Wall clock time and date at job start Tue Mar 31 2020 12:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47100 * 2 1 4 4 C 1.52995 * 109.47143 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47328 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00371 * 96.80598 * 5 4 3 7 7 H 1.07997 * 120.00419 * 172.49624 * 6 5 4 8 8 C 1.38818 * 119.99513 * 352.21954 * 6 5 4 9 9 N 1.31610 * 120.00176 * 333.14390 * 8 6 5 10 10 Si 1.86802 * 119.99770 * 153.14487 * 8 6 5 11 11 H 1.48501 * 109.47174 * 4.99374 * 10 8 6 12 12 H 1.48492 * 109.47153 * 124.99311 * 10 8 6 13 13 H 1.48497 * 109.46924 * 244.99727 * 10 8 6 14 14 C 1.46505 * 120.00061 * 276.80949 * 5 4 3 15 15 C 1.50699 * 109.46912 * 269.99704 * 14 5 4 16 16 C 1.39324 * 119.52516 * 90.00182 * 15 14 5 17 17 C 1.36237 * 121.08011 * 179.97438 * 16 15 14 18 18 C 1.40233 * 119.58581 * 359.97438 * 17 16 15 19 19 N 1.33930 * 122.04290 * 180.02562 * 18 17 16 20 20 C 1.31141 * 120.29642 * 179.97438 * 19 18 17 21 21 N 1.32496 * 122.87458 * 359.97438 * 20 19 18 22 22 C 1.31932 * 121.60149 * 0.02562 * 21 20 19 23 23 Cl 1.73589 * 120.84678 * 180.02562 * 22 21 20 24 24 C 1.40844 * 118.30781 * 0.02562 * 22 21 20 25 25 C 1.36243 * 119.52879 * 269.72478 * 15 14 5 26 26 H 1.09005 * 109.46872 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47092 * 299.99899 * 1 2 3 28 28 H 1.09004 * 109.47474 * 60.00016 * 1 2 3 29 29 H 1.09001 * 109.46603 * 240.00213 * 2 1 3 30 30 H 1.08991 * 109.47224 * 120.00239 * 2 1 3 31 31 H 1.08995 * 109.47222 * 59.99867 * 3 2 1 32 32 H 1.09004 * 109.46943 * 300.00309 * 3 2 1 33 33 H 1.09004 * 109.47432 * 59.99867 * 4 3 2 34 34 H 1.09008 * 109.46919 * 300.00243 * 4 3 2 35 35 H 0.96999 * 119.99974 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.47190 * 29.99620 * 14 5 4 37 37 H 1.09002 * 109.47297 * 149.99585 * 14 5 4 38 38 H 1.07998 * 119.46119 * 359.97438 * 16 15 14 39 39 H 1.08001 * 120.20756 * 180.02562 * 17 16 15 40 40 H 1.08003 * 118.56186 * 180.02562 * 20 19 18 41 41 H 1.08000 * 120.26348 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4196 3.4217 1.1777 7 1 4.8921 4.3928 1.1676 8 6 4.1733 2.7822 2.3849 9 7 3.1812 1.9230 2.4841 10 14 5.2498 3.1412 3.8687 11 1 6.2100 4.2233 3.5335 12 1 4.3976 3.5706 5.0063 13 1 5.9979 1.9151 4.2457 14 6 4.1602 3.5652 -1.2594 15 6 5.5251 3.3493 -1.8605 16 6 5.7291 2.2854 -2.7367 17 6 6.9497 2.0611 -3.2986 18 6 8.0201 2.9138 -2.9923 19 7 9.2401 2.7393 -3.5168 20 6 10.2166 3.5580 -3.2070 21 7 10.0622 4.5809 -2.3792 22 6 8.9009 4.8399 -1.8093 23 17 8.7205 6.1860 -0.7282 24 6 7.8112 3.9964 -2.1003 25 6 6.5406 4.2006 -1.5437 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9285 0.8892 35 1 3.0089 1.4765 3.3277 36 1 3.3976 3.2103 -1.9527 37 1 4.0112 4.6280 -1.0684 38 1 4.9061 1.6277 -2.9743 39 1 7.0919 1.2324 -3.9763 40 1 11.1890 3.3915 -3.6464 41 1 6.3692 5.0241 -0.8664 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237579760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:58 Heat of formation + Delta-G solvation = 64.730892 kcal Electronic energy + Delta-G solvation = -24201.953945 eV Core-core repulsion = 20721.865415 eV Total energy + Delta-G solvation = -3480.088530 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.41284 -39.41253 -38.13232 -37.71587 -35.26007 -34.85940 -33.62963 -32.43858 -31.51143 -29.50949 -27.77614 -25.90798 -25.53754 -24.31310 -23.44797 -22.34458 -21.43532 -19.72521 -19.04299 -18.67630 -17.76069 -16.96655 -16.38139 -16.18902 -15.85644 -15.84119 -15.28680 -15.24828 -15.07001 -15.00731 -14.42579 -13.81032 -13.69021 -13.43513 -13.29542 -13.10587 -13.00724 -12.89543 -12.72253 -12.68169 -12.30959 -12.27499 -11.88013 -11.81689 -11.71584 -11.67279 -11.61876 -11.35491 -10.96940 -10.54193 -10.28790 -10.25139 -9.34894 -8.77780 -7.79344 -5.05640 -1.01812 -0.42395 0.37313 0.71772 1.43283 1.51126 1.55763 1.86727 2.55554 2.89308 3.02652 3.02950 3.27924 3.33683 3.60769 3.81358 3.92539 4.10611 4.27423 4.38078 4.39926 4.49283 4.59302 4.62894 4.78349 4.84232 4.93740 5.02214 5.08659 5.12794 5.15992 5.17886 5.32511 5.35735 5.53800 5.55667 5.62574 5.63452 5.70748 5.81206 5.94116 6.29252 6.39054 6.83970 7.25733 7.96125 8.34589 9.21741 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.004457 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.310000 B = 6280.373615 C = 7817.391351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C -0.108 4.108 4 C 0.173 3.827 5 N -0.599 5.599 6 C -0.250 4.250 7 H 0.071 0.929 8 C -0.038 4.038 9 N -0.900 5.900 10 Si 0.928 3.072 11 H -0.276 1.276 12 H -0.299 1.299 13 H -0.300 1.300 14 C 0.179 3.821 15 C -0.079 4.079 16 C -0.052 4.052 17 C -0.108 4.108 18 C 0.147 3.853 19 N -0.509 5.509 20 C 0.300 3.700 21 N -0.535 5.535 22 C 0.253 3.747 23 Cl 0.001 6.999 24 C -0.156 4.156 25 C -0.078 4.078 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.029 0.971 33 H 0.025 0.975 34 H 0.053 0.947 35 H 0.244 0.756 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.156 0.844 39 H 0.164 0.836 40 H 0.240 0.760 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.189 0.837 -12.661 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C -0.148 4.148 4 C 0.048 3.952 5 N -0.319 5.319 6 C -0.380 4.380 7 H 0.089 0.911 8 C -0.234 4.234 9 N -0.546 5.546 10 Si 0.758 3.242 11 H -0.201 1.201 12 H -0.226 1.226 13 H -0.227 1.227 14 C 0.053 3.947 15 C -0.083 4.083 16 C -0.074 4.074 17 C -0.126 4.126 18 C 0.019 3.981 19 N -0.222 5.222 20 C 0.012 3.988 21 N -0.252 5.252 22 C 0.066 3.934 23 Cl 0.030 6.970 24 C -0.161 4.161 25 C -0.099 4.099 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.174 0.826 39 H 0.181 0.819 40 H 0.256 0.744 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.986 0.594 -12.915 14.247 hybrid contribution -0.097 0.623 1.973 2.071 sum 5.889 1.217 -10.942 12.486 Atomic orbital electron populations 1.21682 0.95642 1.01322 1.01095 1.21327 0.95908 0.97262 1.00289 1.21899 0.97598 0.95517 0.99750 1.20767 0.92719 0.84009 0.97685 1.44261 1.74952 1.11256 1.01459 1.19387 1.31561 1.02511 0.84549 0.91145 1.25081 0.98793 1.00831 0.98679 1.70304 1.26953 1.32836 1.24503 0.85806 0.79968 0.76952 0.81432 1.20075 1.22630 1.22734 1.19921 0.90642 0.96677 0.87451 1.20997 0.99142 0.93962 0.94177 1.21307 0.97752 0.95433 0.92870 1.20936 0.90329 0.99595 1.01765 1.19194 0.92991 0.93100 0.92794 1.68732 1.00033 1.28689 1.24781 1.25568 0.99598 0.84093 0.89530 1.67757 1.24135 1.21834 1.11465 1.22564 0.90138 0.89658 0.90991 1.98435 1.96821 1.41773 1.60018 1.19297 0.95747 0.98481 1.02597 1.20870 0.90483 1.00459 0.98123 0.92060 0.94345 0.92481 0.92226 0.94257 0.92302 0.95193 0.95676 0.92888 0.94621 0.90818 0.92370 0.82650 0.81856 0.74374 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 9.91 71.98 0.71 -3.32 16 2 C -0.11 -3.70 5.93 30.60 0.18 -3.52 16 3 C -0.11 -4.32 5.06 30.59 0.15 -4.16 16 4 C 0.17 7.38 4.88 86.38 0.42 7.81 16 5 N -0.60 -26.17 2.52 -706.34 -1.78 -27.95 16 6 C -0.25 -12.53 9.68 84.03 0.81 -11.72 16 7 H 0.07 3.50 7.96 -2.91 -0.02 3.48 16 8 C -0.04 -1.98 4.86 84.86 0.41 -1.57 16 9 N -0.90 -48.13 8.77 21.65 0.19 -47.94 16 10 Si 0.93 43.72 29.63 68.60 2.03 45.75 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 13 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 14 C 0.18 6.20 5.78 85.63 0.50 6.69 16 15 C -0.08 -2.50 5.43 -20.07 -0.11 -2.60 16 16 C -0.05 -1.38 9.58 22.06 0.21 -1.17 16 17 C -0.11 -2.77 10.01 22.29 0.22 -2.55 16 18 C 0.15 4.36 6.62 40.20 0.27 4.63 16 19 N -0.51 -13.98 10.45 -193.76 -2.02 -16.00 16 20 C 0.30 7.27 12.22 180.87 2.21 9.48 16 21 N -0.54 -15.08 10.39 -189.53 -1.97 -17.05 16 22 C 0.25 7.66 7.41 85.32 0.63 8.29 16 23 Cl 0.00 0.02 27.90 -2.72 -0.08 -0.05 16 24 C -0.16 -4.91 5.74 -21.28 -0.12 -5.04 16 25 C -0.08 -2.52 9.09 22.28 0.20 -2.32 16 26 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 2.85 6.42 -2.39 -0.02 2.84 16 32 H 0.03 1.10 8.07 -2.39 -0.02 1.08 16 33 H 0.03 0.94 8.12 -2.38 -0.02 0.92 16 34 H 0.05 2.67 5.81 -2.38 -0.01 2.66 16 35 H 0.24 13.02 8.31 -92.71 -0.77 12.25 16 36 H 0.07 2.23 7.93 -2.39 -0.02 2.21 16 37 H 0.06 2.02 7.96 -2.39 -0.02 2.00 16 38 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 39 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 40 H 0.24 3.50 8.06 -2.91 -0.02 3.48 16 41 H 0.13 4.33 7.14 -2.91 -0.02 4.31 16 Total: -1.00 -58.52 355.82 4.11 -54.40 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.03 Total: 9.90 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 6.71 Total: -1.07 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -5.58 Total: -108.93 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.08 Total: -0.05 kcal Total: -58.52 4.11 -54.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237579760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.133 kcal (2) G-P(sol) polarization free energy of solvation -58.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds