Wall clock time and date at job start Tue Mar 31 2020 14:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46784 * 2 1 4 4 O 1.42894 * 109.47234 * 119.99958 * 2 1 3 5 5 C 1.35742 * 116.99877 * 89.99979 * 4 2 1 6 6 C 1.38656 * 119.59921 * 179.97438 * 5 4 2 7 7 C 1.39535 * 118.99424 * 179.74494 * 6 5 4 8 8 C 1.48342 * 120.88339 * 180.29407 * 7 6 5 9 9 C 1.39615 * 120.01748 * 65.24888 * 8 7 6 10 10 C 1.38452 * 120.42116 * 179.97438 * 9 8 7 11 11 C 1.37669 * 120.45714 * 359.95686 * 10 9 8 12 12 C 1.40742 * 120.02604 * 0.02562 * 11 10 9 13 13 C 1.41307 * 120.21035 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00627 * 204.64398 * 13 12 11 15 15 C 1.39932 * 120.00142 * 24.64108 * 13 12 11 16 16 N 1.30853 * 119.99908 * 17.80672 * 15 13 12 17 17 Si 1.86803 * 120.00496 * 197.80393 * 15 13 12 18 18 H 1.48501 * 109.46945 * 90.00023 * 17 15 13 19 19 H 1.48499 * 109.47279 * 210.00125 * 17 15 13 20 20 H 1.48497 * 109.46752 * 330.00158 * 17 15 13 21 21 C 1.39089 * 120.01914 * 244.97061 * 8 7 6 22 22 F 1.35092 * 120.22596 * 0.02562 * 21 8 7 23 23 C 1.40092 * 118.23415 * 0.53807 * 7 6 5 24 24 F 1.35095 * 120.45429 * 179.73705 * 23 7 6 25 25 C 1.38028 * 119.09406 * 359.46019 * 23 7 6 26 26 N 1.32039 * 120.92466 * 0.28061 * 25 23 7 27 27 H 1.09004 * 109.46869 * 300.00145 * 1 2 3 28 28 H 1.08992 * 109.47506 * 59.99555 * 1 2 3 29 29 H 1.08994 * 109.47377 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46826 * 240.00285 * 2 1 3 31 31 H 1.09002 * 109.46522 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47300 * 299.99540 * 3 2 1 33 33 H 1.08998 * 109.47206 * 60.00518 * 3 2 1 34 34 H 1.08007 * 120.50526 * 0.04343 * 6 5 4 35 35 H 1.08000 * 119.79409 * 359.97438 * 9 8 7 36 36 H 1.07997 * 119.77484 * 179.97438 * 10 9 8 37 37 H 1.07996 * 119.99029 * 180.02562 * 11 10 9 38 38 H 0.96993 * 120.00303 * 180.02562 * 16 15 13 39 39 H 1.08004 * 119.53973 * 180.29999 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2118 -2.0115 1.0651 6 6 2.6740 -2.7189 2.1645 7 6 2.8757 -4.0946 2.0476 8 6 3.3628 -4.8933 3.1988 9 6 2.5699 -5.0295 4.3398 10 6 3.0161 -5.7735 5.4189 11 6 4.2468 -6.3893 5.3808 12 6 5.0615 -6.2649 4.2400 13 6 6.3257 -6.8949 4.1969 14 1 7.0998 -6.5088 3.5504 15 6 6.5746 -8.0191 4.9921 16 7 5.5760 -8.6954 5.4999 17 14 8.3323 -8.5547 5.3286 18 1 8.8274 -7.8840 6.5575 19 1 8.3736 -10.0271 5.5173 20 1 9.1930 -8.1787 4.1784 21 6 4.6073 -5.5117 3.1398 22 9 5.3768 -5.3876 2.0364 23 6 2.6108 -4.7007 0.8126 24 9 2.7957 -6.0288 0.6480 25 6 2.1529 -3.9233 -0.2320 26 7 1.9690 -2.6245 -0.0815 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.8704 -2.2135 3.0986 35 1 1.6023 -4.5516 4.3811 36 1 2.3943 -5.8716 6.2964 37 1 4.5871 -6.9681 6.2266 38 1 5.7485 -9.4744 6.0514 39 1 1.9418 -4.3840 -1.1858 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206630889.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:17 Heat of formation + Delta-G solvation = -98.597895 kcal Electronic energy + Delta-G solvation = -26036.236520 eV Core-core repulsion = 21964.976092 eV Total energy + Delta-G solvation = -4071.260429 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.93015 -49.28214 -41.73969 -39.60343 -38.87120 -35.98578 -34.26956 -34.13418 -31.64962 -30.91865 -30.29706 -28.13166 -27.34840 -25.56598 -24.40666 -23.10678 -22.65677 -21.79611 -19.80321 -18.86928 -18.56973 -18.34355 -17.97068 -17.32831 -16.97821 -16.45726 -16.34588 -16.15796 -16.02300 -15.88299 -15.39771 -14.97863 -14.74128 -14.57827 -14.48583 -14.00943 -13.89780 -13.74417 -13.48496 -13.31100 -13.19639 -13.13508 -12.81240 -12.80102 -12.55265 -12.23157 -11.96574 -11.82081 -11.73236 -11.60788 -11.19963 -10.87296 -10.81045 -9.55671 -9.45893 -9.27896 -8.76131 -6.48366 -0.24943 -0.11511 0.71208 0.75759 1.35798 1.45979 1.49271 1.89452 2.16721 2.43825 2.56861 3.04254 3.08264 3.38264 3.50256 3.71058 3.87321 3.94563 4.05106 4.07758 4.29756 4.36609 4.41429 4.56379 4.67481 4.72999 4.84538 4.85913 4.87502 4.89849 4.92656 5.09037 5.18418 5.21956 5.29359 5.32619 5.49240 5.60124 5.90915 5.92832 6.07254 6.15247 6.47251 6.54933 6.70544 6.78263 8.20709 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023629 B = 0.003159 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.720011 B = 8860.967743 C = 8940.997222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.070 3.930 3 C -0.146 4.146 4 O -0.305 6.305 5 C 0.318 3.682 6 C -0.157 4.157 7 C 0.009 3.991 8 C -0.075 4.075 9 C -0.186 4.186 10 C -0.104 4.104 11 C -0.156 4.156 12 C 0.058 3.942 13 C -0.493 4.493 14 H 0.069 0.931 15 C 0.041 3.959 16 N -0.813 5.813 17 Si 0.985 3.015 18 H -0.255 1.255 19 H -0.261 1.261 20 H -0.265 1.265 21 C -0.033 4.033 22 F -0.167 7.167 23 C -0.001 4.001 24 F -0.138 7.138 25 C 0.128 3.872 26 N -0.516 5.516 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.158 0.842 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.120 0.880 38 H 0.295 0.705 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.065 12.753 -6.987 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.014 3.986 3 C -0.203 4.203 4 O -0.213 6.213 5 C 0.139 3.861 6 C -0.177 4.177 7 C 0.001 3.999 8 C -0.076 4.076 9 C -0.206 4.206 10 C -0.123 4.123 11 C -0.176 4.176 12 C 0.055 3.945 13 C -0.522 4.522 14 H 0.087 0.913 15 C -0.176 4.176 16 N -0.438 5.438 17 Si 0.805 3.195 18 H -0.179 1.179 19 H -0.186 1.186 20 H -0.189 1.189 21 C -0.053 4.053 22 F -0.146 7.146 23 C -0.023 4.023 24 F -0.117 7.117 25 C -0.028 4.028 26 N -0.240 5.240 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.175 0.825 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.137 0.863 38 H 0.106 0.894 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.374 13.204 -7.382 17.291 hybrid contribution 1.267 -1.427 0.504 1.973 sum -7.107 11.778 -6.878 15.380 Atomic orbital electron populations 1.22192 0.93762 1.02307 1.03810 1.22690 0.95395 0.93685 0.86824 1.21927 1.01753 0.92358 1.04273 1.86322 1.80195 1.14710 1.40086 1.19631 0.91831 0.85388 0.89260 1.21069 1.04993 0.91229 1.00417 1.19170 0.94949 0.93393 0.92379 1.18272 0.93792 1.00585 0.94960 1.20597 1.00446 1.06388 0.93121 1.21015 0.95866 0.96911 0.98464 1.21316 0.95636 1.02985 0.97621 1.17895 0.94702 0.91494 0.90393 1.19669 0.98093 1.11352 1.23081 0.91285 1.26713 1.03783 0.94523 0.92554 1.69816 1.35009 1.14352 1.24576 0.85155 0.76258 0.78277 0.79791 1.17900 1.18561 1.18939 1.18087 0.91552 1.10792 0.84863 1.91239 1.75702 1.95370 1.52259 1.18966 1.07936 0.79330 0.96025 1.91490 1.93400 1.30996 1.95831 1.22757 0.94066 0.87497 0.98510 1.67335 1.21714 1.10863 1.24073 0.91689 0.88814 0.93508 0.89840 0.92343 0.88063 0.91293 0.82474 0.84917 0.84730 0.86259 0.89397 0.77875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.53 71.98 0.69 -2.03 16 2 C 0.07 1.38 3.11 30.60 0.10 1.47 16 3 C -0.15 -2.10 9.56 71.98 0.69 -1.41 16 4 O -0.31 -8.11 9.76 -90.66 -0.88 -9.00 16 5 C 0.32 9.58 7.45 84.73 0.63 10.21 16 6 C -0.16 -5.24 9.78 22.68 0.22 -5.02 16 7 C 0.01 0.36 5.02 -19.82 -0.10 0.26 16 8 C -0.08 -3.41 5.10 -20.05 -0.10 -3.51 16 9 C -0.19 -7.73 9.75 22.65 0.22 -7.51 16 10 C -0.10 -4.48 10.01 22.19 0.22 -4.26 16 11 C -0.16 -7.86 8.69 22.75 0.20 -7.67 16 12 C 0.06 3.20 5.57 -21.27 -0.12 3.08 16 13 C -0.49 -27.37 8.78 23.44 0.21 -27.16 16 14 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 15 C 0.04 2.05 5.14 85.25 0.44 2.49 16 16 N -0.81 -41.17 10.96 21.83 0.24 -40.93 16 17 Si 0.99 38.01 29.60 68.60 2.03 40.04 16 18 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 19 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 20 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 21 C -0.03 -1.72 7.14 23.12 0.17 -1.56 16 22 F -0.17 -8.99 16.13 44.97 0.73 -8.26 16 23 C 0.00 -0.03 7.13 22.67 0.16 0.14 16 24 F -0.14 -5.74 16.81 44.97 0.76 -4.98 16 25 C 0.13 3.69 11.15 84.61 0.94 4.64 16 26 N -0.52 -14.76 8.62 -309.02 -2.66 -17.43 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.76 6.98 -2.39 -0.02 1.74 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.16 4.89 8.06 -2.91 -0.02 4.86 16 35 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 36 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 37 H 0.12 6.13 6.15 -2.91 -0.02 6.11 16 38 H 0.30 13.29 8.30 -92.71 -0.77 12.52 16 39 H 0.20 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -62.81 346.36 5.84 -56.97 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 1.08 Total: 21.45 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 4.56 Total: -37.85 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -2.43 Total: -58.36 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.88 Total: -9.00 kcal Atomic # 9 Polarization: -14.73 SS G_CDS: 1.48 Total: -13.25 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -62.81 5.84 -56.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206630889.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.629 kcal (2) G-P(sol) polarization free energy of solvation -62.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds