Wall clock time and date at job start Tue Mar 31 2020 12:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 110.43061 * 2 1 4 4 O 1.45200 * 109.47106 * 302.54358 * 3 2 1 5 5 C 1.34760 * 116.99932 * 180.02562 * 4 3 2 6 6 O 1.21518 * 120.00075 * 359.97438 * 5 4 3 7 7 C 1.47395 * 120.00043 * 179.97438 * 5 4 3 8 8 C 1.39726 * 120.20246 * 0.02562 * 7 5 4 9 9 C 1.37807 * 119.91344 * 179.97438 * 8 7 5 10 10 C 1.38589 * 120.32863 * 0.02889 * 9 8 7 11 11 C 1.38016 * 120.41611 * 359.95267 * 10 9 8 12 12 C 1.38833 * 120.07852 * 0.04669 * 11 10 9 13 13 O 1.35508 * 120.16220 * 180.25831 * 12 11 10 14 14 C 1.34808 * 117.00391 * 354.40016 * 13 12 11 15 15 H 1.08000 * 119.99615 * 5.08035 * 14 13 12 16 16 C 1.38702 * 120.00199 * 185.07560 * 14 13 12 17 17 N 1.31521 * 119.99875 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00058 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46958 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46951 * 120.00023 * 18 16 14 21 21 H 1.48496 * 109.47154 * 240.00254 * 18 16 14 22 22 C 1.54628 * 110.48550 * 122.53729 * 2 1 3 23 23 C 1.54479 * 101.76281 * 94.01918 * 22 2 1 24 24 N 1.46764 * 105.47493 * 25.41303 * 23 22 2 25 25 C 1.34418 * 111.29823 * 342.98714 * 24 23 22 26 26 O 1.21289 * 124.94045 * 180.44126 * 25 24 23 27 27 H 1.09001 * 109.46967 * 59.30430 * 1 2 3 28 28 H 1.09000 * 109.46354 * 179.29790 * 1 2 3 29 29 H 1.08998 * 109.47320 * 299.29243 * 1 2 3 30 30 H 1.08999 * 109.47135 * 182.53558 * 3 2 1 31 31 H 1.09008 * 109.47027 * 62.54280 * 3 2 1 32 32 H 1.08005 * 120.04495 * 0.02562 * 8 7 5 33 33 H 1.07999 * 119.83149 * 180.02562 * 9 8 7 34 34 H 1.08001 * 119.78938 * 179.97438 * 10 9 8 35 35 H 1.08005 * 119.95981 * 180.02562 * 11 10 9 36 36 H 0.96994 * 119.99588 * 179.97438 * 17 16 14 37 37 H 1.08999 * 110.97123 * 212.13510 * 22 2 1 38 38 H 1.08997 * 110.97128 * 335.86354 * 22 2 1 39 39 H 1.09000 * 110.24789 * 144.41389 * 23 22 2 40 40 H 1.08995 * 110.24647 * 266.32844 * 23 22 2 41 41 H 0.96996 * 124.35336 * 162.98237 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0641 1.4338 0.0000 4 8 1.5430 2.1444 -1.1540 5 6 1.9208 3.4293 -1.3031 6 8 2.6650 3.9421 -0.4907 7 6 1.4313 4.2129 -2.4516 8 6 0.5750 3.6278 -3.3880 9 6 0.1206 4.3660 -4.4592 10 6 0.5091 5.6873 -4.6137 11 6 1.3541 6.2790 -3.6968 12 6 1.8222 5.5511 -2.6112 13 8 2.6477 6.1319 -1.7070 14 6 3.0705 7.3827 -1.9791 15 1 2.6861 7.9069 -2.8415 16 6 3.9990 7.9964 -1.1514 17 7 4.4674 7.3577 -0.1014 18 14 4.5843 9.7299 -1.5281 19 1 3.9099 10.2243 -2.7552 20 1 4.2536 10.6225 -0.3883 21 1 6.0540 9.7210 -1.7398 22 6 2.0712 -0.7791 1.2211 23 6 2.2807 -2.1896 0.6272 24 7 2.4804 -1.9828 -0.8120 25 6 2.0624 -0.7633 -1.1927 26 8 2.1051 -0.3371 -2.3274 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3632 -1.0276 -0.0126 29 1 -0.3634 0.5028 0.8962 30 1 3.1530 1.4159 -0.0455 31 1 1.7469 1.9397 0.9120 32 1 0.2691 2.5985 -3.2719 33 1 -0.5415 3.9125 -5.1820 34 1 0.1480 6.2577 -5.4567 35 1 1.6518 7.3093 -3.8241 36 1 5.1169 7.7868 0.4772 37 1 3.0151 -0.3570 1.5661 38 1 1.3377 -0.7996 2.0271 39 1 3.1618 -2.6570 1.0669 40 1 1.3998 -2.8072 0.8021 41 1 2.8647 -2.6414 -1.4115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853172807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:30 Heat of formation + Delta-G solvation = -143.105356 kcal Electronic energy + Delta-G solvation = -26851.485638 eV Core-core repulsion = 22889.382737 eV Total energy + Delta-G solvation = -3962.102902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.93899 -41.31374 -40.27918 -38.15098 -37.65691 -37.21754 -34.43907 -34.36844 -32.29107 -30.65890 -29.72214 -28.27361 -27.42283 -25.91682 -24.68353 -23.30622 -22.86448 -21.77858 -20.24995 -19.91529 -19.24166 -18.35746 -18.24843 -17.55310 -17.41182 -16.76994 -16.39143 -16.15555 -16.03658 -15.60761 -15.42544 -15.21099 -15.05154 -14.91152 -14.47306 -14.25633 -14.08896 -13.71411 -13.57687 -13.21599 -13.12868 -13.07246 -12.99566 -12.72229 -12.58281 -12.39677 -12.11634 -12.07742 -11.94851 -11.64708 -11.59367 -11.05249 -10.87382 -10.72769 -10.05932 -9.94020 -9.13624 -8.48968 -6.20195 -0.05729 0.66820 1.33016 1.43630 1.48182 1.53244 1.71889 1.77717 2.13921 2.39201 2.81023 3.13380 3.21981 3.34184 3.35724 3.65735 3.89460 3.97421 4.06208 4.11766 4.23494 4.25776 4.31278 4.49989 4.52310 4.60947 4.72987 4.78163 4.85076 4.92092 5.03080 5.05182 5.07515 5.11277 5.27981 5.37462 5.46317 5.58883 5.64079 5.88026 5.92930 6.01196 6.10139 6.89545 6.98896 7.26442 7.70857 8.71664 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.003577 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.275066 B = 7826.256710 C = 9065.701831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.091 4.091 3 C 0.081 3.919 4 O -0.340 6.340 5 C 0.497 3.503 6 O -0.533 6.533 7 C -0.238 4.238 8 C -0.012 4.012 9 C -0.205 4.205 10 C -0.026 4.026 11 C -0.255 4.255 12 C 0.159 3.841 13 O -0.187 6.187 14 C -0.429 4.429 15 H 0.112 0.888 16 C -0.020 4.020 17 N -0.904 5.904 18 Si 1.025 2.975 19 H -0.244 1.244 20 H -0.267 1.267 21 H -0.269 1.269 22 C -0.121 4.121 23 C 0.103 3.897 24 N -0.725 5.725 25 C 0.512 3.488 26 O -0.565 6.565 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.144 0.856 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.134 0.866 36 H 0.273 0.727 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.027 -18.112 0.482 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.095 4.095 3 C 0.006 3.994 4 O -0.257 6.257 5 C 0.345 3.655 6 O -0.424 6.424 7 C -0.240 4.240 8 C -0.030 4.030 9 C -0.223 4.223 10 C -0.044 4.044 11 C -0.274 4.274 12 C 0.104 3.896 13 O -0.089 6.089 14 C -0.504 4.504 15 H 0.129 0.871 16 C -0.220 4.220 17 N -0.539 5.539 18 Si 0.843 3.157 19 H -0.167 1.167 20 H -0.192 1.192 21 H -0.194 1.194 22 C -0.159 4.159 23 C -0.020 4.020 24 N -0.381 5.381 25 C 0.298 3.702 26 O -0.443 6.443 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.162 0.838 33 H 0.181 0.819 34 H 0.181 0.819 35 H 0.152 0.848 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.148 0.852 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -8.576 -17.762 0.656 19.735 hybrid contribution 1.104 0.637 0.008 1.275 sum -7.472 -17.125 0.664 18.696 Atomic orbital electron populations 1.21672 0.89328 1.03823 1.03507 1.21571 0.99959 0.91451 0.96518 1.23007 0.97693 0.91346 0.87329 1.86584 1.67859 1.23921 1.47375 1.21416 0.78190 0.80529 0.85377 1.90964 1.35494 1.71421 1.44477 1.18487 1.12920 0.91944 1.00697 1.21314 0.90898 0.99605 0.91228 1.21191 1.06097 0.94817 1.00233 1.21522 0.91471 0.94954 0.96406 1.21301 1.06480 1.01812 0.97798 1.19932 0.89300 0.91191 0.89209 1.84148 1.54127 1.30024 1.40621 1.22161 1.25397 0.88826 1.14058 0.87090 1.26813 0.95308 1.05235 0.94616 1.70314 1.28866 1.39795 1.14920 0.84462 0.78299 0.73475 0.79445 1.16678 1.19174 1.19446 1.22879 1.03751 0.93653 0.95578 1.22359 1.04737 0.96861 0.77995 1.46252 1.63440 1.15951 1.12433 1.21044 0.76759 0.83224 0.89220 1.90759 1.57075 1.72768 1.23731 0.93328 0.89436 0.89539 0.93493 0.89975 0.83789 0.81924 0.81907 0.84828 0.91821 0.89688 0.85208 0.87446 0.87905 0.74328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.36 71.98 0.60 -1.82 16 2 C -0.09 -2.10 0.72 -52.19 -0.04 -2.14 16 3 C 0.08 2.74 4.29 71.98 0.31 3.05 16 4 O -0.34 -14.33 7.92 -52.29 -0.41 -14.74 16 5 C 0.50 25.61 7.89 70.23 0.55 26.17 16 6 O -0.53 -32.40 14.96 26.77 0.40 -32.00 16 7 C -0.24 -11.70 5.89 -20.00 -0.12 -11.82 16 8 C -0.01 -0.47 9.61 22.53 0.22 -0.26 16 9 C -0.21 -6.48 10.02 22.25 0.22 -6.25 16 10 C -0.03 -0.85 10.03 22.30 0.22 -0.62 16 11 C -0.25 -11.19 9.16 22.36 0.20 -10.98 16 12 C 0.16 8.56 6.66 22.92 0.15 8.71 16 13 O -0.19 -12.05 7.84 1.04 0.01 -12.04 16 14 C -0.43 -25.92 9.49 67.93 0.64 -25.28 16 15 H 0.11 5.97 5.21 -2.91 -0.02 5.96 16 16 C -0.02 -1.19 5.49 84.85 0.47 -0.72 16 17 N -0.90 -58.58 13.67 21.62 0.30 -58.28 16 18 Si 1.03 43.81 29.55 68.60 2.03 45.83 16 19 H -0.24 -9.39 7.11 99.48 0.71 -8.69 16 20 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 22 C -0.12 -1.49 6.23 31.65 0.20 -1.29 16 23 C 0.10 0.86 7.78 86.83 0.68 1.53 16 24 N -0.73 -12.17 6.24 -459.81 -2.87 -15.04 16 25 C 0.51 14.07 7.18 87.90 0.63 14.70 16 26 O -0.57 -21.83 17.15 7.89 0.14 -21.70 16 27 H 0.05 1.21 7.66 -2.39 -0.02 1.19 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 32 H 0.14 4.99 7.61 -2.91 -0.02 4.97 16 33 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 34 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 35 H 0.13 5.75 5.64 -2.91 -0.02 5.74 16 36 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 37 H 0.08 1.14 7.91 -2.39 -0.02 1.12 16 38 H 0.13 0.82 7.90 -2.39 -0.02 0.80 16 39 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.42 5.76 8.96 -92.71 -0.83 4.92 16 Total: -1.00 -94.00 351.60 4.77 -89.23 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.25 Total: 25.77 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 4.94 Total: -7.02 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -2.57 Total: -73.32 kcal Atomic # 8 Polarization: -80.62 SS G_CDS: 0.13 Total: -80.49 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -94.00 4.77 -89.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853172807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.875 kcal (2) G-P(sol) polarization free energy of solvation -94.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds