Wall clock time and date at job start Tue Mar 31 2020 14:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46766 * 2 1 4 4 O 1.42897 * 109.47027 * 239.99995 * 2 1 3 5 5 C 1.35964 * 116.99734 * 202.92908 * 4 2 1 6 6 C 1.38823 * 120.36621 * 183.13026 * 5 4 2 7 7 N 1.31945 * 121.04208 * 179.97438 * 6 5 4 8 8 C 1.31857 * 121.89936 * 0.03141 * 7 6 5 9 9 F 1.35103 * 119.69275 * 179.97438 * 8 7 6 10 10 C 1.39929 * 120.60776 * 359.97438 * 8 7 6 11 11 C 1.47905 * 120.54249 * 180.02562 * 10 8 7 12 12 C 1.39968 * 119.89745 * 244.99930 * 11 10 8 13 13 C 1.36213 * 120.13975 * 179.97438 * 12 11 10 14 14 C 1.40982 * 119.92784 * 0.02633 * 13 12 11 15 15 C 1.41016 * 120.10009 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00254 * 149.14405 * 15 14 13 17 17 C 1.39987 * 119.99752 * 329.13452 * 15 14 13 18 18 N 1.30813 * 120.00233 * 166.59439 * 17 15 14 19 19 Si 1.86796 * 120.00015 * 346.58975 * 17 15 14 20 20 H 1.48506 * 109.47052 * 92.80190 * 19 17 15 21 21 H 1.48497 * 109.47365 * 212.79979 * 19 17 15 22 22 H 1.48505 * 109.47620 * 332.80316 * 19 17 15 23 23 C 1.40870 * 119.79929 * 359.97438 * 14 13 12 24 24 C 1.36461 * 119.85832 * 359.70535 * 23 14 13 25 25 F 1.35102 * 119.96663 * 180.31202 * 24 23 14 26 26 C 1.38803 * 120.36756 * 2.85559 * 5 4 2 27 27 H 1.08993 * 109.46986 * 60.00044 * 1 2 3 28 28 H 1.08994 * 109.47068 * 299.99558 * 1 2 3 29 29 H 1.08998 * 109.46578 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47259 * 119.99836 * 2 1 3 31 31 H 1.09001 * 109.46800 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47098 * 299.99934 * 3 2 1 33 33 H 1.09004 * 109.46780 * 60.00287 * 3 2 1 34 34 H 1.07995 * 119.47609 * 359.97438 * 6 5 4 35 35 H 1.08000 * 119.92805 * 0.02562 * 12 11 10 36 36 H 1.07996 * 120.03922 * 180.02562 * 13 12 11 37 37 H 0.96991 * 120.00264 * 179.97438 * 18 17 15 38 38 H 1.08007 * 120.07029 * 179.97438 * 23 14 13 39 39 H 1.08007 * 120.86411 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 3.2640 -1.1874 -1.1126 6 6 3.8210 -1.7987 -2.2277 7 7 5.0404 -2.3012 -2.1902 8 6 5.7826 -2.2485 -1.1016 9 9 7.0255 -2.7780 -1.1127 10 6 5.2947 -1.6492 0.0650 11 6 6.1287 -1.5904 1.2851 12 6 5.7351 -2.2871 2.4334 13 6 6.4997 -2.2367 3.5596 14 6 7.6897 -1.4808 3.5687 15 6 8.4837 -1.4257 4.7328 16 1 9.5543 -1.3095 4.6512 17 6 7.8841 -1.5215 5.9941 18 7 8.6207 -1.7341 7.0540 19 14 6.0322 -1.3455 6.1637 20 1 5.3997 -2.6877 6.1016 21 1 5.7128 -0.7076 7.4661 22 1 5.5117 -0.5015 5.0582 23 6 8.0831 -0.7807 2.4113 24 6 7.3142 -0.8423 1.2857 25 9 7.6927 -0.1768 0.1726 26 6 4.0075 -1.1014 0.0564 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5137 0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8901 34 1 3.2471 -1.8638 -3.1402 35 1 4.8237 -2.8665 2.4263 36 1 6.1947 -2.7753 4.4447 37 1 8.2053 -1.8000 7.9280 38 1 8.9938 -0.1999 2.4136 39 1 3.6014 -0.6271 0.9376 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238893281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:50 Heat of formation + Delta-G solvation = -92.995195 kcal Electronic energy + Delta-G solvation = -26348.274824 eV Core-core repulsion = 22277.257346 eV Total energy + Delta-G solvation = -4071.017478 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.03087 -49.72221 -41.75402 -39.83413 -39.24248 -35.90786 -34.36878 -34.21242 -31.86711 -31.48674 -30.57388 -28.18630 -27.44014 -25.20334 -24.37049 -23.43147 -22.53707 -22.01892 -19.80100 -19.44873 -18.84632 -18.60727 -17.71312 -17.36287 -17.08665 -16.81938 -16.62106 -16.44693 -16.26694 -15.86303 -15.21204 -14.97973 -14.92004 -14.73170 -14.41614 -14.17805 -14.14901 -13.93609 -13.65459 -13.51881 -13.27410 -13.11681 -13.00680 -12.85892 -12.63530 -12.32348 -11.98101 -11.89954 -11.70005 -11.69221 -11.18352 -10.89956 -10.80106 -9.78852 -9.52813 -9.23696 -9.02941 -6.69804 -0.27739 -0.03183 0.47368 0.61481 1.26020 1.40372 1.49734 1.96923 2.07170 2.33108 2.46615 2.62289 3.22826 3.37921 3.47338 3.53700 3.65464 3.84481 3.94728 4.02698 4.14171 4.16999 4.40942 4.42538 4.66211 4.68122 4.70389 4.75006 4.84095 4.85008 4.86131 4.91947 5.10054 5.22561 5.25050 5.29800 5.37883 5.43977 5.54626 5.72261 6.00328 6.12910 6.17059 6.48753 6.55733 6.60040 8.03297 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.004511 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.762629 B = 6205.465659 C = 7626.923711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 C -0.181 4.181 4 O -0.299 6.299 5 C 0.089 3.911 6 C 0.099 3.901 7 N -0.490 5.490 8 C 0.242 3.758 9 F -0.126 7.126 10 C -0.041 4.041 11 C -0.231 4.231 12 C -0.019 4.019 13 C -0.252 4.252 14 C 0.108 3.892 15 C -0.460 4.460 16 H 0.064 0.936 17 C 0.047 3.953 18 N -0.829 5.829 19 Si 0.967 3.033 20 H -0.247 1.247 21 H -0.276 1.276 22 H -0.244 1.244 23 C -0.262 4.262 24 C 0.150 3.850 25 F -0.157 7.157 26 C -0.135 4.135 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.204 0.796 35 H 0.141 0.859 36 H 0.118 0.882 37 H 0.301 0.699 38 H 0.112 0.888 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.595 3.288 -9.305 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.007 3.993 3 C -0.238 4.238 4 O -0.212 6.212 5 C 0.041 3.959 6 C -0.060 4.060 7 N -0.204 5.204 8 C 0.089 3.911 9 F -0.105 7.105 10 C -0.044 4.044 11 C -0.233 4.233 12 C -0.037 4.037 13 C -0.271 4.271 14 C 0.105 3.895 15 C -0.488 4.488 16 H 0.082 0.918 17 C -0.170 4.170 18 N -0.453 5.453 19 Si 0.789 3.211 20 H -0.172 1.172 21 H -0.202 1.202 22 H -0.167 1.167 23 C -0.283 4.283 24 C 0.131 3.869 25 F -0.135 7.135 26 C -0.160 4.160 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.221 0.779 35 H 0.159 0.841 36 H 0.135 0.865 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -18.208 2.874 -9.928 20.937 hybrid contribution 0.686 0.461 1.115 1.388 sum -17.522 3.335 -8.813 19.895 Atomic orbital electron populations 1.21856 0.90055 1.03709 1.04292 1.22849 0.97138 0.92665 0.86670 1.22394 1.01220 0.95785 1.04433 1.86161 1.25259 1.68804 1.40979 1.19930 0.86320 0.95487 0.94210 1.22355 0.89115 0.96037 0.98541 1.66982 1.07116 1.19298 1.26966 1.18460 0.82243 0.99023 0.91346 1.91552 1.38061 1.84236 1.96684 1.19187 0.94991 0.97935 0.92318 1.17909 0.98136 1.11980 0.95280 1.20495 0.98147 0.94807 0.90225 1.20897 0.99773 1.06935 0.99514 1.17633 0.91600 0.88159 0.92126 1.19568 0.95871 1.42905 0.90457 0.91825 1.27013 1.05858 0.89813 0.94356 1.69654 1.41387 1.32851 1.01420 0.85476 0.76295 0.80855 0.78467 1.17199 1.20226 1.16676 1.20737 1.03918 1.09227 0.94378 1.17365 0.94192 0.93424 0.81914 1.91381 1.91343 1.79005 1.51817 1.21981 0.93094 1.01556 0.99410 0.91011 0.88511 0.91436 0.90393 0.93630 0.90855 0.89003 0.77939 0.84107 0.86455 0.88777 0.86940 0.81757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.56 71.98 0.69 -0.79 16 2 C 0.06 0.96 2.87 30.60 0.09 1.05 16 3 C -0.18 -2.74 9.26 71.98 0.67 -2.07 16 4 O -0.30 -5.95 9.82 -93.15 -0.91 -6.86 16 5 C 0.09 2.15 6.55 22.54 0.15 2.29 16 6 C 0.10 2.47 11.13 84.82 0.94 3.41 16 7 N -0.49 -15.94 10.35 -195.36 -2.02 -17.96 16 8 C 0.24 8.94 8.19 85.10 0.70 9.63 16 9 F -0.13 -5.20 16.70 44.97 0.75 -4.45 16 10 C -0.04 -1.43 5.01 -19.90 -0.10 -1.53 16 11 C -0.23 -9.20 5.07 -19.83 -0.10 -9.30 16 12 C -0.02 -0.71 9.67 22.22 0.21 -0.50 16 13 C -0.25 -10.86 6.96 22.47 0.16 -10.70 16 14 C 0.11 5.23 5.13 -21.28 -0.11 5.12 16 15 C -0.46 -24.17 9.58 23.38 0.22 -23.94 16 16 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 17 C 0.05 2.32 5.46 85.27 0.47 2.79 16 18 N -0.83 -41.90 13.93 21.83 0.30 -41.59 16 19 Si 0.97 37.75 24.41 68.60 1.67 39.43 16 20 H -0.25 -8.85 6.65 99.48 0.66 -8.19 16 21 H -0.28 -10.12 7.11 99.48 0.71 -9.41 16 22 H -0.24 -9.54 6.72 99.48 0.67 -8.87 16 23 C -0.26 -12.35 9.70 22.50 0.22 -12.13 16 24 C 0.15 6.64 7.01 22.33 0.16 6.80 16 25 F -0.16 -6.85 16.65 44.97 0.75 -6.10 16 26 C -0.13 -3.71 8.13 22.81 0.19 -3.53 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.10 0.67 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.08 1.20 6.07 -2.39 -0.01 1.19 16 31 H 0.04 0.88 7.29 -2.39 -0.02 0.86 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 34 H 0.20 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 36 H 0.12 4.83 4.43 -2.91 -0.01 4.81 16 37 H 0.30 13.47 8.29 -92.71 -0.77 12.70 16 38 H 0.11 5.21 8.06 -2.91 -0.02 5.19 16 39 H 0.17 3.92 5.81 -2.91 -0.02 3.91 16 Total: -1.00 -59.33 336.44 6.10 -53.23 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 1.02 Total: 17.69 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 4.54 Total: -33.38 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -1.72 Total: -59.55 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.91 Total: -6.86 kcal Atomic # 9 Polarization: -12.06 SS G_CDS: 1.50 Total: -10.56 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 1.67 Total: 39.43 kcal Total: -59.33 6.10 -53.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238893281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.767 kcal (2) G-P(sol) polarization free energy of solvation -59.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds