Wall clock time and date at job start Tue Mar 31 2020 12:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47100 * 2 1 4 4 C 1.52995 * 109.47143 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47328 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00371 * 96.80598 * 5 4 3 7 7 H 1.07997 * 120.00419 * 172.49624 * 6 5 4 8 8 C 1.38818 * 119.99513 * 352.21954 * 6 5 4 9 9 N 1.31610 * 120.00176 * 333.14390 * 8 6 5 10 10 Si 1.86802 * 119.99770 * 153.14487 * 8 6 5 11 11 H 1.48501 * 109.47174 * 4.99374 * 10 8 6 12 12 H 1.48492 * 109.47153 * 124.99311 * 10 8 6 13 13 H 1.48497 * 109.46924 * 244.99727 * 10 8 6 14 14 C 1.46505 * 120.00061 * 276.80949 * 5 4 3 15 15 C 1.50699 * 109.46912 * 269.99704 * 14 5 4 16 16 C 1.39324 * 119.52516 * 90.00182 * 15 14 5 17 17 C 1.36237 * 121.08011 * 179.97438 * 16 15 14 18 18 C 1.40233 * 119.58581 * 359.97438 * 17 16 15 19 19 N 1.33930 * 122.04290 * 180.02562 * 18 17 16 20 20 C 1.31141 * 120.29642 * 179.97438 * 19 18 17 21 21 N 1.32496 * 122.87458 * 359.97438 * 20 19 18 22 22 C 1.31932 * 121.60149 * 0.02562 * 21 20 19 23 23 Cl 1.73589 * 120.84678 * 180.02562 * 22 21 20 24 24 C 1.40844 * 118.30781 * 0.02562 * 22 21 20 25 25 C 1.36243 * 119.52879 * 269.72478 * 15 14 5 26 26 H 1.09005 * 109.46872 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47092 * 299.99899 * 1 2 3 28 28 H 1.09004 * 109.47474 * 60.00016 * 1 2 3 29 29 H 1.09001 * 109.46603 * 240.00213 * 2 1 3 30 30 H 1.08991 * 109.47224 * 120.00239 * 2 1 3 31 31 H 1.08995 * 109.47222 * 59.99867 * 3 2 1 32 32 H 1.09004 * 109.46943 * 300.00309 * 3 2 1 33 33 H 1.09004 * 109.47432 * 59.99867 * 4 3 2 34 34 H 1.09008 * 109.46919 * 300.00243 * 4 3 2 35 35 H 0.96999 * 119.99974 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.47190 * 29.99620 * 14 5 4 37 37 H 1.09002 * 109.47297 * 149.99585 * 14 5 4 38 38 H 1.07998 * 119.46119 * 359.97438 * 16 15 14 39 39 H 1.08001 * 120.20756 * 180.02562 * 17 16 15 40 40 H 1.08003 * 118.56186 * 180.02562 * 20 19 18 41 41 H 1.08000 * 120.26348 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4196 3.4217 1.1777 7 1 4.8921 4.3928 1.1676 8 6 4.1733 2.7822 2.3849 9 7 3.1812 1.9230 2.4841 10 14 5.2498 3.1412 3.8687 11 1 6.2100 4.2233 3.5335 12 1 4.3976 3.5706 5.0063 13 1 5.9979 1.9151 4.2457 14 6 4.1602 3.5652 -1.2594 15 6 5.5251 3.3493 -1.8605 16 6 5.7291 2.2854 -2.7367 17 6 6.9497 2.0611 -3.2986 18 6 8.0201 2.9138 -2.9923 19 7 9.2401 2.7393 -3.5168 20 6 10.2166 3.5580 -3.2070 21 7 10.0622 4.5809 -2.3792 22 6 8.9009 4.8399 -1.8093 23 17 8.7205 6.1860 -0.7282 24 6 7.8112 3.9964 -2.1003 25 6 6.5406 4.2006 -1.5437 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9285 0.8892 35 1 3.0089 1.4765 3.3277 36 1 3.3976 3.2103 -1.9527 37 1 4.0112 4.6280 -1.0684 38 1 4.9061 1.6277 -2.9743 39 1 7.0919 1.2324 -3.9763 40 1 11.1890 3.3915 -3.6464 41 1 6.3692 5.0241 -0.8664 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237579760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:59 Heat of formation + Delta-G solvation = 75.530340 kcal Electronic energy + Delta-G solvation = -24201.485645 eV Core-core repulsion = 20721.865415 eV Total energy + Delta-G solvation = -3479.620231 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.24739 -38.13056 -36.96277 -36.17287 -33.98640 -33.48617 -32.04972 -31.18221 -30.09619 -28.02293 -26.29720 -24.68903 -24.00929 -22.98709 -22.20485 -20.84398 -19.87525 -18.57471 -17.81920 -17.08790 -16.37166 -15.31619 -15.10633 -14.94889 -14.71027 -14.27496 -13.90328 -13.88292 -13.63958 -13.50623 -13.08862 -12.59924 -12.44290 -12.01393 -11.84578 -11.70389 -11.58890 -11.52947 -11.35128 -11.09828 -10.75325 -10.68107 -10.48368 -10.43780 -10.24751 -10.14650 -10.02388 -9.77912 -9.37642 -9.29993 -9.07974 -8.44109 -8.11501 -7.02273 -5.90091 -3.16181 0.15694 0.75655 1.54259 1.91531 3.03522 3.33723 3.43869 3.45596 4.06128 4.07563 4.18096 4.44929 4.50225 4.75014 5.07794 5.23583 5.30045 5.41932 5.44380 5.54154 5.73037 5.82384 5.87215 5.90734 5.94301 6.14535 6.28719 6.32226 6.34519 6.42491 6.49186 6.62927 6.67712 6.73899 6.82068 6.88136 6.99440 7.08657 7.16325 7.58250 7.69055 7.97898 7.99763 8.22257 9.10883 9.72893 10.16457 11.13502 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.004457 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.310000 B = 6280.373615 C = 7817.391351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C -0.120 4.120 4 C 0.168 3.832 5 N -0.584 5.584 6 C -0.256 4.256 7 H 0.075 0.925 8 C 0.006 3.994 9 N -0.884 5.884 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.289 1.289 14 C 0.179 3.821 15 C -0.073 4.073 16 C -0.053 4.053 17 C -0.114 4.114 18 C 0.159 3.841 19 N -0.501 5.501 20 C 0.296 3.704 21 N -0.528 5.528 22 C 0.260 3.740 23 Cl -0.005 7.005 24 C -0.138 4.138 25 C -0.071 4.071 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.019 0.981 33 H 0.003 0.997 34 H 0.089 0.911 35 H 0.253 0.747 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.200 0.800 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 1.480 -10.382 11.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.159 4.159 4 C 0.043 3.957 5 N -0.303 5.303 6 C -0.384 4.384 7 H 0.093 0.907 8 C -0.192 4.192 9 N -0.528 5.528 10 Si 0.715 3.285 11 H -0.203 1.203 12 H -0.219 1.219 13 H -0.216 1.216 14 C 0.051 3.949 15 C -0.077 4.077 16 C -0.075 4.075 17 C -0.133 4.133 18 C 0.031 3.969 19 N -0.214 5.214 20 C 0.007 3.993 21 N -0.245 5.245 22 C 0.073 3.927 23 Cl 0.024 6.976 24 C -0.144 4.144 25 C -0.093 4.093 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.038 0.962 33 H 0.021 0.979 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.216 0.784 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.247 1.213 -10.594 11.884 hybrid contribution -0.014 0.340 1.416 1.456 sum 5.233 1.553 -9.178 10.678 Atomic orbital electron populations 1.21738 0.97421 0.99921 1.01183 1.21394 0.94340 0.99232 1.00305 1.22108 0.98453 0.94018 1.01317 1.20899 0.92028 0.84233 0.98530 1.44146 1.74242 1.10991 1.00874 1.19244 1.32984 1.02772 0.83383 0.90691 1.24654 0.97664 0.99719 0.97146 1.70170 1.26010 1.31662 1.24938 0.86478 0.81124 0.77770 0.83099 1.20308 1.21941 1.21617 1.19837 0.89241 0.97218 0.88625 1.21162 1.00494 0.93058 0.92974 1.21127 0.96796 0.95910 0.93624 1.20648 0.91034 0.99504 1.02106 1.18843 0.92068 0.93056 0.92923 1.68641 1.00101 1.28224 1.24481 1.24688 0.98446 0.85371 0.90815 1.67639 1.24544 1.21186 1.11093 1.22397 0.89861 0.89513 0.90879 1.98437 1.96801 1.42134 1.60235 1.19204 0.95706 0.97669 1.01801 1.20859 0.90030 1.00310 0.98131 0.94196 0.92887 0.93766 0.94286 0.92262 0.88399 0.96225 0.97865 0.89275 0.93685 0.92824 0.92059 0.84906 0.84379 0.78402 0.84393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 37.16 0.37 -1.84 16 2 C -0.11 -2.00 5.93 -26.73 -0.16 -2.15 16 3 C -0.12 -2.42 5.06 -26.73 -0.14 -2.55 16 4 C 0.17 3.62 4.88 -4.05 -0.02 3.60 16 5 N -0.58 -12.83 2.52 -174.61 -0.44 -13.27 16 6 C -0.26 -6.32 9.68 -15.06 -0.15 -6.46 16 7 H 0.08 1.84 7.96 -52.49 -0.42 1.42 16 8 C 0.01 0.16 4.86 -17.43 -0.08 0.08 16 9 N -0.88 -22.88 8.77 55.49 0.49 -22.40 16 10 Si 0.89 20.75 29.63 -169.99 -5.04 15.71 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.18 3.19 5.78 -5.19 -0.03 3.16 16 15 C -0.07 -1.19 5.43 -104.94 -0.57 -1.76 16 16 C -0.05 -0.77 9.58 -39.90 -0.38 -1.15 16 17 C -0.11 -1.63 10.01 -39.55 -0.40 -2.02 16 18 C 0.16 2.53 6.62 -84.83 -0.56 1.97 16 19 N -0.50 -7.54 10.45 -12.60 -0.13 -7.67 16 20 C 0.30 3.98 12.22 -92.10 -1.13 2.86 16 21 N -0.53 -7.94 10.39 -11.26 -0.12 -8.06 16 22 C 0.26 4.08 7.41 -16.52 -0.12 3.96 16 23 Cl 0.00 -0.07 27.90 -51.86 -1.45 -1.51 16 24 C -0.14 -2.26 5.74 -106.80 -0.61 -2.88 16 25 C -0.07 -1.18 9.09 -39.56 -0.36 -1.54 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.10 2.33 6.42 -51.93 -0.33 2.00 16 32 H 0.02 0.37 8.07 -51.93 -0.42 -0.05 16 33 H 0.00 0.06 8.12 -51.93 -0.42 -0.36 16 34 H 0.09 2.21 5.81 -51.92 -0.30 1.91 16 35 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 36 H 0.05 0.87 7.93 -51.93 -0.41 0.46 16 37 H 0.06 1.08 7.96 -51.93 -0.41 0.66 16 38 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.20 1.83 8.06 -52.48 -0.42 1.41 16 41 H 0.14 2.26 7.14 -52.49 -0.37 1.89 16 LS Contribution 355.82 15.07 5.36 5.36 Total: -1.00 -26.88 355.82 -11.27 -38.15 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.61 Total: 0.44 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -4.34 Total: -6.75 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.20 Total: -51.39 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.04 Total: 15.71 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.45 Total: -1.51 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -26.88 -11.27 -38.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237579760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.682 kcal (2) G-P(sol) polarization free energy of solvation -26.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds