Wall clock time and date at job start Tue Mar 31 2020 14:12:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53000 * 109.46886 * 2 1
4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1
5 5 C 1.36007 * 116.99577 * 179.97438 * 4 3 2
6 6 C 1.38787 * 119.96489 * 0.02562 * 5 4 3
7 7 C 1.38335 * 120.31073 * 180.02562 * 6 5 4
8 8 C 1.38163 * 120.21982 * 359.96979 * 7 6 5
9 9 F 1.35103 * 120.03883 * 179.97438 * 8 7 6
10 10 C 1.39893 * 119.92050 * 0.02562 * 8 7 6
11 11 C 1.47853 * 120.15213 * 180.02562 * 10 8 7
12 12 C 1.40326 * 120.34661 * 294.72274 * 11 10 8
13 13 C 1.36646 * 118.59902 * 179.72557 * 12 11 10
14 14 C 1.40901 * 119.25915 * 0.55022 * 13 12 11
15 15 C 1.40948 * 119.67347 * 179.69210 * 14 13 12
16 16 H 1.08000 * 120.00093 * 0.02888 * 15 14 13
17 17 C 1.40084 * 119.99790 * 180.02562 * 15 14 13
18 18 N 1.30729 * 120.00079 * 0.02562 * 17 15 14
19 19 Si 1.86798 * 119.99835 * 180.02562 * 17 15 14
20 20 H 1.48503 * 109.47285 * 89.99924 * 19 17 15
21 21 H 1.48496 * 109.47257 * 210.00566 * 19 17 15
22 22 H 1.48510 * 109.47208 * 330.00458 * 19 17 15
23 23 N 1.33792 * 120.65180 * 359.71412 * 14 13 12
24 24 C 1.31182 * 121.50334 * 0.02562 * 23 14 13
25 25 C 1.38591 * 119.95772 * 179.72560 * 5 4 3
26 26 F 1.35106 * 120.11482 * 0.02562 * 25 5 4
27 27 H 1.09002 * 109.47508 * 59.99571 * 1 2 3
28 28 H 1.09000 * 109.47437 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.47109 * 299.99380 * 1 2 3
30 30 H 1.09001 * 109.46652 * 240.00345 * 2 1 3
31 31 H 1.08992 * 109.47514 * 120.00434 * 2 1 3
32 32 H 1.09002 * 109.47398 * 300.00496 * 3 2 1
33 33 H 1.09001 * 109.47194 * 60.00677 * 3 2 1
34 34 H 1.08003 * 119.84433 * 359.97438 * 6 5 4
35 35 H 1.07995 * 119.89192 * 179.97438 * 7 6 5
36 36 H 1.07999 * 120.70277 * 0.02562 * 12 11 10
37 37 H 1.07993 * 120.36867 * 180.26806 * 13 12 11
38 38 H 0.97000 * 119.99481 * 179.97438 * 18 17 15
39 39 H 1.08003 * 119.65653 * 179.97438 * 24 23 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 8 3.4690 1.4425 -0.0006
5 6 4.0864 2.6543 -0.0012
6 6 3.3297 3.8178 -0.0007
7 6 3.9502 5.0542 -0.0019
8 6 5.3292 5.1402 -0.0029
9 9 5.9314 6.3496 -0.0046
10 6 6.1011 3.9735 -0.0034
11 6 7.5771 4.0595 -0.0039
12 6 8.2550 4.6065 -1.1041
13 6 9.6192 4.6738 -1.0643
14 6 10.3002 4.1843 0.0679
15 6 11.7076 4.2434 0.1153
16 1 12.2587 4.6629 -0.7134
17 6 12.3916 3.7582 1.2374
18 7 11.7245 3.2501 2.2404
19 14 14.2568 3.8372 1.3006
20 1 14.6774 5.1246 1.9098
21 1 14.7726 2.7104 2.1187
22 1 14.8034 3.7397 -0.0768
23 7 9.6240 3.6635 1.0982
24 6 8.3143 3.5899 1.0916
25 6 5.4704 2.7259 0.0039
26 9 6.2078 1.5938 0.0090
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3633 0.5137 0.8900
30 1 1.8933 -0.5138 -0.8900
31 1 1.8934 -0.5138 0.8899
32 1 1.6765 1.9564 -0.8899
33 1 1.6767 1.9563 0.8900
34 1 2.2514 3.7576 -0.0002
35 1 3.3549 5.9552 -0.0019
36 1 7.7097 4.9711 -1.9621
37 1 10.1695 5.0933 -1.8934
38 1 12.1982 2.9138 3.0171
39 1 7.7987 3.1633 1.9394
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001206739078.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:12:49
Heat of formation + Delta-G solvation = -80.303358 kcal
Electronic energy + Delta-G solvation = -25640.936033 eV
Core-core repulsion = 21570.468915 eV
Total energy + Delta-G solvation = -4070.467118 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 319.112 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-48.40288 -48.31515 -39.89544 -38.33160 -37.07417 -34.19004 -33.81463 -31.81411
-30.59152 -29.58738 -28.75374 -26.76442 -25.67260 -23.11567 -22.35953 -21.74217
-21.61674 -20.53754 -18.04998 -17.60120 -17.49291 -17.05228 -16.55132 -15.71891
-15.42083 -15.32212 -15.04978 -14.77835 -14.54648 -14.26816 -14.07062 -14.04847
-14.00503 -13.26324 -12.68059 -12.57254 -12.40831 -12.25232 -12.15687 -12.10124
-11.74532 -11.62281 -11.29458 -11.22110 -11.14545 -11.08550 -10.84487 -10.64933
-10.50077 -10.04951 -9.49222 -8.75552 -8.30133 -7.94576 -7.66281 -7.51653
-6.52481 -4.64470 1.16462 1.28689 2.58106 2.97902 3.03060 3.05152
3.06409 3.11739 3.60959 3.85195 4.24239 4.55813 4.58687 4.59185
4.66240 4.83955 4.90338 5.03463 5.10679 5.14352 5.26138 5.35750
5.63390 5.68724 5.75845 5.82541 5.90469 5.98845 6.01726 6.09681
6.13650 6.29406 6.34070 6.68640 6.74857 6.86013 6.98523 7.29625
7.35039 7.47064 7.63052 7.92725 8.09540 8.51664 8.80324 10.00363
10.17359
Molecular weight = 319.11amu
Principal moments of inertia in cm(-1)
A = 0.021595 B = 0.002998 C = 0.002737
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1296.266039 B = 9336.207067 C =10226.818652
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.125 4.125
3 C 0.058 3.942
4 O -0.308 6.308
5 C 0.086 3.914
6 C -0.179 4.179
7 C -0.126 4.126
8 C 0.085 3.915
9 F -0.129 7.129
10 C -0.007 4.007
11 C -0.291 4.291
12 C -0.022 4.022
13 C -0.272 4.272
14 C 0.256 3.744
15 C -0.412 4.412
16 H 0.088 0.912
17 C 0.064 3.936
18 N -0.701 5.701
19 Si 0.912 3.088
20 H -0.267 1.267
21 H -0.274 1.274
22 H -0.260 1.260
23 N -0.486 5.486
24 C 0.169 3.831
25 C 0.092 3.908
26 F -0.119 7.119
27 H 0.057 0.943
28 H 0.063 0.937
29 H 0.057 0.943
30 H 0.074 0.926
31 H 0.074 0.926
32 H 0.062 0.938
33 H 0.062 0.938
34 H 0.139 0.861
35 H 0.138 0.862
36 H 0.095 0.905
37 H 0.102 0.898
38 H 0.277 0.723
39 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.642 -1.897 -2.553 17.927
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.162 4.162
3 C -0.017 4.017
4 O -0.222 6.222
5 C 0.040 3.960
6 C -0.197 4.197
7 C -0.145 4.145
8 C 0.065 3.935
9 F -0.107 7.107
10 C -0.010 4.010
11 C -0.297 4.297
12 C -0.046 4.046
13 C -0.294 4.294
14 C 0.133 3.867
15 C -0.441 4.441
16 H 0.106 0.894
17 C -0.164 4.164
18 N -0.321 5.321
19 Si 0.735 3.265
20 H -0.192 1.192
21 H -0.199 1.199
22 H -0.184 1.184
23 N -0.198 5.198
24 C 0.000 4.000
25 C 0.072 3.928
26 F -0.097 7.097
27 H 0.076 0.924
28 H 0.082 0.918
29 H 0.076 0.924
30 H 0.093 0.907
31 H 0.093 0.907
32 H 0.080 0.920
33 H 0.081 0.919
34 H 0.156 0.844
35 H 0.155 0.845
36 H 0.113 0.887
37 H 0.120 0.880
38 H 0.088 0.912
39 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -16.919 -2.493 -1.640 17.180
hybrid contribution 0.221 0.542 -0.694 0.908
sum -16.698 -1.950 -2.334 16.973
Atomic orbital electron populations
1.21687 0.94293 1.02487 1.02144 1.21486 0.95884 0.94911 1.03962
1.22893 0.78563 0.98880 1.01410 1.86138 1.21134 1.25914 1.89022
1.18836 0.90477 0.85400 1.01297 1.20753 0.99818 0.90582 1.08592
1.20795 0.92521 0.98451 1.02767 1.17508 0.89832 0.80461 1.05668
1.91501 1.84025 1.41278 1.93908 1.18746 0.95009 0.89076 0.98146
1.18601 0.88366 1.21513 1.01232 1.20454 0.94139 0.94813 0.95162
1.21367 0.93885 1.12662 1.01501 1.18660 0.93793 0.87501 0.86795
1.19736 0.90548 1.31888 1.01972 0.89435 1.26194 1.01114 0.93912
0.95135 1.70132 1.37279 1.21261 1.03410 0.86254 0.81681 0.78875
0.79673 1.19205 1.19915 1.18356 1.68812 1.05175 1.19009 1.26801
1.22619 0.91261 0.92091 0.93981 1.16884 0.85131 0.82791 1.08038
1.91522 1.76598 1.47785 1.93836 0.92393 0.91762 0.92375 0.90729
0.90685 0.91984 0.91932 0.84363 0.84451 0.88707 0.87985 0.91207
0.86414
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16
2 C -0.12 -1.00 6.30 -26.73 -0.17 -1.17 16
3 C 0.06 0.55 4.74 37.16 0.18 0.73 16
4 O -0.31 -4.41 10.00 -19.76 -0.20 -4.61 16
5 C 0.09 1.33 6.68 -39.25 -0.26 1.06 16
6 C -0.18 -2.25 9.03 -39.34 -0.36 -2.60 16
7 C -0.13 -1.70 10.01 -39.57 -0.40 -2.10 16
8 C 0.09 1.49 7.25 -38.99 -0.28 1.20 16
9 F -0.13 -2.42 16.70 2.25 0.04 -2.38 16
10 C -0.01 -0.14 5.35 -104.76 -0.56 -0.70 16
11 C -0.29 -6.77 4.74 -104.46 -0.49 -7.26 16
12 C -0.02 -0.52 9.67 -39.37 -0.38 -0.90 16
13 C -0.27 -6.74 9.76 -39.15 -0.38 -7.12 16
14 C 0.26 7.02 6.55 -84.98 -0.56 6.46 16
15 C -0.41 -10.87 9.12 -37.86 -0.35 -11.21 16
16 H 0.09 2.13 7.85 -52.49 -0.41 1.72 16
17 C 0.06 1.60 5.50 -17.33 -0.10 1.50 16
18 N -0.70 -18.49 11.44 55.55 0.64 -17.86 16
19 Si 0.91 18.19 29.56 -169.99 -5.02 13.17 16
20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16
21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16
22 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16
23 N -0.49 -13.62 7.83 -10.83 -0.08 -13.71 16
24 C 0.17 4.28 10.74 -17.11 -0.18 4.09 16
25 C 0.09 1.73 7.26 -38.87 -0.28 1.45 16
26 F -0.12 -2.49 16.52 2.25 0.04 -2.45 16
27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16
29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
32 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16
33 H 0.06 0.51 7.66 -51.93 -0.40 0.12 16
34 H 0.14 1.25 6.27 -52.48 -0.33 0.92 16
35 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16
36 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16
37 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16
38 H 0.28 6.56 8.29 -40.82 -0.34 6.22 16
39 H 0.12 2.78 8.06 -52.48 -0.42 2.35 16
LS Contribution 346.64 15.07 5.22 5.22
Total: -1.00 -30.15 346.64 -8.05 -38.20
By element:
Atomic # 1 Polarization: 5.95 SS G_CDS: -4.48 Total: 1.47 kcal
Atomic # 6 Polarization: -12.86 SS G_CDS: -4.20 Total: -17.06 kcal
Atomic # 7 Polarization: -32.12 SS G_CDS: 0.55 Total: -31.56 kcal
Atomic # 8 Polarization: -4.41 SS G_CDS: -0.20 Total: -4.61 kcal
Atomic # 9 Polarization: -4.91 SS G_CDS: 0.07 Total: -4.84 kcal
Atomic # 14 Polarization: 18.19 SS G_CDS: -5.02 Total: 13.17 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -30.15 -8.05 -38.20 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001206739078.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.102 kcal
(2) G-P(sol) polarization free energy of solvation -30.152 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.253 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.303 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds