Wall clock time and date at job start Tue Mar 31 2020 14:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46936 * 2 1 4 4 O 1.42897 * 109.47461 * 239.99805 * 2 1 3 5 5 C 1.35963 * 117.00084 * 204.19588 * 4 2 1 6 6 C 1.38720 * 120.38240 * 183.02023 * 5 4 2 7 7 N 1.31929 * 120.98198 * 179.97438 * 6 5 4 8 8 C 1.31896 * 121.87140 * 0.02562 * 7 6 5 9 9 F 1.35097 * 119.67212 * 179.97438 * 8 7 6 10 10 C 1.39611 * 120.65302 * 0.02562 * 8 7 6 11 11 C 1.48378 * 120.51674 * 180.02562 * 10 8 7 12 12 C 1.39825 * 119.96564 * 129.72781 * 11 10 8 13 13 C 1.38234 * 120.41449 * 179.71533 * 12 11 10 14 14 C 1.38067 * 120.34922 * 0.55464 * 13 12 11 15 15 F 1.35107 * 120.03716 * 179.74240 * 14 13 12 16 16 C 1.41036 * 119.91973 * 359.71658 * 14 13 12 17 17 C 1.41321 * 120.20271 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00330 * 330.50716 * 17 16 14 19 19 C 1.39918 * 119.99567 * 150.51570 * 17 16 14 20 20 N 1.30853 * 120.00149 * 349.48836 * 19 17 16 21 21 Si 1.86800 * 119.99900 * 169.49399 * 19 17 16 22 22 H 1.48505 * 109.47309 * 89.99621 * 21 19 17 23 23 H 1.48498 * 109.47293 * 209.99484 * 21 19 17 24 24 H 1.48497 * 109.47161 * 329.99653 * 21 19 17 25 25 C 1.38677 * 119.96099 * 309.99067 * 11 10 8 26 26 C 1.38925 * 120.38165 * 2.74785 * 5 4 2 27 27 H 1.08999 * 109.46753 * 60.00151 * 1 2 3 28 28 H 1.09000 * 109.47245 * 300.00406 * 1 2 3 29 29 H 1.08995 * 109.46642 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47200 * 119.99224 * 2 1 3 31 31 H 1.09000 * 109.47485 * 59.99741 * 3 2 1 32 32 H 1.08999 * 109.47151 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46542 * 299.99627 * 3 2 1 34 34 H 1.07995 * 119.50874 * 0.03115 * 6 5 4 35 35 H 1.07997 * 119.79173 * 359.97438 * 12 11 10 36 36 H 1.08003 * 119.82204 * 180.27099 * 13 12 11 37 37 H 0.97001 * 119.99749 * 180.02562 * 20 19 17 38 38 H 1.07998 * 120.17674 * 0.02582 * 25 11 10 39 39 H 1.07996 * 120.85315 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0065 -0.6736 -1.1667 5 6 3.2540 -1.2104 -1.1034 6 6 3.8106 -1.8252 -2.2154 7 7 5.0203 -2.3495 -2.1673 8 6 5.7512 -2.3149 -1.0699 9 9 6.9845 -2.8662 -1.0702 10 6 5.2624 -1.7152 0.0922 11 6 6.0874 -1.6775 1.3249 12 6 6.2705 -0.4703 2.0062 13 6 7.0324 -0.4257 3.1587 14 6 7.6310 -1.5713 3.6440 15 9 8.3786 -1.5194 4.7682 16 6 7.4606 -2.7957 2.9652 17 6 8.0701 -3.9721 3.4570 18 1 8.9956 -3.9101 4.0101 19 6 7.4745 -5.2171 3.2271 20 7 6.2608 -5.2823 2.7424 21 14 8.4119 -6.7863 3.6122 22 1 8.1407 -7.1935 5.0144 23 1 7.9729 -7.8642 2.6900 24 1 9.8674 -6.5486 3.4386 25 6 6.6806 -2.8387 1.7970 26 6 3.9883 -1.1446 0.0741 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 -1.0276 0.0005 30 1 1.8934 -0.5137 0.8900 31 1 1.6767 1.9565 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.2456 -1.8745 -3.1345 35 1 5.8103 0.4322 1.6319 36 1 7.1639 0.5112 3.6797 37 1 5.8478 -6.1455 2.5834 38 1 6.5441 -3.7712 1.2695 39 1 3.5824 -0.6679 0.9541 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238897551.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:34 Heat of formation + Delta-G solvation = -82.133799 kcal Electronic energy + Delta-G solvation = -26254.347633 eV Core-core repulsion = 22183.801141 eV Total energy + Delta-G solvation = -4070.546492 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.39375 -47.36463 -40.56757 -38.45064 -37.40160 -34.07774 -33.40908 -32.62048 -30.04480 -29.92237 -28.14824 -27.49092 -25.50795 -24.13094 -23.28027 -21.65702 -20.96230 -20.40781 -18.27222 -17.52030 -17.24545 -17.16763 -16.17838 -15.88322 -15.34987 -15.29210 -14.90500 -14.70748 -14.46408 -14.12431 -14.02981 -13.68170 -13.20561 -13.06806 -12.87935 -12.72774 -12.66316 -12.49500 -12.29415 -12.05299 -11.92596 -11.72860 -11.57164 -11.19696 -11.14109 -11.03212 -10.84645 -10.56178 -10.24509 -9.82715 -9.56996 -9.46394 -9.30301 -8.17734 -7.71713 -7.32042 -6.89103 -4.56386 1.07013 1.28404 2.46488 2.62106 2.99628 3.02519 3.04771 3.09060 3.79327 3.84854 3.95475 4.39334 4.53665 4.66584 4.73192 4.77144 4.97140 4.99902 5.20516 5.31885 5.34539 5.50001 5.52058 5.59387 5.72775 5.78905 5.83676 5.94069 5.98372 6.07529 6.13717 6.27229 6.64999 6.73836 6.87859 7.03947 7.21166 7.28701 7.36007 7.64150 7.79809 7.83983 7.90853 8.33732 8.60626 8.65179 10.04251 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.004119 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.703314 B = 6795.851453 C = 7538.469428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 C -0.179 4.179 4 O -0.303 6.303 5 C 0.071 3.929 6 C 0.088 3.912 7 N -0.477 5.477 8 C 0.272 3.728 9 F -0.104 7.104 10 C -0.032 4.032 11 C -0.069 4.069 12 C -0.193 4.193 13 C -0.125 4.125 14 C -0.016 4.016 15 F -0.160 7.160 16 C 0.083 3.917 17 C -0.450 4.450 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.796 5.796 21 Si 0.917 3.083 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.100 4.100 26 C -0.139 4.139 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.168 0.832 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.284 0.716 38 H 0.133 0.867 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.915 7.576 -5.484 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 C -0.237 4.237 4 O -0.217 6.217 5 C 0.024 3.976 6 C -0.070 4.070 7 N -0.190 5.190 8 C 0.118 3.882 9 F -0.083 7.083 10 C -0.036 4.036 11 C -0.070 4.070 12 C -0.213 4.213 13 C -0.144 4.144 14 C -0.036 4.036 15 F -0.139 7.139 16 C 0.080 3.920 17 C -0.479 4.479 18 H 0.103 0.897 19 C -0.144 4.144 20 N -0.421 5.421 21 Si 0.740 3.260 22 H -0.193 1.193 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.119 4.119 26 C -0.165 4.165 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.185 0.815 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.821 6.980 -6.390 13.639 hybrid contribution 0.379 -0.378 1.338 1.441 sum -9.442 6.602 -5.052 12.580 Atomic orbital electron populations 1.21835 0.92276 1.03257 1.02996 1.22516 0.95511 0.92714 0.87741 1.22362 1.02415 0.95803 1.03106 1.86115 1.27732 1.68545 1.39264 1.19948 0.86024 0.96659 0.94993 1.21678 0.90285 0.97745 0.97280 1.66967 1.06367 1.18219 1.27495 1.18103 0.82669 0.97433 0.89994 1.91637 1.37342 1.82789 1.96492 1.19607 0.94225 0.96018 0.93730 1.18221 1.00284 0.95042 0.93458 1.20089 1.07123 0.95629 0.98437 1.20395 1.00263 0.96145 0.97561 1.18000 1.02710 0.95823 0.87064 1.91289 1.75301 1.97251 1.50085 1.17540 0.92444 0.91160 0.90868 1.19518 1.07993 0.90066 1.30356 0.89717 1.25916 0.94430 1.01342 0.92718 1.69746 1.11900 1.28033 1.32430 0.86157 0.80918 0.79760 0.79119 1.19274 1.19877 1.18237 1.21329 0.98685 0.96393 0.95517 1.21719 0.93996 1.02806 0.97984 0.91495 0.90454 0.91550 0.90447 0.90843 0.91726 0.91457 0.81481 0.88210 0.87629 0.90467 0.84944 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.56 37.16 0.36 -0.79 16 2 C 0.07 0.72 2.87 -26.73 -0.08 0.65 16 3 C -0.18 -1.61 9.29 37.16 0.35 -1.27 16 4 O -0.30 -3.80 9.82 -19.62 -0.19 -3.99 16 5 C 0.07 1.03 6.58 -39.15 -0.26 0.78 16 6 C 0.09 1.31 11.12 -17.33 -0.19 1.12 16 7 N -0.48 -8.57 10.36 -13.20 -0.14 -8.70 16 8 C 0.27 5.41 8.29 -17.01 -0.14 5.27 16 9 F -0.10 -2.23 15.91 2.25 0.04 -2.19 16 10 C -0.03 -0.63 5.48 -104.70 -0.57 -1.20 16 11 C -0.07 -1.51 5.33 -104.97 -0.56 -2.07 16 12 C -0.19 -3.96 9.53 -38.99 -0.37 -4.33 16 13 C -0.12 -2.68 9.99 -39.65 -0.40 -3.08 16 14 C -0.02 -0.39 7.31 -38.58 -0.28 -0.67 16 15 F -0.16 -3.93 16.76 2.25 0.04 -3.89 16 16 C 0.08 2.18 5.55 -106.80 -0.59 1.58 16 17 C -0.45 -11.87 8.75 -37.78 -0.33 -12.20 16 18 H 0.08 2.19 7.77 -52.49 -0.41 1.79 16 19 C 0.07 1.83 5.25 -17.34 -0.09 1.73 16 20 N -0.80 -20.11 10.88 55.55 0.60 -19.50 16 21 Si 0.92 18.62 29.57 -169.99 -5.03 13.59 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 25 C -0.10 -2.49 7.46 -38.56 -0.29 -2.78 16 26 C -0.14 -2.23 7.97 -38.81 -0.31 -2.54 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.82 5.99 -51.93 -0.31 0.51 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.66 7.44 -51.93 -0.39 0.27 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.10 1.75 8.04 -52.49 -0.42 1.33 16 36 H 0.11 1.97 8.06 -52.48 -0.42 1.55 16 37 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 38 H 0.13 3.49 5.98 -52.49 -0.31 3.17 16 39 H 0.15 2.14 5.85 -52.49 -0.31 1.83 16 LS Contribution 341.14 15.07 5.14 5.14 Total: -1.00 -27.91 341.14 -7.54 -35.46 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -4.24 Total: 3.88 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -3.76 Total: -19.79 kcal Atomic # 7 Polarization: -28.67 SS G_CDS: 0.47 Total: -28.20 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.19 Total: -3.99 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.07 Total: -6.09 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.91 -7.54 -35.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238897551.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.678 kcal (2) G-P(sol) polarization free energy of solvation -27.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds