Wall clock time and date at job start Tue Mar 31 2020 14:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46998 * 2 1 4 4 O 1.42903 * 109.47039 * 119.99687 * 2 1 3 5 5 C 1.35875 * 116.99780 * 84.61849 * 4 2 1 6 6 C 1.38711 * 120.11602 * 273.74472 * 5 4 2 7 7 F 1.35095 * 120.00094 * 0.02562 * 6 5 4 8 8 C 1.38545 * 120.00360 * 180.02562 * 6 5 4 9 9 F 1.35100 * 119.87603 * 180.02562 * 8 6 5 10 10 C 1.38637 * 120.24366 * 359.97438 * 8 6 5 11 11 C 1.37921 * 120.23512 * 359.97438 * 10 8 6 12 12 C 1.39404 * 119.98894 * 359.76701 * 11 10 8 13 13 C 1.48232 * 120.12299 * 180.25526 * 12 11 10 14 14 C 1.38986 * 119.61839 * 0.05634 * 13 12 11 15 15 C 1.40803 * 118.75811 * 179.97438 * 14 13 12 16 16 C 1.41528 * 120.98663 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00161 * 329.38257 * 16 15 14 18 18 C 1.40047 * 120.00498 * 149.38538 * 16 15 14 19 19 N 1.30735 * 119.99893 * 162.61359 * 18 16 15 20 20 Si 1.86795 * 119.99643 * 342.61461 * 18 16 15 21 21 H 1.48500 * 109.47334 * 92.74969 * 20 18 16 22 22 H 1.48498 * 109.47011 * 212.74619 * 20 18 16 23 23 H 1.48500 * 109.47287 * 332.74731 * 20 18 16 24 24 C 1.41170 * 118.03562 * 0.02562 * 15 14 13 25 25 C 1.37705 * 119.08484 * 0.02562 * 24 15 14 26 26 N 1.31949 * 121.16796 * 359.71614 * 25 24 15 27 27 H 1.08999 * 109.47546 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47549 * 299.99997 * 1 2 3 29 29 H 1.09000 * 109.46954 * 59.99877 * 1 2 3 30 30 H 1.08998 * 109.47549 * 240.00003 * 2 1 3 31 31 H 1.09006 * 109.47276 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47369 * 299.99870 * 3 2 1 33 33 H 1.08998 * 109.47381 * 59.99992 * 3 2 1 34 34 H 1.07997 * 119.88212 * 180.02562 * 10 8 6 35 35 H 1.07998 * 120.00325 * 180.02562 * 11 10 8 36 36 H 1.08004 * 120.62218 * 359.97438 * 14 13 12 37 37 H 0.97006 * 119.99539 * 180.02562 * 19 18 16 38 38 H 1.07996 * 120.45887 * 179.97438 * 24 15 14 39 39 H 1.08003 * 119.41982 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1048 -2.0271 1.1006 6 6 1.0050 -2.8202 1.3932 7 9 -0.1668 -2.2470 1.7442 8 6 1.1083 -4.2001 1.3255 9 9 0.0353 -4.9700 1.6105 10 6 2.3082 -4.7937 0.9653 11 6 3.4078 -4.0147 0.6713 12 6 3.3133 -2.6252 0.7311 13 6 4.4916 -1.7850 0.4103 14 6 5.6892 -2.3906 0.0488 15 6 6.7967 -1.5752 -0.2528 16 6 8.0388 -2.1419 -0.6257 17 1 8.3309 -3.1063 -0.2368 18 6 8.8893 -1.4524 -1.4989 19 7 10.1505 -1.7861 -1.5824 20 14 8.2214 -0.0558 -2.5443 21 1 8.4132 1.2322 -1.8307 22 1 8.9465 -0.0167 -3.8397 23 1 6.7737 -0.2728 -2.7938 24 6 6.6320 -0.1755 -0.1711 25 6 5.4068 0.3339 0.1972 26 7 4.3897 -0.4619 0.4677 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 2.3821 -5.8700 0.9140 35 1 4.3406 -4.4811 0.3908 36 1 5.7688 -3.4666 0.0001 37 1 10.7397 -1.3082 -2.1870 38 1 7.4556 0.4866 -0.3936 39 1 5.2748 1.4039 0.2618 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205843319.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:56 Heat of formation + Delta-G solvation = -85.946862 kcal Electronic energy + Delta-G solvation = -26816.194764 eV Core-core repulsion = 22745.482925 eV Total energy + Delta-G solvation = -4070.711839 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.57096 -49.64459 -41.30040 -39.87422 -38.53752 -35.92971 -34.06599 -33.39111 -33.09223 -30.86011 -29.71590 -28.11739 -27.79701 -25.09359 -24.40597 -23.00467 -22.63047 -21.99336 -19.78090 -19.33085 -18.66580 -18.18442 -17.67764 -17.61723 -17.18978 -16.50556 -16.33837 -16.17514 -15.98990 -15.65784 -15.49633 -15.33033 -14.98025 -14.80917 -14.59087 -14.42481 -13.83807 -13.65117 -13.41727 -13.29233 -13.07254 -12.89186 -12.77713 -12.73265 -12.61239 -12.33364 -12.19401 -11.75642 -11.67718 -11.23848 -10.88248 -10.45794 -10.11867 -9.85058 -9.81274 -9.04508 -8.96076 -6.68580 -0.56869 -0.18829 0.72424 0.85065 1.27429 1.40913 1.47460 2.07128 2.11812 2.44461 2.68823 2.91660 3.22471 3.32061 3.54629 3.57300 3.82693 4.02976 4.11815 4.18937 4.24653 4.30897 4.52257 4.56350 4.61775 4.70992 4.72543 4.74435 4.86603 4.95998 4.97808 5.02827 5.08830 5.14206 5.26699 5.28384 5.42955 5.50623 5.54440 5.75174 6.05114 6.25705 6.52396 6.55849 6.70386 7.53445 8.10651 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.017071 B = 0.004375 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.814663 B = 6399.010248 C = 7706.668916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.101 3.899 3 C -0.140 4.140 4 O -0.309 6.309 5 C 0.113 3.887 6 C 0.023 3.977 7 F -0.128 7.128 8 C 0.076 3.924 9 F -0.128 7.128 10 C -0.115 4.115 11 C -0.068 4.068 12 C -0.048 4.048 13 C 0.156 3.844 14 C -0.240 4.240 15 C 0.094 3.906 16 C -0.473 4.473 17 H 0.067 0.933 18 C 0.056 3.944 19 N -0.835 5.835 20 Si 0.963 3.037 21 H -0.253 1.253 22 H -0.277 1.277 23 H -0.259 1.259 24 C -0.293 4.293 25 C 0.116 3.884 26 N -0.528 5.528 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.188 0.812 35 H 0.167 0.833 36 H 0.129 0.871 37 H 0.297 0.703 38 H 0.111 0.889 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.764 -0.047 0.314 14.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.047 3.953 3 C -0.197 4.197 4 O -0.225 6.225 5 C 0.066 3.934 6 C 0.002 3.998 7 F -0.107 7.107 8 C 0.055 3.945 9 F -0.107 7.107 10 C -0.133 4.133 11 C -0.086 4.086 12 C -0.050 4.050 13 C 0.024 3.976 14 C -0.262 4.262 15 C 0.087 3.913 16 C -0.504 4.504 17 H 0.085 0.915 18 C -0.162 4.162 19 N -0.461 5.461 20 Si 0.787 3.213 21 H -0.178 1.178 22 H -0.203 1.203 23 H -0.183 1.183 24 C -0.315 4.315 25 C -0.039 4.039 26 N -0.242 5.242 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.205 0.795 35 H 0.184 0.816 36 H 0.147 0.853 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.343 0.444 0.643 15.363 hybrid contribution 0.769 -0.080 -0.537 0.942 sum -14.574 0.364 0.106 14.579 Atomic orbital electron populations 1.22481 0.95020 1.02354 1.03491 1.22270 0.93071 0.94296 0.85699 1.21831 1.02975 0.92440 1.02488 1.86092 1.85718 1.12933 1.37774 1.18541 0.90523 0.85088 0.99232 1.18121 0.82757 0.90382 1.08510 1.91460 1.44587 1.84869 1.89790 1.17705 0.86065 0.85936 1.04762 1.91518 1.53727 1.74238 1.91217 1.21292 0.88915 1.03126 0.99957 1.21394 1.00132 0.90692 0.96431 1.19154 0.91869 0.93792 1.00179 1.19329 0.91195 0.90493 0.96595 1.22135 0.92571 1.00283 1.11241 1.18011 0.92448 0.92140 0.88741 1.19465 0.99593 1.05529 1.25807 0.91454 1.26770 0.93674 0.98817 0.96924 1.69659 1.05298 1.39239 1.31882 0.85523 0.79784 0.78650 0.77376 1.17756 1.20313 1.18286 1.22196 0.99890 0.95743 1.13649 1.22433 0.88135 0.99596 0.93728 1.67770 1.31698 1.03645 1.21043 0.93271 0.91690 0.89507 0.93875 0.91407 0.89731 0.92026 0.79474 0.81609 0.85294 0.89226 0.87179 0.82308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.27 8.77 71.98 0.63 -3.63 16 2 C 0.10 2.96 2.67 30.59 0.08 3.04 16 3 C -0.14 -3.62 9.44 71.98 0.68 -2.94 16 4 O -0.31 -10.70 7.76 -92.15 -0.71 -11.42 16 5 C 0.11 3.75 5.58 22.76 0.13 3.88 16 6 C 0.02 0.69 6.82 22.46 0.15 0.84 16 7 F -0.13 -3.95 14.64 44.97 0.66 -3.30 16 8 C 0.08 1.95 7.30 22.44 0.16 2.11 16 9 F -0.13 -3.24 17.17 44.97 0.77 -2.47 16 10 C -0.11 -2.44 10.01 22.29 0.22 -2.22 16 11 C -0.07 -1.75 9.41 22.48 0.21 -1.54 16 12 C -0.05 -1.62 5.89 -19.96 -0.12 -1.73 16 13 C 0.16 6.19 6.73 41.83 0.28 6.47 16 14 C -0.24 -10.10 9.25 23.08 0.21 -9.89 16 15 C 0.09 4.46 5.10 -21.12 -0.11 4.35 16 16 C -0.47 -24.39 9.63 23.52 0.23 -24.17 16 17 H 0.07 3.70 8.06 -2.91 -0.02 3.68 16 18 C 0.06 2.75 5.43 85.29 0.46 3.22 16 19 N -0.84 -42.60 13.92 21.84 0.30 -42.30 16 20 Si 0.96 39.61 24.57 68.60 1.69 41.30 16 21 H -0.25 -9.73 6.61 99.48 0.66 -9.08 16 22 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.26 -11.01 6.96 99.48 0.69 -10.31 16 24 C -0.29 -12.83 7.34 22.86 0.17 -12.67 16 25 C 0.12 4.58 10.36 84.55 0.88 5.45 16 26 N -0.53 -21.07 6.17 -185.41 -1.14 -22.21 16 27 H 0.05 1.27 5.92 -2.39 -0.01 1.26 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.36 7.97 -2.39 -0.02 1.34 16 31 H 0.07 1.99 5.39 -2.38 -0.01 1.97 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.19 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.17 3.77 6.17 -2.91 -0.02 3.75 16 36 H 0.13 4.84 6.18 -2.91 -0.02 4.82 16 37 H 0.30 13.57 8.29 -92.70 -0.77 12.80 16 38 H 0.11 4.75 4.82 -2.91 -0.01 4.73 16 39 H 0.16 5.14 7.58 -2.91 -0.02 5.12 16 Total: -1.00 -57.76 325.62 6.88 -50.88 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 1.04 Total: 18.93 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 4.27 Total: -29.42 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.84 Total: -64.51 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.71 Total: -11.42 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 1.43 Total: -5.77 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 1.69 Total: 41.30 kcal Total: -57.76 6.88 -50.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205843319.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.064 kcal (2) G-P(sol) polarization free energy of solvation -57.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds