 0.91992 1.03788 1.01316 1.20121 0.86175 0.91090 0.93271 1.86827 1.33857 1.61834 1.39957 0.91789 0.91101 0.87712 0.87578 0.86509 0.83345 0.85660 0.85641 0.75100 0.98902 0.98910 0.92215 0.83548 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.58 71.98 0.69 -0.09 16 2 C 0.07 0.65 4.26 31.18 0.13 0.78 16 3 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.10 -0.93 6.65 30.74 0.20 -0.72 16 5 C -0.19 -3.26 6.25 -19.55 -0.12 -3.39 16 6 C 0.00 -0.05 9.58 22.44 0.21 0.17 16 7 C -0.17 -4.22 5.88 -20.07 -0.12 -4.34 16 8 C 0.52 14.70 7.89 70.25 0.55 15.25 16 9 O -0.53 -15.90 16.15 19.82 0.32 -15.58 16 10 O -0.34 -10.88 9.01 -50.20 -0.45 -11.33 16 11 C 0.06 1.79 5.95 71.24 0.42 2.21 16 12 C 0.50 20.13 7.91 87.66 0.69 20.83 16 13 O -0.58 -29.28 16.50 15.77 0.26 -29.02 16 14 N -0.70 -28.86 5.55 -466.79 -2.59 -31.45 16 15 C 0.27 14.36 5.43 85.63 0.46 14.83 16 16 C -0.56 -29.80 9.28 25.60 0.24 -29.57 16 17 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 18 C 0.00 0.25 5.46 84.65 0.46 0.71 16 19 N -0.93 -55.57 13.29 21.45 0.28 -55.29 16 20 Si 0.99 41.92 29.54 68.60 2.03 43.95 16 21 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 24 C -0.02 -0.55 9.59 22.46 0.22 -0.33 16 25 C -0.16 -3.10 10.05 22.42 0.23 -2.87 16 26 C 0.14 2.66 7.05 22.83 0.16 2.82 16 27 O -0.31 -5.35 10.79 -93.25 -1.01 -6.36 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.11 0.78 7.93 -2.39 -0.02 0.76 16 32 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.15 2.62 7.66 -2.92 -0.02 2.60 16 34 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.13 3.04 8.14 -2.38 -0.02 3.02 16 36 H 0.41 13.71 8.32 -92.71 -0.77 12.94 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.27 14.98 8.31 -92.71 -0.77 14.20 16 40 H 0.15 3.49 7.61 -2.91 -0.02 3.46 16 41 H 0.15 2.48 8.06 -2.92 -0.02 2.46 16 Total: -1.00 -75.77 361.70 3.58 -72.20 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.29 Total: 16.61 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 4.44 Total: 16.28 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -2.30 Total: -86.74 kcal Atomic # 8 Polarization: -61.42 SS G_CDS: -0.88 Total: -62.29 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -75.77 3.58 -72.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850061543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.315 kcal (2) G-P(sol) polarization free energy of solvation -75.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds