Wall clock time and date at job start Tue Mar 31 2020 14:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46998 * 2 1 4 4 O 1.42903 * 109.47039 * 119.99687 * 2 1 3 5 5 C 1.35875 * 116.99780 * 84.61849 * 4 2 1 6 6 C 1.38711 * 120.11602 * 273.74472 * 5 4 2 7 7 F 1.35095 * 120.00094 * 0.02562 * 6 5 4 8 8 C 1.38545 * 120.00360 * 180.02562 * 6 5 4 9 9 F 1.35100 * 119.87603 * 180.02562 * 8 6 5 10 10 C 1.38637 * 120.24366 * 359.97438 * 8 6 5 11 11 C 1.37921 * 120.23512 * 359.97438 * 10 8 6 12 12 C 1.39404 * 119.98894 * 359.76701 * 11 10 8 13 13 C 1.48232 * 120.12299 * 180.25526 * 12 11 10 14 14 C 1.38986 * 119.61839 * 0.05634 * 13 12 11 15 15 C 1.40803 * 118.75811 * 179.97438 * 14 13 12 16 16 C 1.41528 * 120.98663 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00161 * 329.38257 * 16 15 14 18 18 C 1.40047 * 120.00498 * 149.38538 * 16 15 14 19 19 N 1.30735 * 119.99893 * 162.61359 * 18 16 15 20 20 Si 1.86795 * 119.99643 * 342.61461 * 18 16 15 21 21 H 1.48500 * 109.47334 * 92.74969 * 20 18 16 22 22 H 1.48498 * 109.47011 * 212.74619 * 20 18 16 23 23 H 1.48500 * 109.47287 * 332.74731 * 20 18 16 24 24 C 1.41170 * 118.03562 * 0.02562 * 15 14 13 25 25 C 1.37705 * 119.08484 * 0.02562 * 24 15 14 26 26 N 1.31949 * 121.16796 * 359.71614 * 25 24 15 27 27 H 1.08999 * 109.47546 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47549 * 299.99997 * 1 2 3 29 29 H 1.09000 * 109.46954 * 59.99877 * 1 2 3 30 30 H 1.08998 * 109.47549 * 240.00003 * 2 1 3 31 31 H 1.09006 * 109.47276 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47369 * 299.99870 * 3 2 1 33 33 H 1.08998 * 109.47381 * 59.99992 * 3 2 1 34 34 H 1.07997 * 119.88212 * 180.02562 * 10 8 6 35 35 H 1.07998 * 120.00325 * 180.02562 * 11 10 8 36 36 H 1.08004 * 120.62218 * 359.97438 * 14 13 12 37 37 H 0.97006 * 119.99539 * 180.02562 * 19 18 16 38 38 H 1.07996 * 120.45887 * 179.97438 * 24 15 14 39 39 H 1.08003 * 119.41982 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1048 -2.0271 1.1006 6 6 1.0050 -2.8202 1.3932 7 9 -0.1668 -2.2470 1.7442 8 6 1.1083 -4.2001 1.3255 9 9 0.0353 -4.9700 1.6105 10 6 2.3082 -4.7937 0.9653 11 6 3.4078 -4.0147 0.6713 12 6 3.3133 -2.6252 0.7311 13 6 4.4916 -1.7850 0.4103 14 6 5.6892 -2.3906 0.0488 15 6 6.7967 -1.5752 -0.2528 16 6 8.0388 -2.1419 -0.6257 17 1 8.3309 -3.1063 -0.2368 18 6 8.8893 -1.4524 -1.4989 19 7 10.1505 -1.7861 -1.5824 20 14 8.2214 -0.0558 -2.5443 21 1 8.4132 1.2322 -1.8307 22 1 8.9465 -0.0167 -3.8397 23 1 6.7737 -0.2728 -2.7938 24 6 6.6320 -0.1755 -0.1711 25 6 5.4068 0.3339 0.1972 26 7 4.3897 -0.4619 0.4677 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 2.3821 -5.8700 0.9140 35 1 4.3406 -4.4811 0.3908 36 1 5.7688 -3.4666 0.0001 37 1 10.7397 -1.3082 -2.1870 38 1 7.4556 0.4866 -0.3936 39 1 5.2748 1.4039 0.2618 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205843319.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:57 Heat of formation + Delta-G solvation = -73.761537 kcal Electronic energy + Delta-G solvation = -26815.666368 eV Core-core repulsion = 22745.482925 eV Total energy + Delta-G solvation = -4070.183443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.38671 -48.45670 -39.95665 -38.33606 -37.32752 -34.17389 -32.91055 -31.86786 -31.45950 -29.65985 -28.29512 -27.02244 -26.07408 -23.69087 -23.14551 -21.52572 -21.21146 -20.65492 -18.36904 -17.91981 -17.42511 -16.79582 -16.43758 -16.07737 -15.89384 -15.15561 -15.03255 -14.63764 -14.51676 -14.34605 -14.26452 -14.06775 -13.54312 -13.36605 -13.10983 -12.99808 -12.61486 -12.43769 -12.08414 -12.04225 -11.78231 -11.60165 -11.47375 -11.18207 -11.04650 -10.88165 -10.74113 -10.55082 -9.98033 -9.65082 -9.51202 -9.07705 -8.67020 -8.37727 -8.18169 -7.56067 -7.16669 -4.83141 0.72318 0.98020 2.31698 2.49509 2.97178 3.07303 3.14806 3.34952 3.66348 3.79613 4.10062 4.39885 4.46117 4.66717 4.72686 4.98454 5.14721 5.23516 5.25001 5.35061 5.45903 5.64004 5.72502 5.77835 5.89927 5.91899 6.00004 6.03137 6.07574 6.15567 6.30919 6.34031 6.36995 6.53255 6.65280 6.66885 6.79614 6.95348 7.05503 7.50529 7.73384 7.80432 8.09005 8.29345 8.52880 9.17810 9.84613 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.017071 B = 0.004375 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.814663 B = 6399.010248 C = 7706.668916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.107 3.893 3 C -0.144 4.144 4 O -0.288 6.288 5 C 0.121 3.879 6 C 0.035 3.965 7 F -0.124 7.124 8 C 0.066 3.934 9 F -0.132 7.132 10 C -0.135 4.135 11 C -0.079 4.079 12 C -0.019 4.019 13 C 0.155 3.845 14 C -0.229 4.229 15 C 0.107 3.893 16 C -0.440 4.440 17 H 0.095 0.905 18 C 0.087 3.913 19 N -0.796 5.796 20 Si 0.914 3.086 21 H -0.266 1.266 22 H -0.288 1.288 23 H -0.247 1.247 24 C -0.280 4.280 25 C 0.116 3.884 26 N -0.533 5.533 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.113 0.887 37 H 0.289 0.711 38 H 0.110 0.890 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.621 -0.160 0.506 12.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.052 3.948 3 C -0.201 4.201 4 O -0.204 6.204 5 C 0.074 3.926 6 C 0.014 3.986 7 F -0.103 7.103 8 C 0.046 3.954 9 F -0.111 7.111 10 C -0.153 4.153 11 C -0.098 4.098 12 C -0.020 4.020 13 C 0.023 3.977 14 C -0.252 4.252 15 C 0.099 3.901 16 C -0.470 4.470 17 H 0.113 0.887 18 C -0.134 4.134 19 N -0.419 5.419 20 Si 0.740 3.260 21 H -0.192 1.192 22 H -0.215 1.215 23 H -0.171 1.171 24 C -0.302 4.302 25 C -0.039 4.039 26 N -0.247 5.247 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.203 0.336 0.828 13.233 hybrid contribution 0.343 0.029 -0.713 0.792 sum -12.860 0.365 0.115 12.866 Atomic orbital electron populations 1.22564 0.96734 1.02587 1.02334 1.22095 0.91694 0.94036 0.86997 1.21836 1.04166 0.93023 1.01052 1.86134 1.85262 1.12404 1.36558 1.18453 0.90150 0.85074 0.98936 1.18066 0.83071 0.89740 1.07680 1.91474 1.44529 1.84644 1.89652 1.17559 0.85500 0.86529 1.05814 1.91500 1.53712 1.74507 1.91370 1.20952 0.90646 1.01380 1.02360 1.21188 0.98945 0.91900 0.97769 1.19147 0.92636 0.92717 0.97529 1.18908 0.90456 0.90252 0.98070 1.21929 0.92729 0.99373 1.11124 1.17833 0.92428 0.91109 0.88679 1.19497 0.97955 1.05861 1.23672 0.88693 1.26177 0.93690 0.97077 0.96503 1.69636 1.04415 1.37491 1.30407 0.86272 0.81171 0.80408 0.78155 1.19182 1.21507 1.17071 1.22067 0.98985 0.96162 1.12980 1.21948 0.88951 0.98000 0.95011 1.67616 1.31823 1.03324 1.21975 0.92369 0.91789 0.91793 0.92385 0.89644 0.92130 0.92502 0.83498 0.83115 0.86884 0.90042 0.87253 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 8.77 37.16 0.33 -2.08 16 2 C 0.11 1.63 2.67 -26.73 -0.07 1.56 16 3 C -0.14 -1.99 9.44 37.16 0.35 -1.64 16 4 O -0.29 -5.12 7.76 -19.35 -0.15 -5.27 16 5 C 0.12 2.08 5.58 -38.82 -0.22 1.86 16 6 C 0.04 0.56 6.82 -39.29 -0.27 0.29 16 7 F -0.12 -2.00 14.64 2.25 0.03 -1.97 16 8 C 0.07 0.95 7.30 -39.32 -0.29 0.66 16 9 F -0.13 -1.87 17.17 2.25 0.04 -1.84 16 10 C -0.13 -1.68 10.01 -39.55 -0.40 -2.08 16 11 C -0.08 -1.12 9.41 -39.26 -0.37 -1.49 16 12 C -0.02 -0.32 5.89 -104.77 -0.62 -0.94 16 13 C 0.15 3.13 6.73 -83.05 -0.56 2.57 16 14 C -0.23 -4.82 9.25 -38.34 -0.35 -5.18 16 15 C 0.11 2.50 5.10 -106.56 -0.54 1.96 16 16 C -0.44 -10.92 9.63 -37.65 -0.36 -11.28 16 17 H 0.10 2.46 8.06 -52.48 -0.42 2.03 16 18 C 0.09 2.10 5.43 -17.34 -0.09 2.01 16 19 N -0.80 -19.71 13.92 55.55 0.77 -18.94 16 20 Si 0.91 19.23 24.57 -169.99 -4.18 15.06 16 21 H -0.27 -5.40 6.61 56.52 0.37 -5.02 16 22 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.25 -5.37 6.96 56.52 0.39 -4.98 16 24 C -0.28 -6.18 7.34 -38.66 -0.28 -6.46 16 25 C 0.12 2.34 10.36 -17.70 -0.18 2.16 16 26 N -0.53 -10.90 6.17 -9.96 -0.06 -10.96 16 27 H 0.06 0.80 5.92 -51.93 -0.31 0.49 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.94 7.97 -51.93 -0.41 0.53 16 31 H 0.08 1.32 5.39 -51.93 -0.28 1.05 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.15 1.91 6.17 -52.49 -0.32 1.59 16 36 H 0.11 2.13 6.18 -52.48 -0.32 1.81 16 37 H 0.29 6.46 8.29 -40.82 -0.34 6.12 16 38 H 0.11 2.39 4.82 -52.49 -0.25 2.14 16 39 H 0.13 2.20 7.58 -52.48 -0.40 1.81 16 LS Contribution 325.62 15.07 4.91 4.91 Total: -1.00 -26.20 325.62 -6.57 -32.77 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.01 Total: 4.32 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -3.93 Total: -18.08 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 0.71 Total: -29.89 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.15 Total: -5.27 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.07 Total: -3.80 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.18 Total: 15.06 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.20 -6.57 -32.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205843319.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.994 kcal (2) G-P(sol) polarization free energy of solvation -26.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds