Wall clock time and date at job start Tue Mar 31 2020 14:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47038 * 2 1 4 4 O 1.42901 * 109.47007 * 119.99657 * 2 1 3 5 5 C 1.35735 * 117.00187 * 90.00215 * 4 2 1 6 6 C 1.38608 * 119.58739 * 179.97438 * 5 4 2 7 7 C 1.39804 * 118.96486 * 179.67981 * 6 5 4 8 8 C 1.47887 * 120.90956 * 180.30923 * 7 6 5 9 9 C 1.39044 * 120.25798 * 65.29417 * 8 7 6 10 10 C 1.38179 * 120.18291 * 179.97438 * 9 8 7 11 11 C 1.38786 * 120.71242 * 0.02562 * 10 9 8 12 12 C 1.37771 * 120.51825 * 0.02562 * 11 10 9 13 13 F 1.35101 * 120.10630 * 179.97438 * 12 11 10 14 14 C 1.41037 * 119.79389 * 359.74139 * 12 11 10 15 15 C 1.40796 * 120.34575 * 180.25366 * 14 12 11 16 16 H 1.07997 * 120.00580 * 217.16542 * 15 14 12 17 17 C 1.40113 * 119.99402 * 37.17057 * 15 14 12 18 18 N 1.30762 * 120.00437 * 19.43918 * 17 15 14 19 19 Si 1.86806 * 119.99728 * 199.43970 * 17 15 14 20 20 H 1.48506 * 109.46794 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46990 * 119.99964 * 19 17 15 22 22 H 1.48496 * 109.47115 * 240.00133 * 19 17 15 23 23 C 1.40349 * 118.17912 * 0.59637 * 7 6 5 24 24 F 1.35094 * 120.47084 * 179.71576 * 23 7 6 25 25 C 1.38023 * 119.06078 * 359.44345 * 23 7 6 26 26 N 1.32036 * 120.94339 * 0.25174 * 25 23 7 27 27 H 1.08997 * 109.47323 * 300.00197 * 1 2 3 28 28 H 1.08999 * 109.47045 * 60.00396 * 1 2 3 29 29 H 1.09004 * 109.47104 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47395 * 239.99342 * 2 1 3 31 31 H 1.09005 * 109.47023 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46879 * 299.99706 * 3 2 1 33 33 H 1.08997 * 109.47224 * 59.99743 * 3 2 1 34 34 H 1.07997 * 120.51198 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.90810 * 359.95126 * 9 8 7 36 36 H 1.07994 * 119.64265 * 180.02562 * 10 9 8 37 37 H 1.07999 * 119.74318 * 179.97438 * 11 10 9 38 38 H 0.96998 * 120.00093 * 179.97438 * 18 17 15 39 39 H 1.08004 * 119.52891 * 180.27509 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2118 -2.0115 1.0654 6 6 2.6738 -2.7182 2.1646 7 6 2.8745 -4.0968 2.0476 8 6 3.3597 -4.8939 3.1949 9 6 2.5740 -5.0331 4.3336 10 6 3.0286 -5.7787 5.4044 11 6 4.2704 -6.3970 5.3613 12 6 5.0732 -6.2775 4.2481 13 9 6.2808 -6.8825 4.2153 14 6 4.6285 -5.5257 3.1408 15 6 5.4371 -5.4003 1.9951 16 1 5.4626 -4.4675 1.4515 17 6 6.2088 -6.4859 1.5602 18 7 5.9138 -7.6974 1.9542 19 14 7.6591 -6.2026 0.4174 20 1 7.7809 -4.7522 0.1225 21 1 8.9043 -6.6808 1.0701 22 1 7.4453 -6.9494 -0.8482 23 6 2.6087 -4.7026 0.8098 24 9 2.7921 -6.0306 0.6436 25 6 2.1518 -3.9232 -0.2337 26 7 1.9688 -2.6244 -0.0815 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 2.8704 -2.2126 3.0985 35 1 1.6058 -4.5569 4.3813 36 1 2.4110 -5.8814 6.2844 37 1 4.6104 -6.9757 6.2074 38 1 6.4479 -8.4489 1.6528 39 1 1.9406 -4.3822 -1.1882 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206652079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:04 Heat of formation + Delta-G solvation = -91.352516 kcal Electronic energy + Delta-G solvation = -26669.248309 eV Core-core repulsion = 22598.302063 eV Total energy + Delta-G solvation = -4070.946246 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.58113 -49.00250 -41.58111 -39.58947 -38.64402 -35.58719 -34.25458 -34.13979 -31.68554 -30.66899 -30.30349 -28.10821 -27.29890 -25.36451 -24.20410 -22.91129 -22.81300 -21.53548 -19.52122 -19.18973 -18.33053 -18.28459 -17.35009 -17.21725 -16.85736 -16.42497 -16.08134 -16.05518 -15.92226 -15.70474 -15.44036 -14.87161 -14.71320 -14.39621 -14.34760 -13.87441 -13.80104 -13.57754 -13.34866 -13.19050 -13.14162 -13.10614 -12.93390 -12.74998 -12.45294 -12.40484 -12.04366 -11.85087 -11.65162 -11.46984 -11.02690 -10.70323 -10.57774 -9.43104 -9.28657 -9.10237 -8.74741 -6.45450 -0.03740 0.08196 0.76410 0.87584 1.31582 1.40409 1.44803 2.01338 2.15343 2.60010 2.68578 3.21688 3.28228 3.42287 3.75817 3.92841 3.99843 4.08940 4.12075 4.25787 4.32500 4.33769 4.52401 4.53828 4.74642 4.76980 4.84156 4.89193 4.92327 4.96625 5.07661 5.14604 5.21348 5.25257 5.31508 5.46132 5.56848 5.69019 5.88283 5.90251 6.16659 6.27537 6.39640 6.71213 6.76872 6.85170 8.26492 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.004630 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.895157 B = 6046.518706 C = 6986.308481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.070 3.930 3 C -0.145 4.145 4 O -0.308 6.308 5 C 0.310 3.690 6 C -0.170 4.170 7 C 0.046 3.954 8 C -0.175 4.175 9 C -0.076 4.076 10 C -0.202 4.202 11 C -0.130 4.130 12 C 0.002 3.998 13 F -0.157 7.157 14 C 0.087 3.913 15 C -0.479 4.479 16 H 0.070 0.930 17 C 0.047 3.953 18 N -0.801 5.801 19 Si 0.962 3.038 20 H -0.259 1.259 21 H -0.266 1.266 22 H -0.262 1.262 23 C 0.011 3.989 24 F -0.135 7.135 25 C 0.112 3.888 26 N -0.524 5.524 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.152 0.848 35 H 0.129 0.871 36 H 0.142 0.858 37 H 0.124 0.876 38 H 0.289 0.711 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.987 11.414 -3.761 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.014 3.986 3 C -0.202 4.202 4 O -0.216 6.216 5 C 0.131 3.869 6 C -0.191 4.191 7 C 0.037 3.963 8 C -0.176 4.176 9 C -0.094 4.094 10 C -0.221 4.221 11 C -0.150 4.150 12 C -0.018 4.018 13 F -0.136 7.136 14 C 0.084 3.916 15 C -0.508 4.508 16 H 0.088 0.912 17 C -0.171 4.171 18 N -0.425 5.425 19 Si 0.783 3.217 20 H -0.183 1.183 21 H -0.190 1.190 22 H -0.187 1.187 23 C -0.011 4.011 24 F -0.114 7.114 25 C -0.044 4.044 26 N -0.248 5.248 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.170 0.830 35 H 0.147 0.853 36 H 0.160 0.840 37 H 0.142 0.858 38 H 0.099 0.901 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -8.151 11.789 -4.279 14.958 hybrid contribution 1.393 -1.405 0.134 1.983 sum -6.757 10.384 -4.144 13.064 Atomic orbital electron populations 1.22178 0.93844 1.02205 1.03713 1.22635 0.95343 0.93633 0.86977 1.21918 1.01667 0.92428 1.04212 1.86298 1.80510 1.14991 1.39840 1.19623 0.92573 0.85175 0.89498 1.21154 1.06218 0.91603 1.00094 1.18994 0.92295 0.92530 0.92449 1.18430 0.95061 1.08947 0.95205 1.20966 0.98525 0.97973 0.91959 1.20554 0.96556 1.04636 1.00347 1.21032 0.95631 1.01527 0.96770 1.18173 0.83451 1.03956 0.96229 1.91281 1.43341 1.82076 1.96878 1.17683 0.91427 0.90345 0.92146 1.19279 1.23123 0.98662 1.09717 0.91165 1.26487 0.99204 0.93757 0.97661 1.69765 1.35343 1.00230 1.37147 0.85439 0.78112 0.79861 0.78250 1.18273 1.19026 1.18671 1.19024 1.06607 0.79430 0.96064 1.91500 1.93204 1.30906 1.95761 1.22613 0.95575 0.87722 0.98516 1.67247 1.22452 1.10851 1.24211 0.91639 0.88929 0.93634 0.90215 0.92471 0.88152 0.91239 0.82995 0.85295 0.84028 0.85793 0.90069 0.78979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.53 71.98 0.69 -2.37 16 2 C 0.07 1.57 3.11 30.59 0.10 1.66 16 3 C -0.15 -2.40 9.56 71.98 0.69 -1.71 16 4 O -0.31 -9.04 9.76 -90.59 -0.88 -9.93 16 5 C 0.31 10.34 7.45 84.71 0.63 10.97 16 6 C -0.17 -6.16 9.79 22.74 0.22 -5.93 16 7 C 0.05 1.90 4.52 -19.83 -0.09 1.81 16 8 C -0.17 -8.07 5.15 -19.64 -0.10 -8.17 16 9 C -0.08 -3.06 9.73 22.45 0.22 -2.84 16 10 C -0.20 -7.87 10.03 22.39 0.22 -7.64 16 11 C -0.13 -5.77 9.99 22.29 0.22 -5.55 16 12 C 0.00 0.11 6.68 22.85 0.15 0.26 16 13 F -0.16 -8.63 14.30 44.97 0.64 -7.99 16 14 C 0.09 4.60 5.34 -21.08 -0.11 4.48 16 15 C -0.48 -25.72 7.19 23.35 0.17 -25.56 16 16 H 0.07 3.78 7.60 -2.91 -0.02 3.75 16 17 C 0.05 2.46 4.52 85.31 0.39 2.84 16 18 N -0.80 -43.35 11.14 21.86 0.24 -43.11 16 19 Si 0.96 40.14 29.60 68.60 2.03 42.17 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 C 0.01 0.44 6.71 22.73 0.15 0.59 16 24 F -0.14 -6.29 16.33 44.97 0.73 -5.55 16 25 C 0.11 3.71 11.15 84.61 0.94 4.65 16 26 N -0.52 -16.98 8.62 -309.04 -2.66 -19.64 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.04 1.01 8.14 -2.38 -0.02 1.00 16 30 H 0.08 1.94 6.98 -2.39 -0.02 1.92 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.15 5.09 8.06 -2.91 -0.02 5.06 16 35 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 36 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 37 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.29 14.33 8.29 -92.71 -0.77 13.56 16 39 H 0.19 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -62.52 343.53 5.67 -56.85 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 1.08 Total: 19.70 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 4.49 Total: -32.50 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -2.42 Total: -62.75 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.88 Total: -9.93 kcal Atomic # 9 Polarization: -14.92 SS G_CDS: 1.38 Total: -13.54 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -62.52 5.67 -56.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206652079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.500 kcal (2) G-P(sol) polarization free energy of solvation -62.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds