Wall clock time and date at job start Tue Mar 31 2020 14:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42906 * 109.46748 * 119.99818 * 2 1 3 5 5 C 1.36012 * 116.99409 * 149.99924 * 4 2 1 6 6 C 1.38929 * 120.01056 * 269.72766 * 5 4 2 7 7 F 1.35096 * 119.90996 * 359.97438 * 6 5 4 8 8 C 1.38471 * 120.17807 * 179.72524 * 6 5 4 9 9 C 1.38011 * 120.20093 * 0.55434 * 8 6 5 10 10 C 1.39378 * 120.01330 * 359.72167 * 9 8 6 11 11 C 1.48322 * 120.08637 * 180.02562 * 10 9 8 12 12 C 1.40072 * 120.82100 * 129.70365 * 11 10 9 13 13 C 1.38478 * 119.42017 * 179.70312 * 12 11 10 14 14 N 1.31496 * 121.14956 * 0.58261 * 13 12 11 15 15 C 1.33665 * 121.79590 * 359.71011 * 14 13 12 16 16 C 1.41430 * 119.77516 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00027 * 179.97438 * 16 15 14 18 18 C 1.40033 * 120.00061 * 359.97438 * 16 15 14 19 19 N 1.30735 * 120.00022 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99936 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47597 * 89.99237 * 20 18 16 22 22 H 1.48506 * 109.46797 * 209.99535 * 20 18 16 23 23 H 1.48504 * 109.47011 * 329.99021 * 20 18 16 24 24 C 1.39348 * 120.82493 * 309.97792 * 11 10 9 25 25 C 1.38611 * 120.01208 * 90.00383 * 5 4 2 26 26 F 1.35099 * 120.09577 * 359.97438 * 25 5 4 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.08003 * 119.89903 * 180.25551 * 8 6 5 35 35 H 1.07999 * 119.99395 * 179.75133 * 9 8 6 36 36 H 1.08001 * 120.28976 * 359.97438 * 12 11 10 37 37 H 1.07993 * 119.43059 * 180.27192 * 13 12 11 38 38 H 0.97005 * 120.00042 * 180.02562 * 19 18 16 39 39 H 1.07994 * 120.58309 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2016 -1.3146 1.0651 6 6 3.2447 -2.6462 0.6712 7 9 2.0981 -3.3030 0.3903 8 6 4.4601 -3.3005 0.5609 9 6 5.6347 -2.6370 0.8525 10 6 5.6006 -1.3027 1.2539 11 6 6.8619 -0.5880 1.5672 12 6 7.1397 0.6609 0.9971 13 6 8.3236 1.3054 1.3146 14 7 9.1965 0.7602 2.1330 15 6 8.9825 -0.4317 2.6989 16 6 9.9510 -0.9785 3.5726 17 1 9.7816 -1.9411 4.0321 18 6 11.1295 -0.2717 3.8419 19 7 11.3348 0.8933 3.2853 20 14 12.4083 -0.9936 4.9964 21 1 13.3716 -1.8131 4.2182 22 1 13.1341 0.1064 5.6810 23 1 11.7358 -1.8477 6.0081 24 6 7.8025 -1.1450 2.4314 25 6 4.3768 -0.6411 1.3597 26 9 4.3372 0.6523 1.7478 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 4.4887 -4.3345 0.2504 35 1 6.5805 -3.1517 0.7693 36 1 6.4348 1.1192 0.3193 37 1 8.5359 2.2703 0.8786 38 1 12.1513 1.3827 3.4715 39 1 7.6269 -2.1078 2.8880 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236365136.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:12 Heat of formation + Delta-G solvation = -90.922265 kcal Electronic energy + Delta-G solvation = -26117.855578 eV Core-core repulsion = 22046.927989 eV Total energy + Delta-G solvation = -4070.927589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.09393 -50.05432 -40.89108 -40.11261 -38.74664 -35.58689 -34.38565 -33.49449 -31.97170 -30.93526 -29.91258 -28.21645 -27.64460 -24.90621 -24.32205 -23.22267 -22.76524 -22.06572 -19.74356 -19.16025 -18.73646 -18.41902 -17.49270 -17.44840 -16.71325 -16.54269 -16.35654 -16.15224 -15.94252 -15.77884 -15.58492 -15.35486 -14.98952 -14.47370 -14.35856 -14.21200 -13.83428 -13.63128 -13.39430 -13.18088 -13.01426 -12.91844 -12.85277 -12.77075 -12.62173 -12.42490 -12.19880 -11.91521 -11.74328 -11.24391 -11.14350 -10.46565 -9.91346 -9.63502 -9.54819 -9.41094 -8.31039 -6.54135 -0.40189 -0.24426 0.86528 0.99941 1.42220 1.53055 1.56818 2.06467 2.23040 2.35504 2.71304 2.83500 3.27271 3.47953 3.65054 3.82491 3.86384 3.91830 4.00866 4.09655 4.17352 4.24041 4.57174 4.58875 4.64857 4.73584 4.76984 4.78748 4.82802 4.85280 4.88851 4.92021 5.12340 5.16263 5.20854 5.23751 5.39074 5.44657 5.59693 5.75538 6.05289 6.24610 6.25129 6.70266 6.91576 8.14934 8.44062 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023388 B = 0.003205 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.891150 B = 8735.487396 C = 9549.717141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 C -0.176 4.176 4 O -0.332 6.332 5 C 0.024 3.976 6 C 0.100 3.900 7 F -0.124 7.124 8 C -0.126 4.126 9 C -0.052 4.052 10 C -0.070 4.070 11 C -0.001 4.001 12 C -0.291 4.291 13 C 0.109 3.891 14 N -0.518 5.518 15 C 0.223 3.777 16 C -0.464 4.464 17 H 0.094 0.906 18 C 0.023 3.977 19 N -0.756 5.756 20 Si 0.988 3.012 21 H -0.261 1.261 22 H -0.271 1.271 23 H -0.254 1.254 24 C -0.259 4.259 25 C 0.102 3.898 26 F -0.129 7.129 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.187 0.813 35 H 0.164 0.836 36 H 0.111 0.889 37 H 0.138 0.862 38 H 0.279 0.721 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.109 -5.839 -7.289 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.019 3.981 3 C -0.234 4.234 4 O -0.250 6.250 5 C -0.022 4.022 6 C 0.080 3.920 7 F -0.103 7.103 8 C -0.144 4.144 9 C -0.070 4.070 10 C -0.071 4.071 11 C -0.007 4.007 12 C -0.314 4.314 13 C -0.055 4.055 14 N -0.232 5.232 15 C 0.098 3.902 16 C -0.495 4.495 17 H 0.112 0.888 18 C -0.199 4.199 19 N -0.378 5.378 20 Si 0.808 3.192 21 H -0.185 1.185 22 H -0.195 1.195 23 H -0.178 1.178 24 C -0.281 4.281 25 C 0.082 3.918 26 F -0.108 7.108 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.205 0.795 35 H 0.181 0.819 36 H 0.130 0.870 37 H 0.155 0.845 38 H 0.090 0.910 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.366 -5.181 -6.943 16.775 hybrid contribution -0.215 0.072 0.214 0.312 sum -14.581 -5.109 -6.728 16.852 Atomic orbital electron populations 1.21874 0.90583 1.03408 1.04029 1.22786 0.96869 0.92458 0.86016 1.22379 1.01131 0.96091 1.03780 1.86167 1.31786 1.68806 1.38196 1.18475 0.85445 0.91282 1.06954 1.17813 0.83249 0.89337 1.01651 1.91507 1.47795 1.79981 1.90988 1.21382 0.88492 1.02847 1.01722 1.21276 1.00022 0.90991 0.94725 1.19067 0.90516 0.95418 1.02129 1.18586 0.91888 0.94103 0.96139 1.21498 1.01354 0.98234 1.10282 1.22826 0.90261 0.98619 0.93793 1.68690 1.30801 1.12349 1.11350 1.18997 0.91410 0.88487 0.91261 1.20025 1.01400 1.05031 1.23073 0.88842 1.27021 1.00906 0.94591 0.97353 1.70231 1.23829 1.11033 1.32719 0.85128 0.77228 0.78752 0.78126 1.18516 1.19534 1.17773 1.21933 0.96993 1.02616 1.06592 1.17942 0.92746 0.79440 1.01689 1.91480 1.97091 1.34012 1.88188 0.88134 0.91684 0.91684 0.91443 0.88682 0.91966 0.93916 0.79538 0.81859 0.87044 0.84476 0.91006 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.56 71.98 0.69 -1.63 16 2 C 0.07 1.64 3.40 30.60 0.10 1.75 16 3 C -0.18 -3.91 9.21 71.98 0.66 -3.24 16 4 O -0.33 -9.77 9.42 -93.69 -0.88 -10.66 16 5 C 0.02 0.73 5.56 22.52 0.13 0.86 16 6 C 0.10 2.54 7.31 22.49 0.16 2.70 16 7 F -0.12 -3.03 17.10 44.97 0.77 -2.26 16 8 C -0.13 -2.70 10.00 22.27 0.22 -2.48 16 9 C -0.05 -1.39 9.54 22.49 0.21 -1.18 16 10 C -0.07 -2.45 5.52 -20.01 -0.11 -2.56 16 11 C 0.00 -0.03 5.32 -19.88 -0.11 -0.14 16 12 C -0.29 -13.02 9.01 22.77 0.21 -12.81 16 13 C 0.11 5.35 11.17 84.80 0.95 6.30 16 14 N -0.52 -29.12 7.85 -189.38 -1.49 -30.61 16 15 C 0.22 12.24 6.55 40.19 0.26 12.50 16 16 C -0.46 -24.74 9.14 23.49 0.21 -24.52 16 17 H 0.09 4.58 7.85 -2.91 -0.02 4.56 16 18 C 0.02 1.16 5.50 85.29 0.47 1.63 16 19 N -0.76 -40.80 11.46 21.84 0.25 -40.55 16 20 Si 0.99 37.50 29.56 68.60 2.03 39.52 16 21 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 22 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 23 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 24 C -0.26 -12.32 9.36 23.08 0.22 -12.11 16 25 C 0.10 3.52 6.98 22.67 0.16 3.68 16 26 F -0.13 -4.95 14.03 44.97 0.63 -4.32 16 27 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.43 7.91 -2.39 -0.02 1.41 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.04 1.14 6.41 -2.39 -0.02 1.12 16 34 H 0.19 2.51 8.06 -2.91 -0.02 2.48 16 35 H 0.16 3.88 8.05 -2.91 -0.02 3.86 16 36 H 0.11 4.51 7.88 -2.91 -0.02 4.49 16 37 H 0.14 6.00 8.06 -2.91 -0.02 5.98 16 38 H 0.28 13.60 8.29 -92.70 -0.77 12.84 16 39 H 0.12 5.09 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -65.56 345.14 6.83 -58.73 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 1.08 Total: 21.41 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 4.44 Total: -31.26 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -1.24 Total: -71.16 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.88 Total: -10.66 kcal Atomic # 9 Polarization: -7.99 SS G_CDS: 1.40 Total: -6.59 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.52 kcal Total: -65.56 6.83 -58.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236365136.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.195 kcal (2) G-P(sol) polarization free energy of solvation -65.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds