Wall clock time and date at job start Tue Mar 31 2020 12:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31919 * 119.40397 * 2 1 4 4 C 1.32338 * 121.79954 * 180.02562 * 3 2 1 5 5 N 1.38453 * 119.81332 * 179.97438 * 4 3 2 6 6 C 1.46847 * 111.00392 * 62.10667 * 5 4 3 7 7 C 1.53038 * 109.52823 * 174.16070 * 6 5 4 8 8 C 1.53112 * 109.27529 * 59.17793 * 7 6 5 9 9 C 1.53119 * 109.16675 * 302.34851 * 8 7 6 10 10 H 1.09003 * 109.50099 * 297.71339 * 9 8 7 11 11 C 1.50698 * 109.53771 * 177.61339 * 9 8 7 12 12 H 1.07995 * 119.99831 * 240.17449 * 11 9 8 13 13 C 1.37876 * 119.99911 * 60.17830 * 11 9 8 14 14 N 1.31514 * 120.00206 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99970 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47282 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.46849 * 120.00206 * 15 13 11 18 18 H 1.48501 * 109.47398 * 239.99959 * 15 13 11 19 19 C 1.46849 * 111.00001 * 297.89897 * 5 4 3 20 20 C 1.40569 * 120.37467 * 359.97438 * 4 3 2 21 21 C 1.43203 * 120.60430 * 179.97438 * 20 4 3 22 22 N 4.76190 * 139.43774 * 0.02562 * 3 1 2 23 23 C 1.39929 * 118.79063 * 0.02562 * 20 4 3 24 24 C 1.50702 * 120.82429 * 180.02562 * 23 20 4 25 25 C 1.38395 * 119.39406 * 179.97438 * 2 1 3 26 26 Cl 1.73599 * 120.26022 * 0.28071 * 25 2 1 27 27 H 1.08992 * 109.47577 * 270.00910 * 1 2 3 28 28 H 1.09009 * 109.46868 * 30.00331 * 1 2 3 29 29 H 1.08997 * 109.47723 * 150.00083 * 1 2 3 30 30 H 1.09002 * 109.46324 * 294.18099 * 6 5 4 31 31 H 1.09008 * 109.46063 * 54.14522 * 6 5 4 32 32 H 1.09003 * 109.50007 * 299.24018 * 7 6 5 33 33 H 1.08994 * 109.50553 * 179.12374 * 7 6 5 34 34 H 1.09000 * 109.52114 * 182.44152 * 8 7 6 35 35 H 1.09000 * 109.57441 * 62.28369 * 8 7 6 36 36 H 0.97004 * 120.00608 * 179.97438 * 14 13 11 37 37 H 1.08998 * 109.46060 * 305.85153 * 19 5 4 38 38 H 1.08998 * 109.46431 * 65.83576 * 19 5 4 39 39 H 1.09005 * 109.47234 * 269.98021 * 24 23 20 40 40 H 1.09006 * 109.47158 * 29.97690 * 24 23 20 41 41 H 1.08994 * 109.47399 * 149.97685 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1546 1.1493 0.0000 4 6 3.4768 1.2046 -0.0005 5 7 4.1143 2.4336 -0.0010 6 6 3.7879 3.1964 1.2106 7 6 4.6195 4.4806 1.2461 8 6 4.3157 5.3142 -0.0017 9 6 4.6184 4.4800 -1.2495 10 1 5.6784 4.2267 -1.2695 11 6 4.2669 5.2719 -2.4826 12 1 3.5246 4.8970 -3.1716 13 6 4.8932 6.4748 -2.7311 14 7 5.7968 6.9315 -1.8918 15 14 4.4580 7.4560 -4.2599 16 1 3.4206 6.7298 -5.0355 17 1 3.9368 8.7882 -3.8613 18 1 5.6711 7.6298 -5.0985 19 6 3.7868 3.1958 -1.2127 20 6 4.2377 0.0226 -0.0005 21 6 5.6687 0.0767 -0.0016 22 7 6.8038 0.1197 -0.0014 23 6 3.5713 -1.2078 -0.0005 24 6 4.3415 -2.5032 0.0000 25 6 2.1862 -1.2058 0.0005 26 17 1.3091 -2.7039 -0.0061 27 1 -0.3634 0.0002 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8899 -0.5138 30 1 2.7278 3.4502 1.2053 31 1 4.0125 2.5938 2.0907 32 1 5.6795 4.2272 1.2654 33 1 4.3656 5.0540 2.1376 34 1 4.9379 6.2092 -0.0022 35 1 3.2643 5.6015 -0.0019 36 1 6.2377 7.7776 -2.0668 37 1 4.0107 2.5929 -2.0927 38 1 2.7268 3.4499 -1.2065 39 1 4.5273 -2.8159 -1.0275 40 1 5.2922 -2.3604 0.5139 41 1 3.7623 -3.2701 0.5141 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166741279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:51 Heat of formation + Delta-G solvation = 39.140561 kcal Electronic energy + Delta-G solvation = -24499.878157 eV Core-core repulsion = 21018.679947 eV Total energy + Delta-G solvation = -3481.198210 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.17782 -39.73398 -37.91974 -37.63607 -35.87731 -35.25378 -34.04216 -31.86671 -31.65835 -29.76546 -28.55898 -27.00495 -25.74129 -23.52935 -23.28654 -22.45413 -20.60390 -20.03578 -18.81746 -18.49141 -17.41626 -16.67723 -16.39652 -16.24497 -15.60881 -15.43972 -14.87579 -14.73567 -14.65017 -14.46057 -14.33485 -14.24680 -14.08808 -13.92372 -13.74229 -13.49723 -13.28690 -13.09071 -13.00380 -12.88130 -12.83645 -12.67663 -12.52187 -12.00424 -11.91854 -11.79426 -11.49078 -11.19915 -10.86124 -10.73625 -10.61763 -10.41949 -9.80807 -9.70439 -8.09995 -6.24324 -0.70470 -0.26121 0.84597 1.40126 1.41924 1.53215 1.61412 1.74747 2.36294 2.50642 2.51510 2.69631 3.16138 3.17732 3.27891 3.61866 3.93948 4.03670 4.14320 4.17826 4.28813 4.36535 4.53854 4.55950 4.58078 4.68450 4.74871 4.79036 4.83034 4.84841 4.88235 5.00921 5.07395 5.09612 5.27649 5.28031 5.45911 5.61742 5.74390 5.98650 6.12352 6.17906 6.36192 6.39014 6.61138 6.86512 7.43775 8.95163 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.017123 B = 0.003638 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.871003 B = 7693.926288 C = 8168.713758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.186 3.814 3 N -0.515 5.515 4 C 0.356 3.644 5 N -0.509 5.509 6 C 0.076 3.924 7 C -0.109 4.109 8 C -0.102 4.102 9 C 0.055 3.945 10 H -0.007 1.007 11 C -0.534 4.534 12 H 0.053 0.947 13 C 0.016 3.984 14 N -0.915 5.915 15 Si 0.955 3.045 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.283 1.283 19 C 0.096 3.904 20 C -0.073 4.073 21 C 0.291 3.709 22 N -0.443 5.443 23 C 0.033 3.967 24 C -0.127 4.127 25 C -0.105 4.105 26 Cl -0.016 7.016 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.032 0.968 36 H 0.261 0.739 37 H 0.048 0.952 38 H 0.039 0.961 39 H 0.105 0.895 40 H 0.074 0.926 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 -20.241 7.125 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.045 3.955 3 N -0.229 5.229 4 C 0.125 3.875 5 N -0.232 5.232 6 C -0.049 4.049 7 C -0.147 4.147 8 C -0.140 4.140 9 C 0.036 3.964 10 H 0.011 0.989 11 C -0.573 4.573 12 H 0.071 0.929 13 C -0.183 4.183 14 N -0.554 5.554 15 Si 0.781 3.219 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.209 1.209 19 C -0.030 4.030 20 C -0.081 4.081 21 C -0.025 4.025 22 N -0.119 5.119 23 C 0.022 3.978 24 C -0.183 4.183 25 C -0.134 4.134 26 Cl 0.013 6.987 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.359 -19.449 7.154 23.168 hybrid contribution -0.437 0.474 -0.939 1.139 sum -10.796 -18.975 6.216 22.699 Atomic orbital electron populations 1.21046 0.85336 1.05235 1.05332 1.21807 0.99026 0.85619 0.89024 1.68041 1.09219 1.29429 1.16167 1.20054 0.86773 0.91022 0.89671 1.60063 1.55354 1.02477 1.05347 1.22045 0.98670 0.94330 0.89901 1.21595 0.99163 0.95152 0.98785 1.21452 0.98973 0.99698 0.93925 1.18589 0.93477 0.90283 0.94066 0.98900 1.21454 1.22741 1.05406 1.07697 0.92921 1.25700 0.94752 0.98482 0.99356 1.70040 1.26975 1.20885 1.37472 0.85553 0.78068 0.78605 0.79712 1.19075 1.20350 1.20859 1.21982 0.98241 0.94445 0.88337 1.16513 0.85376 0.93211 1.12986 1.24977 0.91946 0.92400 0.93135 1.81203 1.12763 1.08456 1.09444 1.20345 0.92261 0.94969 0.90208 1.21126 1.00006 0.91792 1.05340 1.21444 0.91671 0.89724 1.10555 1.98370 1.74471 1.29126 1.96687 0.87520 0.89873 0.87996 0.93121 0.89990 0.93464 0.90085 0.92046 0.94967 0.93012 0.93295 0.94220 0.87676 0.90669 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.76 71.23 0.70 -0.90 16 2 C 0.19 3.93 6.78 42.58 0.29 4.22 16 3 N -0.52 -14.65 9.62 -180.43 -1.74 -16.38 16 4 C 0.36 11.27 5.29 133.62 0.71 11.98 16 5 N -0.51 -19.15 4.00 -701.10 -2.80 -21.95 16 6 C 0.08 2.63 5.26 86.33 0.45 3.08 16 7 C -0.11 -4.22 6.09 30.64 0.19 -4.03 16 8 C -0.10 -4.90 5.03 30.67 0.15 -4.74 16 9 C 0.05 2.84 2.26 -11.49 -0.03 2.81 16 10 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 11 C -0.53 -29.92 8.56 25.60 0.22 -29.71 16 12 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 13 C 0.02 0.90 5.31 84.65 0.45 1.35 16 14 N -0.91 -53.56 11.36 21.45 0.24 -53.32 16 15 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 C 0.10 4.18 4.48 86.33 0.39 4.57 16 20 C -0.07 -2.03 5.77 -21.05 -0.12 -2.16 16 21 C 0.29 9.34 13.45 88.33 1.19 10.53 16 22 N -0.44 -16.04 18.54 19.00 0.35 -15.69 16 23 C 0.03 0.67 5.95 -19.39 -0.12 0.55 16 24 C -0.13 -1.80 9.30 71.24 0.66 -1.14 16 25 C -0.10 -1.92 6.32 22.37 0.14 -1.77 16 26 Cl -0.02 -0.20 25.74 -2.72 -0.07 -0.27 16 27 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.10 1.07 6.85 -2.39 -0.02 1.06 16 30 H 0.05 1.72 8.02 -2.39 -0.02 1.70 16 31 H 0.08 2.45 8.10 -2.38 -0.02 2.43 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.06 3.33 6.16 -2.39 -0.01 3.32 16 35 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 37 H 0.05 2.19 8.10 -2.39 -0.02 2.17 16 38 H 0.04 1.74 8.02 -2.39 -0.02 1.72 16 39 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.07 1.18 7.19 -2.38 -0.02 1.16 16 41 H 0.11 1.09 7.02 -2.39 -0.02 1.07 16 Total: -1.00 -65.81 352.26 4.33 -61.47 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.05 Total: 5.42 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 5.27 Total: -5.37 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -3.94 Total: -107.34 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.07 Total: -0.27 kcal Total: -65.81 4.33 -61.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.614 kcal (2) G-P(sol) polarization free energy of solvation -65.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds