Wall clock time and date at job start Tue Mar 31 2020 14:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47038 * 2 1 4 4 O 1.42901 * 109.47007 * 119.99657 * 2 1 3 5 5 C 1.35735 * 117.00187 * 90.00215 * 4 2 1 6 6 C 1.38608 * 119.58739 * 179.97438 * 5 4 2 7 7 C 1.39804 * 118.96486 * 179.67981 * 6 5 4 8 8 C 1.47887 * 120.90956 * 180.30923 * 7 6 5 9 9 C 1.39044 * 120.25798 * 65.29417 * 8 7 6 10 10 C 1.38179 * 120.18291 * 179.97438 * 9 8 7 11 11 C 1.38786 * 120.71242 * 0.02562 * 10 9 8 12 12 C 1.37771 * 120.51825 * 0.02562 * 11 10 9 13 13 F 1.35101 * 120.10630 * 179.97438 * 12 11 10 14 14 C 1.41037 * 119.79389 * 359.74139 * 12 11 10 15 15 C 1.40796 * 120.34575 * 180.25366 * 14 12 11 16 16 H 1.07997 * 120.00580 * 217.16542 * 15 14 12 17 17 C 1.40113 * 119.99402 * 37.17057 * 15 14 12 18 18 N 1.30762 * 120.00437 * 19.43918 * 17 15 14 19 19 Si 1.86806 * 119.99728 * 199.43970 * 17 15 14 20 20 H 1.48506 * 109.46794 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46990 * 119.99964 * 19 17 15 22 22 H 1.48496 * 109.47115 * 240.00133 * 19 17 15 23 23 C 1.40349 * 118.17912 * 0.59637 * 7 6 5 24 24 F 1.35094 * 120.47084 * 179.71576 * 23 7 6 25 25 C 1.38023 * 119.06078 * 359.44345 * 23 7 6 26 26 N 1.32036 * 120.94339 * 0.25174 * 25 23 7 27 27 H 1.08997 * 109.47323 * 300.00197 * 1 2 3 28 28 H 1.08999 * 109.47045 * 60.00396 * 1 2 3 29 29 H 1.09004 * 109.47104 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47395 * 239.99342 * 2 1 3 31 31 H 1.09005 * 109.47023 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46879 * 299.99706 * 3 2 1 33 33 H 1.08997 * 109.47224 * 59.99743 * 3 2 1 34 34 H 1.07997 * 120.51198 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.90810 * 359.95126 * 9 8 7 36 36 H 1.07994 * 119.64265 * 180.02562 * 10 9 8 37 37 H 1.07999 * 119.74318 * 179.97438 * 11 10 9 38 38 H 0.96998 * 120.00093 * 179.97438 * 18 17 15 39 39 H 1.08004 * 119.52891 * 180.27509 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2118 -2.0115 1.0654 6 6 2.6738 -2.7182 2.1646 7 6 2.8745 -4.0968 2.0476 8 6 3.3597 -4.8939 3.1949 9 6 2.5740 -5.0331 4.3336 10 6 3.0286 -5.7787 5.4044 11 6 4.2704 -6.3970 5.3613 12 6 5.0732 -6.2775 4.2481 13 9 6.2808 -6.8825 4.2153 14 6 4.6285 -5.5257 3.1408 15 6 5.4371 -5.4003 1.9951 16 1 5.4626 -4.4675 1.4515 17 6 6.2088 -6.4859 1.5602 18 7 5.9138 -7.6974 1.9542 19 14 7.6591 -6.2026 0.4174 20 1 7.7809 -4.7522 0.1225 21 1 8.9043 -6.6808 1.0701 22 1 7.4453 -6.9494 -0.8482 23 6 2.6087 -4.7026 0.8098 24 9 2.7921 -6.0306 0.6436 25 6 2.1518 -3.9232 -0.2337 26 7 1.9688 -2.6244 -0.0815 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 2.8704 -2.2126 3.0985 35 1 1.6058 -4.5569 4.3813 36 1 2.4110 -5.8814 6.2844 37 1 4.6104 -6.9757 6.2074 38 1 6.4479 -8.4489 1.6528 39 1 1.9406 -4.3822 -1.1882 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206652079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:05 Heat of formation + Delta-G solvation = -77.253389 kcal Electronic energy + Delta-G solvation = -26668.636925 eV Core-core repulsion = 22598.302063 eV Total energy + Delta-G solvation = -4070.334862 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -47.94365 -47.07496 -40.21943 -38.12113 -37.11764 -33.77773 -33.15291 -32.66994 -29.93303 -29.23977 -28.64685 -27.29919 -25.50280 -23.87212 -22.76287 -21.55438 -21.08113 -20.12987 -18.02240 -17.51473 -16.87805 -16.71406 -15.72155 -15.51945 -15.40499 -14.83573 -14.70323 -14.39204 -14.35425 -14.16571 -13.80284 -13.64848 -13.09323 -12.99211 -12.87129 -12.59473 -12.37168 -12.27162 -11.99623 -11.95820 -11.75274 -11.54770 -11.39790 -11.22473 -10.88698 -10.75169 -10.70366 -10.59651 -10.33496 -9.74374 -9.26819 -9.22816 -9.02107 -7.88426 -7.62734 -7.30658 -6.93203 -4.56947 1.44957 1.56787 2.49448 2.64966 3.04477 3.08112 3.10106 3.23187 3.88194 4.06852 4.45647 4.54529 4.78378 4.86139 4.97278 5.17415 5.20403 5.31921 5.40700 5.46782 5.51895 5.67255 5.78634 5.85741 5.89805 5.95093 6.01627 6.10715 6.14224 6.16373 6.40634 6.44156 6.64017 6.87045 6.94353 7.01863 7.31539 7.43348 7.56415 7.62431 7.66716 7.96918 8.12049 8.24918 8.59587 8.69079 10.05392 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.004630 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.895157 B = 6046.518706 C = 6986.308481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.081 3.919 3 C -0.150 4.150 4 O -0.303 6.303 5 C 0.302 3.698 6 C -0.167 4.167 7 C 0.064 3.936 8 C -0.174 4.174 9 C -0.070 4.070 10 C -0.217 4.217 11 C -0.127 4.127 12 C 0.043 3.957 13 F -0.142 7.142 14 C 0.116 3.884 15 C -0.453 4.453 16 H 0.083 0.917 17 C 0.084 3.916 18 N -0.761 5.761 19 Si 0.904 3.096 20 H -0.259 1.259 21 H -0.269 1.269 22 H -0.272 1.272 23 C 0.039 3.961 24 F -0.114 7.114 25 C 0.093 3.907 26 N -0.531 5.531 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.143 0.857 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.286 0.714 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.424 9.425 -3.375 11.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.025 3.975 3 C -0.207 4.207 4 O -0.212 6.212 5 C 0.124 3.876 6 C -0.188 4.188 7 C 0.056 3.944 8 C -0.176 4.176 9 C -0.089 4.089 10 C -0.236 4.236 11 C -0.146 4.146 12 C 0.023 3.977 13 F -0.120 7.120 14 C 0.112 3.888 15 C -0.481 4.481 16 H 0.101 0.899 17 C -0.139 4.139 18 N -0.383 5.383 19 Si 0.728 3.272 20 H -0.183 1.183 21 H -0.194 1.194 22 H -0.197 1.197 23 C 0.017 3.983 24 F -0.092 7.092 25 C -0.062 4.062 26 N -0.255 5.255 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.161 0.839 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.573 9.772 -3.903 12.407 hybrid contribution 1.126 -0.964 -0.059 1.483 sum -5.447 8.808 -3.962 11.089 Atomic orbital electron populations 1.22205 0.95274 1.02853 1.02130 1.22251 0.94111 0.92618 0.88559 1.21897 1.02035 0.94197 1.02596 1.86287 1.80733 1.16113 1.38032 1.19558 0.93807 0.84345 0.89905 1.21133 1.06134 0.92402 0.99141 1.18959 0.91181 0.91657 0.92610 1.18043 0.95722 1.09962 0.93859 1.20546 0.97564 0.98186 0.92592 1.20046 0.97284 1.06918 0.99340 1.20686 0.95277 1.01546 0.97111 1.17744 0.82949 1.02232 0.94778 1.91341 1.42382 1.81606 1.96701 1.17341 0.90243 0.89272 0.91927 1.19304 1.21137 0.98756 1.08869 0.89945 1.25801 0.97362 0.94214 0.96495 1.69720 1.34016 0.99573 1.35036 0.86298 0.81074 0.80115 0.79710 1.18260 1.19382 1.19732 1.18755 1.04486 0.79909 0.95131 1.91560 1.92701 1.29345 1.95608 1.22186 0.97767 0.87998 0.98246 1.67089 1.22734 1.11196 1.24476 0.92202 0.91487 0.91923 0.89373 0.91842 0.90832 0.91799 0.83919 0.88357 0.88006 0.87894 0.90331 0.82129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 9.53 37.16 0.35 -1.45 16 2 C 0.08 1.01 3.11 -26.73 -0.08 0.92 16 3 C -0.15 -1.46 9.56 37.16 0.36 -1.10 16 4 O -0.30 -4.73 9.76 -18.91 -0.18 -4.91 16 5 C 0.30 5.25 7.45 -17.22 -0.13 5.12 16 6 C -0.17 -3.09 9.79 -38.86 -0.38 -3.47 16 7 C 0.06 1.33 4.52 -104.57 -0.47 0.86 16 8 C -0.17 -3.99 5.15 -104.27 -0.54 -4.53 16 9 C -0.07 -1.47 9.73 -39.30 -0.38 -1.85 16 10 C -0.22 -4.46 10.03 -39.40 -0.40 -4.86 16 11 C -0.13 -2.84 9.99 -39.55 -0.40 -3.23 16 12 C 0.04 1.10 6.68 -38.69 -0.26 0.84 16 13 F -0.14 -3.74 14.30 2.25 0.03 -3.71 16 14 C 0.12 2.96 5.34 -106.49 -0.57 2.39 16 15 C -0.45 -11.67 7.19 -37.91 -0.27 -11.94 16 16 H 0.08 2.11 7.60 -52.49 -0.40 1.71 16 17 C 0.08 2.10 4.52 -17.30 -0.08 2.02 16 18 N -0.76 -19.77 11.14 55.56 0.62 -19.15 16 19 Si 0.90 19.01 29.60 -169.99 -5.03 13.98 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 23 C 0.04 0.80 6.71 -38.87 -0.26 0.54 16 24 F -0.11 -2.57 16.33 2.25 0.04 -2.54 16 25 C 0.09 1.61 11.15 -17.54 -0.20 1.41 16 26 N -0.53 -9.04 8.62 -13.37 -0.12 -9.16 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.17 6.98 -51.93 -0.36 0.81 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.14 2.45 8.06 -52.49 -0.42 2.03 16 35 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 36 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 38 H 0.29 6.79 8.29 -40.82 -0.34 6.45 16 39 H 0.16 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -27.85 343.53 -7.71 -35.57 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -4.55 Total: 3.08 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -3.70 Total: -18.33 kcal Atomic # 7 Polarization: -28.81 SS G_CDS: 0.50 Total: -28.31 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.18 Total: -4.91 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.07 Total: -6.24 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.85 -7.71 -35.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206652079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.687 kcal (2) G-P(sol) polarization free energy of solvation -27.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds