Wall clock time and date at job start Tue Mar 31 2020 12:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 110.43061 * 2 1 4 4 O 1.45200 * 109.47106 * 302.54358 * 3 2 1 5 5 C 1.34760 * 116.99932 * 180.02562 * 4 3 2 6 6 O 1.21518 * 120.00075 * 359.97438 * 5 4 3 7 7 C 1.47395 * 120.00043 * 179.97438 * 5 4 3 8 8 C 1.39726 * 120.20246 * 0.02562 * 7 5 4 9 9 C 1.37807 * 119.91344 * 179.97438 * 8 7 5 10 10 C 1.38589 * 120.32863 * 0.02889 * 9 8 7 11 11 C 1.38016 * 120.41611 * 359.95267 * 10 9 8 12 12 C 1.38833 * 120.07852 * 0.04669 * 11 10 9 13 13 O 1.35508 * 120.16220 * 180.25831 * 12 11 10 14 14 C 1.34808 * 117.00391 * 354.40016 * 13 12 11 15 15 H 1.08000 * 119.99615 * 5.08035 * 14 13 12 16 16 C 1.38702 * 120.00199 * 185.07560 * 14 13 12 17 17 N 1.31521 * 119.99875 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00058 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46958 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46951 * 120.00023 * 18 16 14 21 21 H 1.48496 * 109.47154 * 240.00254 * 18 16 14 22 22 C 1.54628 * 110.48550 * 122.53729 * 2 1 3 23 23 C 1.54479 * 101.76281 * 94.01918 * 22 2 1 24 24 N 1.46764 * 105.47493 * 25.41303 * 23 22 2 25 25 C 1.34418 * 111.29823 * 342.98714 * 24 23 22 26 26 O 1.21289 * 124.94045 * 180.44126 * 25 24 23 27 27 H 1.09001 * 109.46967 * 59.30430 * 1 2 3 28 28 H 1.09000 * 109.46354 * 179.29790 * 1 2 3 29 29 H 1.08998 * 109.47320 * 299.29243 * 1 2 3 30 30 H 1.08999 * 109.47135 * 182.53558 * 3 2 1 31 31 H 1.09008 * 109.47027 * 62.54280 * 3 2 1 32 32 H 1.08005 * 120.04495 * 0.02562 * 8 7 5 33 33 H 1.07999 * 119.83149 * 180.02562 * 9 8 7 34 34 H 1.08001 * 119.78938 * 179.97438 * 10 9 8 35 35 H 1.08005 * 119.95981 * 180.02562 * 11 10 9 36 36 H 0.96994 * 119.99588 * 179.97438 * 17 16 14 37 37 H 1.08999 * 110.97123 * 212.13510 * 22 2 1 38 38 H 1.08997 * 110.97128 * 335.86354 * 22 2 1 39 39 H 1.09000 * 110.24789 * 144.41389 * 23 22 2 40 40 H 1.08995 * 110.24647 * 266.32844 * 23 22 2 41 41 H 0.96996 * 124.35336 * 162.98237 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0641 1.4338 0.0000 4 8 1.5430 2.1444 -1.1540 5 6 1.9208 3.4293 -1.3031 6 8 2.6650 3.9421 -0.4907 7 6 1.4313 4.2129 -2.4516 8 6 0.5750 3.6278 -3.3880 9 6 0.1206 4.3660 -4.4592 10 6 0.5091 5.6873 -4.6137 11 6 1.3541 6.2790 -3.6968 12 6 1.8222 5.5511 -2.6112 13 8 2.6477 6.1319 -1.7070 14 6 3.0705 7.3827 -1.9791 15 1 2.6861 7.9069 -2.8415 16 6 3.9990 7.9964 -1.1514 17 7 4.4674 7.3577 -0.1014 18 14 4.5843 9.7299 -1.5281 19 1 3.9099 10.2243 -2.7552 20 1 4.2536 10.6225 -0.3883 21 1 6.0540 9.7210 -1.7398 22 6 2.0712 -0.7791 1.2211 23 6 2.2807 -2.1896 0.6272 24 7 2.4804 -1.9828 -0.8120 25 6 2.0624 -0.7633 -1.1927 26 8 2.1051 -0.3371 -2.3274 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3632 -1.0276 -0.0126 29 1 -0.3634 0.5028 0.8962 30 1 3.1530 1.4159 -0.0455 31 1 1.7469 1.9397 0.9120 32 1 0.2691 2.5985 -3.2719 33 1 -0.5415 3.9125 -5.1820 34 1 0.1480 6.2577 -5.4567 35 1 1.6518 7.3093 -3.8241 36 1 5.1169 7.7868 0.4772 37 1 3.0151 -0.3570 1.5661 38 1 1.3377 -0.7996 2.0271 39 1 3.1618 -2.6570 1.0669 40 1 1.3998 -2.8072 0.8021 41 1 2.8647 -2.6414 -1.4115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853172807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:31 Heat of formation + Delta-G solvation = -116.269903 kcal Electronic energy + Delta-G solvation = -26850.321966 eV Core-core repulsion = 22889.382737 eV Total energy + Delta-G solvation = -3960.939229 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.84042 -39.62283 -38.49818 -36.54147 -36.34441 -35.55730 -33.38889 -32.36082 -30.60014 -28.98461 -28.89167 -27.09472 -25.44705 -24.80485 -23.09094 -22.13675 -21.49527 -20.08512 -19.19668 -18.00556 -17.60269 -17.20254 -16.50968 -16.38015 -15.88448 -15.43101 -14.87808 -14.58404 -14.36731 -14.11379 -14.05722 -13.87197 -13.59519 -13.50558 -13.22102 -12.92549 -12.55338 -12.53174 -12.30500 -12.17803 -11.88803 -11.71504 -11.31783 -11.19961 -11.09174 -10.98847 -10.89565 -10.69240 -10.43824 -10.07245 -9.68003 -9.61079 -9.26672 -9.17227 -8.89261 -8.24504 -7.31338 -6.46841 -4.06418 1.68657 2.38226 2.57058 3.11350 3.12563 3.17750 3.18073 3.28102 3.55050 3.92393 4.13620 4.15845 4.51674 4.62628 4.73684 4.89232 5.05004 5.06587 5.18976 5.20394 5.42760 5.50352 5.55335 5.60290 5.62901 5.66963 5.74633 5.77883 5.88596 6.10563 6.17672 6.21802 6.64449 6.67184 6.73132 6.86110 6.96214 7.08038 7.18397 7.29687 7.37172 7.73135 7.92229 8.22188 8.81526 8.93912 9.64193 10.67282 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.003577 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.275066 B = 7826.256710 C = 9065.701831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 C 0.091 3.909 4 O -0.349 6.349 5 C 0.499 3.501 6 O -0.481 6.481 7 C -0.213 4.213 8 C -0.012 4.012 9 C -0.235 4.235 10 C -0.044 4.044 11 C -0.241 4.241 12 C 0.192 3.808 13 O -0.127 6.127 14 C -0.402 4.402 15 H 0.096 0.904 16 C 0.044 3.956 17 N -0.834 5.834 18 Si 0.942 3.058 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.274 1.274 22 C -0.127 4.127 23 C 0.105 3.895 24 N -0.740 5.740 25 C 0.525 3.475 26 O -0.502 6.502 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.271 0.729 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.698 -16.474 1.949 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.098 4.098 3 C 0.016 3.984 4 O -0.267 6.267 5 C 0.345 3.655 6 O -0.368 6.368 7 C -0.216 4.216 8 C -0.030 4.030 9 C -0.254 4.254 10 C -0.062 4.062 11 C -0.260 4.260 12 C 0.133 3.867 13 O -0.026 6.026 14 C -0.478 4.478 15 H 0.113 0.887 16 C -0.163 4.163 17 N -0.465 5.465 18 Si 0.766 3.234 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.165 4.165 23 C -0.020 4.020 24 N -0.397 5.397 25 C 0.310 3.690 26 O -0.375 6.375 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.144 0.856 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.151 0.849 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -6.193 -16.024 2.136 17.312 hybrid contribution 0.618 0.484 -0.291 0.837 sum -5.576 -15.541 1.845 16.613 Atomic orbital electron populations 1.21655 0.90689 1.02164 1.04095 1.21472 0.98884 0.94522 0.94879 1.22607 0.98492 0.88797 0.88540 1.86589 1.68453 1.25838 1.45799 1.21097 0.79177 0.79497 0.85777 1.90991 1.33128 1.70079 1.42609 1.18033 1.11805 0.92070 0.99695 1.21009 0.91903 0.98559 0.91523 1.20547 1.08114 0.95425 1.01270 1.20958 0.94104 0.94531 0.96637 1.21095 1.05417 1.01653 0.97852 1.19241 0.89303 0.89986 0.88165 1.84147 1.51269 1.29000 1.38141 1.21571 1.24606 0.88494 1.13118 0.88654 1.25403 0.95597 1.00165 0.95175 1.70133 1.26730 1.37003 1.12680 0.85637 0.78868 0.80036 0.78815 1.18905 1.19995 1.19992 1.22743 1.03180 0.93843 0.96704 1.22006 1.01963 0.97453 0.80554 1.46217 1.65496 1.17405 1.10582 1.20640 0.76892 0.81875 0.89641 1.90807 1.54172 1.71117 1.21369 0.90480 0.92333 0.91127 0.91448 0.90454 0.85587 0.87025 0.87019 0.84873 0.91886 0.89335 0.88439 0.90193 0.91015 0.75267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.36 37.16 0.31 -1.03 16 2 C -0.09 -1.11 0.72 -154.52 -0.11 -1.22 16 3 C 0.09 1.46 4.29 37.16 0.16 1.62 16 4 O -0.35 -6.94 7.92 -45.29 -0.36 -7.30 16 5 C 0.50 11.99 7.89 34.46 0.27 12.26 16 6 O -0.48 -13.39 14.96 -26.60 -0.40 -13.79 16 7 C -0.21 -5.05 5.89 -104.83 -0.62 -5.67 16 8 C -0.01 -0.23 9.61 -39.18 -0.38 -0.61 16 9 C -0.23 -4.22 10.02 -39.61 -0.40 -4.62 16 10 C -0.04 -0.81 10.03 -39.53 -0.40 -1.21 16 11 C -0.24 -5.34 9.16 -39.44 -0.36 -5.70 16 12 C 0.19 4.94 6.66 -38.58 -0.26 4.69 16 13 O -0.13 -3.81 7.84 -21.01 -0.16 -3.97 16 14 C -0.40 -11.47 9.49 30.90 0.29 -11.17 16 15 H 0.10 2.47 5.21 -52.49 -0.27 2.19 16 16 C 0.04 1.23 5.49 -17.51 -0.10 1.14 16 17 N -0.83 -25.11 13.67 55.48 0.76 -24.35 16 18 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 C -0.13 -0.95 6.23 -25.10 -0.16 -1.10 16 23 C 0.11 0.64 7.78 -3.12 -0.02 0.61 16 24 N -0.74 -6.91 6.24 -59.21 -0.37 -7.28 16 25 C 0.52 7.26 7.18 -10.86 -0.08 7.18 16 26 O -0.50 -9.37 17.15 -5.90 -0.10 -9.47 16 27 H 0.08 0.98 7.66 -51.93 -0.40 0.58 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 32 H 0.13 2.28 7.61 -52.48 -0.40 1.88 16 33 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.13 2.87 5.64 -52.48 -0.30 2.57 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.09 0.66 7.91 -51.93 -0.41 0.25 16 38 H 0.10 0.51 7.90 -51.93 -0.41 0.10 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.41 3.18 8.96 -40.82 -0.37 2.81 16 LS Contribution 351.60 15.07 5.30 5.30 Total: -1.00 -37.39 351.60 -7.26 -44.66 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.07 Total: 5.49 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -1.84 Total: -4.83 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: 0.39 Total: -31.64 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -1.02 Total: -34.53 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.39 -7.26 -44.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853172807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.613 kcal (2) G-P(sol) polarization free energy of solvation -37.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds