Wall clock time and date at job start Tue Mar 31 2020 14:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46766 * 2 1 4 4 O 1.42897 * 109.47027 * 239.99995 * 2 1 3 5 5 C 1.35964 * 116.99734 * 202.92908 * 4 2 1 6 6 C 1.38823 * 120.36621 * 183.13026 * 5 4 2 7 7 N 1.31945 * 121.04208 * 179.97438 * 6 5 4 8 8 C 1.31857 * 121.89936 * 0.03141 * 7 6 5 9 9 F 1.35103 * 119.69275 * 179.97438 * 8 7 6 10 10 C 1.39929 * 120.60776 * 359.97438 * 8 7 6 11 11 C 1.47905 * 120.54249 * 180.02562 * 10 8 7 12 12 C 1.39968 * 119.89745 * 244.99930 * 11 10 8 13 13 C 1.36213 * 120.13975 * 179.97438 * 12 11 10 14 14 C 1.40982 * 119.92784 * 0.02633 * 13 12 11 15 15 C 1.41016 * 120.10009 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00254 * 149.14405 * 15 14 13 17 17 C 1.39987 * 119.99752 * 329.13452 * 15 14 13 18 18 N 1.30813 * 120.00233 * 166.59439 * 17 15 14 19 19 Si 1.86796 * 120.00015 * 346.58975 * 17 15 14 20 20 H 1.48506 * 109.47052 * 92.80190 * 19 17 15 21 21 H 1.48497 * 109.47365 * 212.79979 * 19 17 15 22 22 H 1.48505 * 109.47620 * 332.80316 * 19 17 15 23 23 C 1.40870 * 119.79929 * 359.97438 * 14 13 12 24 24 C 1.36461 * 119.85832 * 359.70535 * 23 14 13 25 25 F 1.35102 * 119.96663 * 180.31202 * 24 23 14 26 26 C 1.38803 * 120.36756 * 2.85559 * 5 4 2 27 27 H 1.08993 * 109.46986 * 60.00044 * 1 2 3 28 28 H 1.08994 * 109.47068 * 299.99558 * 1 2 3 29 29 H 1.08998 * 109.46578 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47259 * 119.99836 * 2 1 3 31 31 H 1.09001 * 109.46800 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47098 * 299.99934 * 3 2 1 33 33 H 1.09004 * 109.46780 * 60.00287 * 3 2 1 34 34 H 1.07995 * 119.47609 * 359.97438 * 6 5 4 35 35 H 1.08000 * 119.92805 * 0.02562 * 12 11 10 36 36 H 1.07996 * 120.03922 * 180.02562 * 13 12 11 37 37 H 0.96991 * 120.00264 * 179.97438 * 18 17 15 38 38 H 1.08007 * 120.07029 * 179.97438 * 23 14 13 39 39 H 1.08007 * 120.86411 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 3.2640 -1.1874 -1.1126 6 6 3.8210 -1.7987 -2.2277 7 7 5.0404 -2.3012 -2.1902 8 6 5.7826 -2.2485 -1.1016 9 9 7.0255 -2.7780 -1.1127 10 6 5.2947 -1.6492 0.0650 11 6 6.1287 -1.5904 1.2851 12 6 5.7351 -2.2871 2.4334 13 6 6.4997 -2.2367 3.5596 14 6 7.6897 -1.4808 3.5687 15 6 8.4837 -1.4257 4.7328 16 1 9.5543 -1.3095 4.6512 17 6 7.8841 -1.5215 5.9941 18 7 8.6207 -1.7341 7.0540 19 14 6.0322 -1.3455 6.1637 20 1 5.3997 -2.6877 6.1016 21 1 5.7128 -0.7076 7.4661 22 1 5.5117 -0.5015 5.0582 23 6 8.0831 -0.7807 2.4113 24 6 7.3142 -0.8423 1.2857 25 9 7.6927 -0.1768 0.1726 26 6 4.0075 -1.1014 0.0564 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5137 0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8901 34 1 3.2471 -1.8638 -3.1402 35 1 4.8237 -2.8665 2.4263 36 1 6.1947 -2.7753 4.4447 37 1 8.2053 -1.8000 7.9280 38 1 8.9938 -0.1999 2.4136 39 1 3.6014 -0.6271 0.9376 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238893281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:51 Heat of formation + Delta-G solvation = -79.506156 kcal Electronic energy + Delta-G solvation = -26347.689895 eV Core-core repulsion = 22277.257346 eV Total energy + Delta-G solvation = -4070.432549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.50787 -48.01704 -40.60185 -38.50383 -37.76853 -34.22476 -33.45410 -32.78668 -30.43294 -29.76997 -29.18324 -27.54119 -25.85315 -23.97112 -22.95480 -21.79736 -21.11186 -20.84229 -18.29927 -17.99807 -17.57877 -17.32660 -16.15265 -15.95641 -15.42036 -15.33570 -15.16010 -14.97677 -14.82842 -14.68379 -14.09011 -13.76511 -13.29135 -13.17870 -13.09170 -13.03884 -12.78216 -12.54273 -12.49470 -12.34868 -12.19462 -12.03161 -11.82948 -11.33388 -11.19595 -10.92580 -10.87192 -10.61761 -10.26790 -10.00455 -9.62774 -9.48965 -9.40777 -8.24827 -7.98831 -7.65089 -7.26957 -4.84299 1.03973 1.22189 2.14976 2.36905 2.89418 2.93783 3.02356 3.09383 3.69663 3.72455 3.87585 4.13325 4.48280 4.60817 4.67532 4.72061 4.90671 4.93338 5.02883 5.22090 5.25833 5.29059 5.46143 5.49086 5.55797 5.73162 5.77408 5.79333 5.92794 6.00452 6.07561 6.15522 6.40936 6.43459 6.59531 6.82837 7.07341 7.10001 7.21369 7.26765 7.52613 7.76386 7.80773 8.00856 8.27568 8.42940 9.73101 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.004511 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.762629 B = 6205.465659 C = 7626.923711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 C -0.181 4.181 4 O -0.304 6.304 5 C 0.072 3.928 6 C 0.087 3.913 7 N -0.477 5.477 8 C 0.268 3.732 9 F -0.107 7.107 10 C -0.017 4.017 11 C -0.251 4.251 12 C -0.022 4.022 13 C -0.249 4.249 14 C 0.117 3.883 15 C -0.420 4.420 16 H 0.098 0.902 17 C 0.080 3.920 18 N -0.789 5.789 19 Si 0.918 3.082 20 H -0.266 1.266 21 H -0.288 1.288 22 H -0.240 1.240 23 C -0.248 4.248 24 C 0.163 3.837 25 F -0.156 7.156 26 C -0.143 4.143 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.168 0.832 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.292 0.708 38 H 0.117 0.883 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.155 3.123 -8.087 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 C -0.239 4.239 4 O -0.217 6.217 5 C 0.024 3.976 6 C -0.071 4.071 7 N -0.191 5.191 8 C 0.114 3.886 9 F -0.086 7.086 10 C -0.021 4.021 11 C -0.254 4.254 12 C -0.040 4.040 13 C -0.268 4.268 14 C 0.114 3.886 15 C -0.447 4.447 16 H 0.116 0.884 17 C -0.142 4.142 18 N -0.410 5.410 19 Si 0.744 3.256 20 H -0.192 1.192 21 H -0.215 1.215 22 H -0.163 1.163 23 C -0.268 4.268 24 C 0.144 3.856 25 F -0.135 7.135 26 C -0.169 4.169 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.185 0.815 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.782 2.711 -8.709 16.527 hybrid contribution -0.516 0.440 1.038 1.240 sum -14.298 3.150 -7.671 16.529 Atomic orbital electron populations 1.21831 0.92199 1.03194 1.03094 1.22508 0.95508 0.92774 0.87576 1.22381 1.02558 0.95764 1.03180 1.86117 1.26738 1.69198 1.39637 1.19968 0.85794 0.96752 0.95057 1.21697 0.90098 0.98106 0.97193 1.66932 1.06029 1.18623 1.27533 1.18331 0.82336 0.97448 0.90451 1.91608 1.36738 1.83703 1.96521 1.19287 0.93830 0.95617 0.93321 1.17591 0.99100 1.14427 0.94248 1.20128 0.97248 0.95303 0.91325 1.20739 1.00318 1.07346 0.98364 1.17543 0.90771 0.87793 0.92542 1.19643 0.97107 1.39169 0.88787 0.88369 1.26326 1.01985 0.90635 0.95241 1.69633 1.39624 1.31095 1.00690 0.86215 0.81107 0.80077 0.78206 1.19206 1.21547 1.16338 1.20640 1.03541 1.08777 0.93826 1.17187 0.93475 0.92797 0.82163 1.91390 1.91237 1.78954 1.51929 1.21863 0.94452 1.02456 0.98131 0.91440 0.90412 0.91596 0.90624 0.91637 0.91387 0.90803 0.81495 0.87784 0.87307 0.89733 0.86522 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.56 37.16 0.36 -0.72 16 2 C 0.07 0.71 2.87 -26.73 -0.08 0.63 16 3 C -0.18 -1.69 9.26 37.16 0.34 -1.35 16 4 O -0.30 -3.67 9.82 -19.63 -0.19 -3.86 16 5 C 0.07 1.00 6.55 -39.16 -0.26 0.75 16 6 C 0.09 1.25 11.13 -17.29 -0.19 1.05 16 7 N -0.48 -8.28 10.35 -13.10 -0.14 -8.41 16 8 C 0.27 5.12 8.19 -16.91 -0.14 4.98 16 9 F -0.11 -2.19 16.70 2.25 0.04 -2.15 16 10 C -0.02 -0.32 5.01 -104.68 -0.52 -0.84 16 11 C -0.25 -5.18 5.07 -104.56 -0.53 -5.71 16 12 C -0.02 -0.44 9.67 -39.66 -0.38 -0.82 16 13 C -0.25 -5.48 6.96 -39.27 -0.27 -5.76 16 14 C 0.12 2.77 5.13 -106.81 -0.55 2.22 16 15 C -0.42 -10.45 9.58 -37.87 -0.36 -10.82 16 16 H 0.10 2.55 8.06 -52.49 -0.42 2.13 16 17 C 0.08 1.91 5.46 -17.33 -0.09 1.82 16 18 N -0.79 -19.23 13.93 55.55 0.77 -18.46 16 19 Si 0.92 18.77 24.41 -169.99 -4.15 14.63 16 20 H -0.27 -5.24 6.65 56.52 0.38 -4.86 16 21 H -0.29 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.24 -4.98 6.72 56.52 0.38 -4.60 16 23 C -0.25 -5.64 9.70 -39.23 -0.38 -6.02 16 24 C 0.16 3.59 7.01 -39.50 -0.28 3.31 16 25 F -0.16 -3.39 16.65 2.25 0.04 -3.35 16 26 C -0.14 -2.20 8.13 -38.75 -0.31 -2.52 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.75 6.07 -51.93 -0.32 0.43 16 31 H 0.06 0.72 7.29 -51.93 -0.38 0.34 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 35 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.11 2.34 4.43 -52.49 -0.23 2.11 16 37 H 0.29 6.38 8.29 -40.82 -0.34 6.04 16 38 H 0.12 2.53 8.06 -52.48 -0.42 2.11 16 39 H 0.15 2.05 5.81 -52.48 -0.30 1.74 16 LS Contribution 336.44 15.07 5.07 5.07 Total: -1.00 -26.44 336.44 -6.43 -32.87 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.22 Total: 3.44 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -3.65 Total: -19.77 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.64 Total: -26.87 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.19 Total: -3.86 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.08 Total: -5.50 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.15 Total: 14.63 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.44 -6.43 -32.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238893281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.636 kcal (2) G-P(sol) polarization free energy of solvation -26.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds