Wall clock time and date at job start Tue Mar 31 2020 14:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47109 * 2 1 4 4 O 1.42899 * 109.46902 * 240.00436 * 2 1 3 5 5 C 1.35963 * 117.00173 * 274.17737 * 4 2 1 6 6 C 1.38441 * 119.99992 * 5.38584 * 5 4 2 7 7 C 1.39301 * 119.84470 * 179.77162 * 6 5 4 8 8 C 1.48380 * 120.06983 * 180.25434 * 7 6 5 9 9 C 1.39005 * 120.41483 * 129.96098 * 8 7 6 10 10 C 1.40960 * 118.12638 * 179.74264 * 9 8 7 11 11 C 1.41374 * 120.57230 * 180.25777 * 10 9 8 12 12 H 1.08003 * 120.00133 * 156.11797 * 11 10 9 13 13 C 1.39898 * 120.00181 * 336.11109 * 11 10 9 14 14 N 1.30863 * 120.00043 * 343.95265 * 13 11 10 15 15 Si 1.86799 * 120.00089 * 163.95621 * 13 11 10 16 16 H 1.48493 * 109.47304 * 89.99867 * 15 13 11 17 17 H 1.48499 * 109.46901 * 210.00436 * 15 13 11 18 18 H 1.48503 * 109.46817 * 329.99937 * 15 13 11 19 19 C 1.40803 * 118.85057 * 0.52245 * 10 9 8 20 20 N 1.31499 * 120.69985 * 359.73264 * 19 10 9 21 21 C 1.32162 * 122.07740 * 0.02562 * 20 19 10 22 22 F 1.35096 * 119.45934 * 179.97438 * 21 20 19 23 23 C 1.39364 * 119.85113 * 0.48541 * 7 6 5 24 24 C 1.38031 * 120.00361 * 359.77223 * 23 7 6 25 25 C 1.38423 * 120.15355 * 359.97438 * 24 23 7 26 26 F 1.35096 * 119.92392 * 180.02562 * 25 24 23 27 27 H 1.08995 * 109.46763 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47117 * 59.99900 * 1 2 3 29 29 H 1.08992 * 109.46834 * 299.99547 * 1 2 3 30 30 H 1.08997 * 109.47598 * 120.00325 * 2 1 3 31 31 H 1.09000 * 109.46701 * 60.00209 * 3 2 1 32 32 H 1.08992 * 109.47388 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47156 * 300.00596 * 3 2 1 34 34 H 1.08004 * 120.07714 * 0.03022 * 6 5 4 35 35 H 1.07995 * 120.94234 * 359.97438 * 9 8 7 36 36 H 0.96999 * 120.00281 * 179.97438 * 14 13 11 37 37 H 1.08007 * 119.64678 * 179.75549 * 19 10 9 38 38 H 1.07997 * 119.99596 * 179.78739 * 23 7 6 39 39 H 1.07995 * 119.92233 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1289 -2.0256 -1.0923 6 6 1.6938 -2.6989 0.0363 7 6 1.8165 -4.0847 0.1073 8 6 1.3466 -4.8120 1.3122 9 6 0.5121 -5.9166 1.1866 10 6 0.0993 -6.5746 2.3629 11 6 -0.7450 -7.7066 2.2950 12 1 -0.7530 -8.4235 3.1027 13 6 -1.5702 -7.8980 1.1817 14 7 -1.8041 -6.9050 0.3621 15 14 -2.3381 -9.5712 0.8649 16 1 -3.6564 -9.6473 1.5441 17 1 -2.5221 -9.7627 -0.5961 18 1 -1.4460 -10.6335 1.3949 19 6 0.5377 -6.0817 3.6068 20 7 1.3231 -5.0290 3.6727 21 6 1.7334 -4.3906 2.5907 22 9 2.5394 -3.3141 2.7200 23 6 2.3860 -4.7859 -0.9540 24 6 2.8226 -4.1077 -2.0741 25 6 2.6960 -2.7312 -2.1470 26 9 3.1244 -2.0722 -3.2458 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5137 0.8900 30 1 1.8935 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.2563 -2.1515 0.8582 35 1 0.1921 -6.2632 0.2152 36 1 -2.3760 -7.0378 -0.4100 37 1 0.2260 -6.5736 4.5164 38 1 2.4855 -5.8599 -0.9001 39 1 3.2641 -4.6523 -2.8956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206191966.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:39 Heat of formation + Delta-G solvation = -87.826086 kcal Electronic energy + Delta-G solvation = -26356.206298 eV Core-core repulsion = 22285.412970 eV Total energy + Delta-G solvation = -4070.793328 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.52162 -47.68282 -40.03523 -38.56421 -37.30628 -34.28728 -33.33536 -32.08514 -30.52028 -29.89993 -28.11509 -27.31777 -25.63652 -23.55933 -23.17375 -21.86131 -20.86472 -20.69785 -18.30442 -17.43434 -16.83647 -16.73813 -16.48678 -15.85887 -15.72471 -15.26822 -14.94817 -14.74514 -14.61447 -14.30892 -14.14083 -13.48799 -13.19583 -12.94052 -12.75466 -12.60549 -12.41090 -12.38138 -12.23113 -12.15126 -11.86954 -11.71052 -11.64074 -11.40474 -11.30265 -11.05481 -10.84601 -10.74980 -10.61836 -10.20542 -9.58306 -8.98629 -8.54403 -8.31654 -7.97645 -7.52844 -7.10135 -4.72499 1.23181 1.52696 2.28489 2.58904 2.90594 2.91725 2.98038 3.16619 3.67912 3.85867 4.28003 4.47010 4.72865 4.84770 4.92630 5.01081 5.06923 5.11206 5.23536 5.40509 5.45926 5.47152 5.58478 5.66023 5.72974 5.85204 5.95965 5.99393 6.14337 6.23496 6.25042 6.38877 6.43255 6.54560 6.79688 6.81531 6.87947 6.94108 7.33713 7.49862 7.53097 7.65674 8.11043 8.36871 8.39050 9.11555 9.80827 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014046 B = 0.004083 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.967652 B = 6856.827578 C = 7610.981343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 C -0.146 4.146 4 O -0.306 6.306 5 C 0.099 3.901 6 C -0.166 4.166 7 C 0.020 3.980 8 C -0.106 4.106 9 C -0.094 4.094 10 C 0.054 3.946 11 C -0.437 4.437 12 H 0.089 0.911 13 C 0.072 3.928 14 N -0.783 5.783 15 Si 0.916 3.084 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.257 1.257 19 C 0.012 3.988 20 N -0.488 5.488 21 C 0.163 3.837 22 F -0.146 7.146 23 C -0.116 4.116 24 C -0.116 4.116 25 C 0.052 3.948 26 F -0.140 7.140 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.288 0.712 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.839 6.451 -4.416 8.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.017 3.983 3 C -0.203 4.203 4 O -0.221 6.221 5 C 0.053 3.947 6 C -0.185 4.185 7 C 0.018 3.982 8 C -0.110 4.110 9 C -0.119 4.119 10 C 0.049 3.951 11 C -0.466 4.466 12 H 0.107 0.893 13 C -0.148 4.148 14 N -0.407 5.407 15 Si 0.739 3.261 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.181 1.181 19 C -0.149 4.149 20 N -0.199 5.199 21 C 0.009 3.991 22 F -0.126 7.126 23 C -0.134 4.134 24 C -0.135 4.135 25 C 0.032 3.968 26 F -0.119 7.119 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.099 0.901 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.058 7.046 -4.033 8.675 hybrid contribution -0.667 -0.708 -0.920 1.339 sum 2.390 6.338 -4.953 8.392 Atomic orbital electron populations 1.22378 0.94880 1.03598 1.02928 1.22503 0.94565 0.93604 0.87612 1.21835 1.02055 0.93516 1.02887 1.86128 1.81506 1.15703 1.38743 1.18783 0.98283 0.83339 0.94259 1.21253 1.04939 0.94650 0.97675 1.18616 0.94430 0.91784 0.93321 1.19093 1.02589 0.99208 0.90128 1.21784 0.95741 0.94003 1.00344 1.18495 0.92087 0.93142 0.91350 1.19587 1.17576 1.05810 1.03625 0.89293 1.26033 0.95356 0.98657 0.94719 1.69754 1.27847 1.31538 1.11552 0.86160 0.79886 0.81426 0.78595 1.19123 1.19783 1.18096 1.22326 1.01246 0.94399 0.96979 1.66283 1.12197 1.09393 1.32063 1.17488 1.01766 0.90852 0.89016 1.91397 1.71589 1.52835 1.96737 1.21026 0.99642 1.00457 0.92322 1.20848 1.01799 0.91140 0.99693 1.16938 1.05662 0.89912 0.84300 1.91446 1.88112 1.81167 1.51162 0.91450 0.91553 0.90909 0.90325 0.90477 0.91697 0.91598 0.84338 0.83973 0.90055 0.84319 0.84667 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.20 37.16 0.34 -1.87 16 2 C 0.07 0.96 2.84 -26.73 -0.08 0.89 16 3 C -0.15 -1.49 9.56 37.16 0.36 -1.14 16 4 O -0.31 -4.93 9.66 -19.62 -0.19 -5.12 16 5 C 0.10 1.71 6.61 -39.23 -0.26 1.45 16 6 C -0.17 -3.03 7.10 -39.11 -0.28 -3.30 16 7 C 0.02 0.38 5.33 -104.91 -0.56 -0.18 16 8 C -0.11 -2.36 5.48 -104.75 -0.57 -2.94 16 9 C -0.09 -2.18 8.29 -38.27 -0.32 -2.49 16 10 C 0.05 1.29 5.59 -106.70 -0.60 0.69 16 11 C -0.44 -10.09 9.08 -37.77 -0.34 -10.43 16 12 H 0.09 1.92 7.90 -52.48 -0.41 1.51 16 13 C 0.07 1.59 5.20 -17.34 -0.09 1.50 16 14 N -0.78 -17.90 10.85 55.54 0.60 -17.30 16 15 Si 0.92 16.44 29.59 -169.99 -5.03 11.41 16 16 H -0.27 -4.77 7.11 56.52 0.40 -4.36 16 17 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 18 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 19 C 0.01 0.28 10.96 -16.72 -0.18 0.09 16 20 N -0.49 -11.72 10.33 -12.58 -0.13 -11.85 16 21 C 0.16 3.80 8.30 -16.72 -0.14 3.66 16 22 F -0.15 -3.25 15.88 2.25 0.04 -3.21 16 23 C -0.12 -1.99 9.53 -39.24 -0.37 -2.36 16 24 C -0.12 -1.79 10.01 -39.59 -0.40 -2.18 16 25 C 0.05 0.87 7.31 -39.23 -0.29 0.58 16 26 F -0.14 -2.35 17.10 2.25 0.04 -2.31 16 27 H 0.07 0.95 7.01 -51.93 -0.36 0.58 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.08 6.25 -51.93 -0.32 0.76 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.14 2.48 5.17 -52.48 -0.27 2.21 16 35 H 0.14 3.34 6.15 -52.49 -0.32 3.01 16 36 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 37 H 0.14 2.89 8.06 -52.48 -0.42 2.46 16 38 H 0.14 2.15 8.05 -52.49 -0.42 1.73 16 39 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 340.76 15.07 5.14 5.14 Total: -1.00 -26.18 340.76 -7.53 -33.70 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.21 Total: 7.58 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -3.78 Total: -18.02 kcal Atomic # 7 Polarization: -29.63 SS G_CDS: 0.47 Total: -29.15 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.19 Total: -5.12 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.07 Total: -5.52 kcal Atomic # 14 Polarization: 16.44 SS G_CDS: -5.03 Total: 11.41 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -26.18 -7.53 -33.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206191966.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.125 kcal (2) G-P(sol) polarization free energy of solvation -26.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds