Wall clock time and date at job start Tue Mar 31 2020 14:12:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53000 * 109.46886 * 2 1
4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1
5 5 C 1.36007 * 116.99577 * 179.97438 * 4 3 2
6 6 C 1.38787 * 119.96489 * 0.02562 * 5 4 3
7 7 C 1.38335 * 120.31073 * 180.02562 * 6 5 4
8 8 C 1.38163 * 120.21982 * 359.96979 * 7 6 5
9 9 F 1.35103 * 120.03883 * 179.97438 * 8 7 6
10 10 C 1.39893 * 119.92050 * 0.02562 * 8 7 6
11 11 C 1.47853 * 120.15213 * 180.02562 * 10 8 7
12 12 C 1.40326 * 120.34661 * 294.72274 * 11 10 8
13 13 C 1.36646 * 118.59902 * 179.72557 * 12 11 10
14 14 C 1.40901 * 119.25915 * 0.55022 * 13 12 11
15 15 C 1.40948 * 119.67347 * 179.69210 * 14 13 12
16 16 H 1.08000 * 120.00093 * 0.02888 * 15 14 13
17 17 C 1.40084 * 119.99790 * 180.02562 * 15 14 13
18 18 N 1.30729 * 120.00079 * 0.02562 * 17 15 14
19 19 Si 1.86798 * 119.99835 * 180.02562 * 17 15 14
20 20 H 1.48503 * 109.47285 * 89.99924 * 19 17 15
21 21 H 1.48496 * 109.47257 * 210.00566 * 19 17 15
22 22 H 1.48510 * 109.47208 * 330.00458 * 19 17 15
23 23 N 1.33792 * 120.65180 * 359.71412 * 14 13 12
24 24 C 1.31182 * 121.50334 * 0.02562 * 23 14 13
25 25 C 1.38591 * 119.95772 * 179.72560 * 5 4 3
26 26 F 1.35106 * 120.11482 * 0.02562 * 25 5 4
27 27 H 1.09002 * 109.47508 * 59.99571 * 1 2 3
28 28 H 1.09000 * 109.47437 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.47109 * 299.99380 * 1 2 3
30 30 H 1.09001 * 109.46652 * 240.00345 * 2 1 3
31 31 H 1.08992 * 109.47514 * 120.00434 * 2 1 3
32 32 H 1.09002 * 109.47398 * 300.00496 * 3 2 1
33 33 H 1.09001 * 109.47194 * 60.00677 * 3 2 1
34 34 H 1.08003 * 119.84433 * 359.97438 * 6 5 4
35 35 H 1.07995 * 119.89192 * 179.97438 * 7 6 5
36 36 H 1.07999 * 120.70277 * 0.02562 * 12 11 10
37 37 H 1.07993 * 120.36867 * 180.26806 * 13 12 11
38 38 H 0.97000 * 119.99481 * 179.97438 * 18 17 15
39 39 H 1.08003 * 119.65653 * 179.97438 * 24 23 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 8 3.4690 1.4425 -0.0006
5 6 4.0864 2.6543 -0.0012
6 6 3.3297 3.8178 -0.0007
7 6 3.9502 5.0542 -0.0019
8 6 5.3292 5.1402 -0.0029
9 9 5.9314 6.3496 -0.0046
10 6 6.1011 3.9735 -0.0034
11 6 7.5771 4.0595 -0.0039
12 6 8.2550 4.6065 -1.1041
13 6 9.6192 4.6738 -1.0643
14 6 10.3002 4.1843 0.0679
15 6 11.7076 4.2434 0.1153
16 1 12.2587 4.6629 -0.7134
17 6 12.3916 3.7582 1.2374
18 7 11.7245 3.2501 2.2404
19 14 14.2568 3.8372 1.3006
20 1 14.6774 5.1246 1.9098
21 1 14.7726 2.7104 2.1187
22 1 14.8034 3.7397 -0.0768
23 7 9.6240 3.6635 1.0982
24 6 8.3143 3.5899 1.0916
25 6 5.4704 2.7259 0.0039
26 9 6.2078 1.5938 0.0090
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3633 0.5137 0.8900
30 1 1.8933 -0.5138 -0.8900
31 1 1.8934 -0.5138 0.8899
32 1 1.6765 1.9564 -0.8899
33 1 1.6767 1.9563 0.8900
34 1 2.2514 3.7576 -0.0002
35 1 3.3549 5.9552 -0.0019
36 1 7.7097 4.9711 -1.9621
37 1 10.1695 5.0933 -1.8934
38 1 12.1982 2.9138 3.0171
39 1 7.7987 3.1633 1.9394
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001206739078.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:12:48
Heat of formation + Delta-G solvation = -96.122506 kcal
Electronic energy + Delta-G solvation = -25641.622003 eV
Core-core repulsion = 21570.468915 eV
Total energy + Delta-G solvation = -4071.153088 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 319.112 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-49.82762 -49.78961 -41.03235 -40.15459 -38.33227 -35.72171 -34.79750 -33.42803
-32.51419 -30.93047 -30.25333 -27.75359 -27.18910 -24.48848 -23.92790 -23.35044
-22.69029 -21.91527 -19.52303 -19.28342 -18.74271 -18.36649 -17.63510 -17.42336
-16.78348 -16.70614 -16.38211 -16.19818 -16.06170 -15.88543 -15.64516 -15.32100
-14.88147 -14.47953 -14.21260 -14.07749 -13.92066 -13.59423 -13.27298 -13.06970
-12.95246 -12.92460 -12.83097 -12.78779 -12.59929 -12.17221 -12.07132 -11.85769
-11.78907 -11.47710 -11.27879 -10.36346 -10.12151 -9.61392 -9.40311 -9.11536
-8.39428 -6.61446 -0.13597 0.03179 0.75168 1.10562 1.38592 1.49918
1.54656 2.01003 2.18360 2.34118 2.74157 2.99313 3.40017 3.61356
3.76457 3.90023 3.95369 3.98108 4.04284 4.06775 4.24416 4.31858
4.37269 4.59291 4.60042 4.76147 4.80770 4.84562 4.86198 4.97345
4.99961 5.01144 5.10724 5.15998 5.20805 5.36514 5.38902 5.50239
5.62928 5.76824 6.01412 6.15829 6.28855 6.60854 6.83718 8.05415
8.33870
Molecular weight = 319.11amu
Principal moments of inertia in cm(-1)
A = 0.021595 B = 0.002998 C = 0.002737
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1296.266039 B = 9336.207067 C =10226.818652
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.126 4.126
3 C 0.046 3.954
4 O -0.329 6.329
5 C 0.095 3.905
6 C -0.151 4.151
7 C -0.100 4.100
8 C 0.068 3.932
9 F -0.142 7.142
10 C -0.040 4.040
11 C -0.275 4.275
12 C -0.029 4.029
13 C -0.285 4.285
14 C 0.221 3.779
15 C -0.448 4.448
16 H 0.098 0.902
17 C 0.017 3.983
18 N -0.747 5.747
19 Si 0.995 3.005
20 H -0.260 1.260
21 H -0.267 1.267
22 H -0.252 1.252
23 N -0.520 5.520
24 C 0.143 3.857
25 C 0.061 3.939
26 F -0.144 7.144
27 H 0.067 0.933
28 H 0.068 0.932
29 H 0.066 0.934
30 H 0.065 0.935
31 H 0.064 0.936
32 H 0.085 0.915
33 H 0.084 0.916
34 H 0.189 0.811
35 H 0.182 0.818
36 H 0.121 0.879
37 H 0.118 0.882
38 H 0.283 0.717
39 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.705 -1.052 -3.243 20.984
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.163 4.163
3 C -0.028 4.028
4 O -0.244 6.244
5 C 0.048 3.952
6 C -0.169 4.169
7 C -0.118 4.118
8 C 0.049 3.951
9 F -0.120 7.120
10 C -0.042 4.042
11 C -0.281 4.281
12 C -0.052 4.052
13 C -0.307 4.307
14 C 0.098 3.902
15 C -0.478 4.478
16 H 0.116 0.884
17 C -0.205 4.205
18 N -0.368 5.368
19 Si 0.814 3.186
20 H -0.184 1.184
21 H -0.192 1.192
22 H -0.175 1.175
23 N -0.232 5.232
24 C -0.024 4.024
25 C 0.040 3.960
26 F -0.123 7.123
27 H 0.086 0.914
28 H 0.087 0.913
29 H 0.085 0.915
30 H 0.084 0.916
31 H 0.083 0.917
32 H 0.103 0.897
33 H 0.102 0.898
34 H 0.206 0.794
35 H 0.199 0.801
36 H 0.139 0.861
37 H 0.136 0.864
38 H 0.094 0.906
39 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -20.038 -1.654 -2.334 20.241
hybrid contribution 0.792 0.227 -0.520 0.974
sum -19.246 -1.426 -2.854 19.509
Atomic orbital electron populations
1.21665 0.92170 1.03187 1.03055 1.21527 0.97564 0.94125 1.03118
1.23334 0.75855 1.00224 1.03418 1.86145 1.24032 1.25609 1.88599
1.18885 0.89299 0.87014 0.99997 1.21311 1.01925 0.88769 1.04923
1.21244 0.90656 1.00526 0.99395 1.17740 0.91341 0.79083 1.06980
1.91469 1.84585 1.41803 1.94186 1.18629 0.93219 0.90802 1.01574
1.18868 0.90804 1.18531 0.99875 1.20793 0.93863 0.94529 0.96026
1.21591 0.94812 1.12868 1.01410 1.19140 0.94872 0.88550 0.87685
1.20113 0.90695 1.33597 1.03377 0.88422 1.27204 1.06559 0.92709
0.94069 1.70239 1.39702 1.22521 1.04314 0.85021 0.74450 0.79131
0.79991 1.18408 1.19150 1.17488 1.68730 1.06425 1.20211 1.27882
1.22821 0.91106 0.93242 0.95221 1.17156 0.86759 0.81698 1.10343
1.91448 1.77527 1.48971 1.94333 0.91400 0.91299 0.91478 0.91607
0.91692 0.89728 0.89834 0.79367 0.80107 0.86079 0.86383 0.90624
0.86170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.18 9.91 71.98 0.71 -0.46 16
2 C -0.13 -1.72 6.30 30.59 0.19 -1.53 16
3 C 0.05 0.69 4.74 71.98 0.34 1.03 16
4 O -0.33 -8.71 10.00 -93.63 -0.94 -9.65 16
5 C 0.09 2.70 6.68 22.49 0.15 2.85 16
6 C -0.15 -3.02 9.03 22.42 0.20 -2.82 16
7 C -0.10 -2.22 10.01 22.28 0.22 -2.00 16
8 C 0.07 2.26 7.25 22.65 0.16 2.43 16
9 F -0.14 -5.19 16.70 44.97 0.75 -4.44 16
10 C -0.04 -1.58 5.35 -19.96 -0.11 -1.68 16
11 C -0.28 -13.27 4.74 -19.76 -0.09 -13.36 16
12 C -0.03 -1.37 9.67 22.41 0.22 -1.15 16
13 C -0.28 -14.68 9.76 22.55 0.22 -14.46 16
14 C 0.22 12.80 6.55 40.16 0.26 13.07 16
15 C -0.45 -24.70 9.12 23.38 0.21 -24.49 16
16 H 0.10 4.93 7.85 -2.91 -0.02 4.91 16
17 C 0.02 0.91 5.50 85.30 0.47 1.37 16
18 N -0.75 -41.37 11.44 21.85 0.25 -41.12 16
19 Si 1.00 38.17 29.56 68.60 2.03 40.20 16
20 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16
21 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16
22 H -0.25 -9.19 7.11 99.48 0.71 -8.49 16
23 N -0.52 -30.97 7.83 -188.19 -1.47 -32.45 16
24 C 0.14 7.67 10.74 85.25 0.92 8.59 16
25 C 0.06 2.28 7.26 22.73 0.16 2.45 16
26 F -0.14 -6.32 16.52 44.97 0.74 -5.58 16
27 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16
28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16
29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16
30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
32 H 0.08 0.93 7.66 -2.39 -0.02 0.91 16
33 H 0.08 0.94 7.66 -2.39 -0.02 0.93 16
34 H 0.19 1.95 6.27 -2.91 -0.02 1.93 16
35 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16
36 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16
37 H 0.12 5.50 8.06 -2.91 -0.02 5.47 16
38 H 0.28 14.05 8.29 -92.71 -0.77 13.28 16
39 H 0.12 6.13 8.06 -2.91 -0.02 6.11 16
Total: -1.00 -71.94 346.64 6.69 -65.24
By element:
Atomic # 1 Polarization: 16.88 SS G_CDS: 1.08 Total: 17.97 kcal
Atomic # 6 Polarization: -34.43 SS G_CDS: 4.25 Total: -30.18 kcal
Atomic # 7 Polarization: -72.34 SS G_CDS: -1.22 Total: -73.57 kcal
Atomic # 8 Polarization: -8.71 SS G_CDS: -0.94 Total: -9.65 kcal
Atomic # 9 Polarization: -11.51 SS G_CDS: 1.49 Total: -10.02 kcal
Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal
Total: -71.94 6.69 -65.24 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001206739078.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.879 kcal
(2) G-P(sol) polarization free energy of solvation -71.938 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.817 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.695 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.123 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds