Wall clock time and date at job start Tue Mar 31 2020 14:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47312 * 2 1 4 4 O 1.42905 * 109.47089 * 119.99354 * 2 1 3 5 5 C 1.36015 * 116.99595 * 83.94313 * 4 2 1 6 6 C 1.38773 * 119.95625 * 354.63181 * 5 4 2 7 7 C 1.38336 * 120.32053 * 180.02562 * 6 5 4 8 8 C 1.38150 * 120.23232 * 0.02562 * 7 6 5 9 9 F 1.35108 * 120.04432 * 179.97438 * 8 7 6 10 10 C 1.39949 * 119.91164 * 359.97438 * 8 7 6 11 11 C 1.47678 * 120.15865 * 179.97438 * 10 8 7 12 12 N 1.32629 * 119.99663 * 305.05197 * 11 10 8 13 13 C 1.31736 * 121.70952 * 180.30772 * 12 11 10 14 14 C 1.38872 * 121.51317 * 359.43805 * 13 12 11 15 15 C 1.36888 * 119.81237 * 0.27185 * 14 13 12 16 16 C 1.41106 * 118.39959 * 0.02562 * 15 14 13 17 17 C 1.40858 * 120.72116 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00212 * 153.81154 * 17 16 15 19 19 C 1.40056 * 119.99801 * 333.80864 * 17 16 15 20 20 N 1.30786 * 119.99715 * 347.58954 * 19 17 16 21 21 Si 1.86796 * 119.99640 * 167.58681 * 19 17 16 22 22 H 1.48498 * 109.47376 * 60.00526 * 21 19 17 23 23 H 1.48500 * 109.46813 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47337 * 299.99855 * 21 19 17 25 25 C 1.38594 * 119.95376 * 174.89050 * 5 4 2 26 26 F 1.35096 * 120.11882 * 0.02562 * 25 5 4 27 27 H 1.09002 * 109.47260 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46876 * 300.00439 * 1 2 3 29 29 H 1.08998 * 109.46975 * 60.00025 * 1 2 3 30 30 H 1.08999 * 109.47135 * 239.99592 * 2 1 3 31 31 H 1.09000 * 109.47115 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46675 * 299.99674 * 3 2 1 33 33 H 1.08999 * 109.47354 * 59.99725 * 3 2 1 34 34 H 1.07998 * 119.84223 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.88007 * 179.97438 * 7 6 5 36 36 H 1.08000 * 119.24477 * 179.71262 * 13 12 11 37 37 H 1.07999 * 120.09693 * 180.29715 * 14 13 12 38 38 H 1.08003 * 120.79604 * 179.97438 * 15 14 13 39 39 H 0.97001 * 119.99538 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0915 -2.0296 1.1055 6 6 1.6199 -2.7037 -0.0121 7 6 1.7023 -4.0828 -0.0823 8 6 2.2548 -4.8006 0.9608 9 9 2.3330 -6.1475 0.8885 10 6 2.7335 -4.1307 2.0925 11 6 3.3246 -4.8926 3.2110 12 7 2.6346 -5.8680 3.7868 13 6 3.1266 -6.5651 4.7905 14 6 4.3994 -6.3205 5.2891 15 6 5.1681 -5.3314 4.7372 16 6 4.6330 -4.5842 3.6665 17 6 5.3816 -3.5556 3.0619 18 1 5.1903 -3.2802 2.0353 19 6 6.3741 -2.8898 3.7921 20 7 6.4468 -3.0448 5.0887 21 14 7.5940 -1.7806 2.9141 22 1 6.8621 -0.6879 2.2246 23 1 8.5354 -1.1987 3.9042 24 1 8.3546 -2.5740 1.9155 25 6 2.6444 -2.7368 2.1615 26 9 3.0985 -2.0816 3.2522 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.1856 -2.1490 -0.8307 35 1 1.3327 -4.6002 -0.9552 36 1 2.5281 -7.3477 5.2328 37 1 4.7819 -6.9092 6.1098 38 1 6.1599 -5.1274 5.1128 39 1 7.1345 -2.5840 5.5944 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204628622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:13 Heat of formation + Delta-G solvation = -96.511837 kcal Electronic energy + Delta-G solvation = -27133.363292 eV Core-core repulsion = 23062.193321 eV Total energy + Delta-G solvation = -4071.169971 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.72325 -49.60787 -41.13405 -40.27785 -38.25772 -36.05928 -34.13670 -33.43248 -32.51527 -30.55686 -30.09256 -28.14329 -27.54578 -25.16724 -23.82925 -23.26762 -22.93940 -21.48343 -19.47638 -19.26769 -18.64881 -18.29149 -17.65234 -17.04325 -16.91471 -16.52068 -16.31939 -16.08329 -15.86024 -15.74296 -15.54214 -15.32729 -14.67666 -14.37050 -14.22536 -13.90019 -13.70121 -13.63094 -13.40636 -13.27672 -13.26083 -12.97624 -12.86459 -12.78946 -12.53130 -12.40837 -12.20402 -11.75263 -11.69055 -11.52897 -11.28471 -10.40850 -10.03020 -9.95669 -9.32631 -9.03755 -8.74625 -6.50946 -0.12663 0.11843 0.74985 1.03020 1.30594 1.42271 1.47793 2.08229 2.11845 2.41733 2.67479 3.10886 3.46520 3.56080 3.63984 3.82704 3.86097 3.99796 4.09538 4.20248 4.24090 4.45527 4.60424 4.73726 4.76192 4.82493 4.85817 4.88023 4.91492 4.95591 5.00684 5.02231 5.14437 5.17712 5.25352 5.28169 5.33252 5.63416 5.76553 5.86916 5.95905 6.38847 6.40341 6.65191 6.71821 7.61238 8.15703 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011001 B = 0.006329 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.570262 B = 4422.762832 C = 6152.283321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.060 3.940 3 C -0.147 4.147 4 O -0.325 6.325 5 C 0.087 3.913 6 C -0.152 4.152 7 C -0.108 4.108 8 C 0.072 3.928 9 F -0.141 7.141 10 C -0.036 4.036 11 C -0.022 4.022 12 N -0.461 5.461 13 C -0.042 4.042 14 C -0.143 4.143 15 C -0.152 4.152 16 C 0.063 3.937 17 C -0.444 4.444 18 H 0.071 0.929 19 C 0.040 3.960 20 N -0.808 5.808 21 Si 0.975 3.025 22 H -0.262 1.262 23 H -0.258 1.258 24 H -0.253 1.253 25 C 0.081 3.919 26 F -0.135 7.135 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.110 0.890 33 H 0.058 0.942 34 H 0.190 0.810 35 H 0.182 0.818 36 H 0.155 0.845 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.542 7.248 -12.347 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.006 3.994 3 C -0.204 4.204 4 O -0.241 6.241 5 C 0.041 3.959 6 C -0.171 4.171 7 C -0.127 4.127 8 C 0.052 3.948 9 F -0.120 7.120 10 C -0.039 4.039 11 C -0.159 4.159 12 N -0.168 5.168 13 C -0.203 4.203 14 C -0.163 4.163 15 C -0.178 4.178 16 C 0.058 3.942 17 C -0.472 4.472 18 H 0.090 0.910 19 C -0.178 4.178 20 N -0.432 5.432 21 Si 0.795 3.205 22 H -0.186 1.186 23 H -0.182 1.182 24 H -0.177 1.177 25 C 0.060 3.940 26 F -0.113 7.113 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.077 0.923 34 H 0.207 0.793 35 H 0.200 0.800 36 H 0.172 0.828 37 H 0.153 0.847 38 H 0.142 0.858 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.171 7.261 -12.221 15.922 hybrid contribution 1.598 0.166 0.960 1.872 sum -5.573 7.427 -11.261 14.596 Atomic orbital electron populations 1.22411 0.93479 1.03472 1.04141 1.22943 0.95693 0.94244 0.86564 1.21904 1.01661 0.92729 1.04145 1.86222 1.81706 1.14592 1.41541 1.18846 0.98828 0.84141 0.94086 1.21302 1.03968 0.93909 0.97884 1.21185 0.99426 0.93918 0.98139 1.17719 1.04359 0.77319 0.95415 1.91439 1.94559 1.29591 1.96416 1.18399 1.00026 0.90946 0.94545 1.19363 0.92705 1.01282 1.02578 1.67055 1.36774 1.04682 1.08334 1.22250 0.96070 1.03638 0.98370 1.21781 0.95931 0.98262 1.00359 1.21562 1.00716 0.95962 0.99562 1.18628 0.90894 0.92412 0.92271 1.19519 1.14556 1.14124 0.98990 0.91049 1.26785 0.98194 0.97634 0.95154 1.69766 1.29935 1.35597 1.07912 0.85341 0.77532 0.78322 0.79353 1.18639 1.18193 1.17654 1.17077 1.03036 0.88527 0.85402 1.91484 1.86878 1.80502 1.52457 0.91824 0.92496 0.87817 0.88830 0.92708 0.87176 0.92267 0.79333 0.80023 0.82784 0.84717 0.85760 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 9.14 71.98 0.66 -2.16 16 2 C 0.06 1.23 2.85 30.59 0.09 1.31 16 3 C -0.15 -2.53 9.56 71.98 0.69 -1.84 16 4 O -0.33 -10.67 9.67 -93.73 -0.91 -11.58 16 5 C 0.09 3.12 6.59 22.48 0.15 3.26 16 6 C -0.15 -4.03 8.20 22.42 0.18 -3.85 16 7 C -0.11 -3.11 10.00 22.27 0.22 -2.89 16 8 C 0.07 2.94 7.27 22.66 0.16 3.10 16 9 F -0.14 -6.13 16.64 44.97 0.75 -5.38 16 10 C -0.04 -1.76 4.89 -19.98 -0.10 -1.86 16 11 C -0.02 -1.21 5.80 42.43 0.25 -0.97 16 12 N -0.46 -24.53 10.06 -182.97 -1.84 -26.37 16 13 C -0.04 -2.00 11.16 84.86 0.95 -1.05 16 14 C -0.14 -6.82 10.03 22.10 0.22 -6.60 16 15 C -0.15 -8.15 8.74 22.66 0.20 -7.95 16 16 C 0.06 3.53 5.36 -21.02 -0.11 3.42 16 17 C -0.44 -24.22 6.60 23.35 0.15 -24.07 16 18 H 0.07 3.88 6.81 -2.91 -0.02 3.86 16 19 C 0.04 2.01 5.26 85.29 0.45 2.46 16 20 N -0.81 -41.69 10.79 21.85 0.24 -41.46 16 21 Si 0.97 38.31 29.58 68.60 2.03 40.34 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 23 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 24 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 25 C 0.08 3.72 6.15 22.75 0.14 3.86 16 26 F -0.13 -7.17 14.92 44.97 0.67 -6.50 16 27 H 0.06 1.04 6.80 -2.39 -0.02 1.03 16 28 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.51 6.37 -2.39 -0.02 1.50 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.19 3.09 5.36 -2.91 -0.02 3.08 16 35 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.15 6.20 8.06 -2.91 -0.02 6.18 16 37 H 0.13 5.30 8.06 -2.91 -0.02 5.28 16 38 H 0.12 6.70 6.18 -2.91 -0.02 6.68 16 39 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 Total: -1.00 -70.97 335.25 6.34 -64.63 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 1.10 Total: 22.12 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 4.30 Total: -35.81 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -1.60 Total: -67.82 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.91 Total: -11.58 kcal Atomic # 9 Polarization: -13.30 SS G_CDS: 1.42 Total: -11.88 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -70.97 6.34 -64.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204628622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.878 kcal (2) G-P(sol) polarization free energy of solvation -70.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds