Wall clock time and date at job start Tue Mar 31 2020 14:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42906 * 109.46748 * 119.99818 * 2 1 3 5 5 C 1.36012 * 116.99409 * 149.99924 * 4 2 1 6 6 C 1.38929 * 120.01056 * 269.72766 * 5 4 2 7 7 F 1.35096 * 119.90996 * 359.97438 * 6 5 4 8 8 C 1.38471 * 120.17807 * 179.72524 * 6 5 4 9 9 C 1.38011 * 120.20093 * 0.55434 * 8 6 5 10 10 C 1.39378 * 120.01330 * 359.72167 * 9 8 6 11 11 C 1.48322 * 120.08637 * 180.02562 * 10 9 8 12 12 C 1.40072 * 120.82100 * 129.70365 * 11 10 9 13 13 C 1.38478 * 119.42017 * 179.70312 * 12 11 10 14 14 N 1.31496 * 121.14956 * 0.58261 * 13 12 11 15 15 C 1.33665 * 121.79590 * 359.71011 * 14 13 12 16 16 C 1.41430 * 119.77516 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00027 * 179.97438 * 16 15 14 18 18 C 1.40033 * 120.00061 * 359.97438 * 16 15 14 19 19 N 1.30735 * 120.00022 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99936 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47597 * 89.99237 * 20 18 16 22 22 H 1.48506 * 109.46797 * 209.99535 * 20 18 16 23 23 H 1.48504 * 109.47011 * 329.99021 * 20 18 16 24 24 C 1.39348 * 120.82493 * 309.97792 * 11 10 9 25 25 C 1.38611 * 120.01208 * 90.00383 * 5 4 2 26 26 F 1.35099 * 120.09577 * 359.97438 * 25 5 4 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.08003 * 119.89903 * 180.25551 * 8 6 5 35 35 H 1.07999 * 119.99395 * 179.75133 * 9 8 6 36 36 H 1.08001 * 120.28976 * 359.97438 * 12 11 10 37 37 H 1.07993 * 119.43059 * 180.27192 * 13 12 11 38 38 H 0.97005 * 120.00042 * 180.02562 * 19 18 16 39 39 H 1.07994 * 120.58309 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2016 -1.3146 1.0651 6 6 3.2447 -2.6462 0.6712 7 9 2.0981 -3.3030 0.3903 8 6 4.4601 -3.3005 0.5609 9 6 5.6347 -2.6370 0.8525 10 6 5.6006 -1.3027 1.2539 11 6 6.8619 -0.5880 1.5672 12 6 7.1397 0.6609 0.9971 13 6 8.3236 1.3054 1.3146 14 7 9.1965 0.7602 2.1330 15 6 8.9825 -0.4317 2.6989 16 6 9.9510 -0.9785 3.5726 17 1 9.7816 -1.9411 4.0321 18 6 11.1295 -0.2717 3.8419 19 7 11.3348 0.8933 3.2853 20 14 12.4083 -0.9936 4.9964 21 1 13.3716 -1.8131 4.2182 22 1 13.1341 0.1064 5.6810 23 1 11.7358 -1.8477 6.0081 24 6 7.8025 -1.1450 2.4314 25 6 4.3768 -0.6411 1.3597 26 9 4.3372 0.6523 1.7478 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 4.4887 -4.3345 0.2504 35 1 6.5805 -3.1517 0.7693 36 1 6.4348 1.1192 0.3193 37 1 8.5359 2.2703 0.8786 38 1 12.1513 1.3827 3.4715 39 1 7.6269 -2.1078 2.8880 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236365136.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:12 Heat of formation + Delta-G solvation = -76.903697 kcal Electronic energy + Delta-G solvation = -26117.247687 eV Core-core repulsion = 22046.927989 eV Total energy + Delta-G solvation = -4070.319698 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.96457 -48.68875 -39.68562 -38.52109 -37.40642 -33.82116 -33.30807 -31.99380 -30.14640 -29.69504 -28.46551 -27.38900 -25.77688 -23.51921 -23.07254 -21.78333 -21.26191 -20.65984 -18.41638 -17.79968 -17.43080 -17.03951 -16.28487 -15.74147 -15.50664 -15.26952 -14.86443 -14.79725 -14.52040 -14.38726 -14.12727 -14.10814 -13.63028 -13.39525 -12.78022 -12.76260 -12.64184 -12.42233 -12.25872 -11.96304 -11.76593 -11.68799 -11.46303 -11.24264 -11.16423 -10.96815 -10.86067 -10.52901 -10.09898 -10.00093 -9.48368 -8.91011 -8.73770 -7.89267 -7.74096 -7.66875 -6.47797 -4.61062 0.83243 0.95378 2.63258 2.68847 3.05480 3.07908 3.12084 3.27892 3.53108 3.89366 3.89523 4.46650 4.65225 4.69055 4.75932 4.85253 4.92368 4.97848 5.07235 5.26608 5.41270 5.60270 5.67125 5.72555 5.75459 5.84387 5.94032 5.98324 5.99600 6.03018 6.12677 6.24672 6.39583 6.55719 6.62302 6.77270 7.03500 7.20574 7.33822 7.41531 7.53255 7.86740 8.14125 8.56220 8.81773 10.01994 10.24247 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023388 B = 0.003205 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.891150 B = 8735.487396 C = 9549.717141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.082 3.918 3 C -0.179 4.179 4 O -0.314 6.314 5 C 0.025 3.975 6 C 0.094 3.906 7 F -0.130 7.130 8 C -0.152 4.152 9 C -0.059 4.059 10 C -0.045 4.045 11 C -0.009 4.009 12 C -0.294 4.294 13 C 0.128 3.872 14 N -0.480 5.480 15 C 0.254 3.746 16 C -0.429 4.429 17 H 0.085 0.915 18 C 0.068 3.932 19 N -0.714 5.714 20 Si 0.908 3.092 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.246 4.246 25 C 0.120 3.880 26 F -0.113 7.113 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.274 0.726 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.729 -3.876 -6.607 15.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.027 3.973 3 C -0.236 4.236 4 O -0.231 6.231 5 C -0.020 4.020 6 C 0.074 3.926 7 F -0.109 7.109 8 C -0.170 4.170 9 C -0.078 4.078 10 C -0.047 4.047 11 C -0.015 4.015 12 C -0.317 4.317 13 C -0.038 4.038 14 N -0.193 5.193 15 C 0.130 3.870 16 C -0.460 4.460 17 H 0.103 0.897 18 C -0.157 4.157 19 N -0.335 5.335 20 Si 0.732 3.268 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.269 4.269 25 C 0.099 3.901 26 F -0.091 7.091 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.953 -3.223 -6.239 14.734 hybrid contribution -0.416 -0.539 0.129 0.693 sum -13.369 -3.762 -6.110 15.173 Atomic orbital electron populations 1.21858 0.92788 1.02979 1.02821 1.22485 0.95206 0.92720 0.86923 1.22391 1.02656 0.95845 1.02746 1.86190 1.32225 1.68421 1.36304 1.18404 0.85747 0.90599 1.07290 1.17715 0.82521 0.89951 1.02417 1.91485 1.47924 1.80291 1.91170 1.21054 0.90238 1.01470 1.04286 1.21112 0.98491 0.92456 0.95700 1.19179 0.92133 0.93984 0.99365 1.18313 0.90906 0.94427 0.97836 1.21257 1.01887 0.97917 1.10613 1.22448 0.89765 0.97732 0.93845 1.68743 1.29224 1.11415 1.09877 1.18538 0.89941 0.87979 0.90583 1.19636 1.00271 1.04139 1.21995 0.89711 1.26076 0.99121 0.94503 0.96036 1.70125 1.22831 1.09502 1.30996 0.86320 0.80373 0.79580 0.80541 1.19347 1.20063 1.18484 1.21797 0.97217 1.01961 1.05936 1.17799 0.92098 0.79813 1.00355 1.91527 1.96982 1.32879 1.87733 0.90759 0.91747 0.91478 0.91909 0.91339 0.91384 0.91611 0.83691 0.83324 0.88762 0.86120 0.91491 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.56 37.16 0.36 -1.02 16 2 C 0.08 0.98 3.40 -26.73 -0.09 0.89 16 3 C -0.18 -2.07 9.21 37.16 0.34 -1.72 16 4 O -0.31 -4.80 9.42 -19.78 -0.19 -4.99 16 5 C 0.03 0.40 5.56 -39.19 -0.22 0.18 16 6 C 0.09 1.33 7.31 -39.24 -0.29 1.05 16 7 F -0.13 -1.80 17.10 2.25 0.04 -1.77 16 8 C -0.15 -1.92 10.00 -39.58 -0.40 -2.31 16 9 C -0.06 -0.87 9.54 -39.24 -0.37 -1.24 16 10 C -0.05 -0.81 5.52 -104.84 -0.58 -1.39 16 11 C -0.01 -0.18 5.32 -104.65 -0.56 -0.74 16 12 C -0.29 -6.47 9.01 -38.81 -0.35 -6.82 16 13 C 0.13 3.03 11.17 -17.61 -0.20 2.84 16 14 N -0.48 -12.96 7.85 -11.21 -0.09 -13.05 16 15 C 0.25 6.73 6.55 -85.02 -0.56 6.18 16 16 C -0.43 -11.13 9.14 -37.70 -0.34 -11.48 16 17 H 0.08 2.04 7.85 -52.48 -0.41 1.63 16 18 C 0.07 1.70 5.50 -17.35 -0.10 1.60 16 19 N -0.71 -18.63 11.46 55.55 0.64 -17.99 16 20 Si 0.91 18.11 29.56 -169.99 -5.02 13.09 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 22 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 C -0.25 -5.76 9.36 -38.34 -0.36 -6.12 16 25 C 0.12 2.09 6.98 -38.96 -0.27 1.82 16 26 F -0.11 -2.12 14.03 2.25 0.03 -2.09 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.73 7.91 -51.93 -0.41 0.32 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.88 6.41 -51.93 -0.33 0.55 16 34 H 0.15 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.15 1.97 8.05 -52.49 -0.42 1.55 16 36 H 0.09 1.89 7.88 -52.49 -0.41 1.48 16 37 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 38 H 0.27 6.47 8.29 -40.82 -0.34 6.13 16 39 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -29.00 345.14 -7.88 -36.88 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.51 Total: 3.00 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -3.98 Total: -18.28 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.55 Total: -31.04 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.19 Total: -4.99 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.07 Total: -3.86 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.02 Total: 13.09 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.00 -7.88 -36.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236365136.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.027 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds