Wall clock time and date at job start Tue Mar 31 2020 14:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35847 * 116.99658 * 180.02562 * 4 3 2 6 6 C 1.38997 * 119.90392 * 359.97438 * 5 4 3 7 7 C 1.37739 * 120.17001 * 179.97438 * 6 5 4 8 8 C 1.39754 * 119.96649 * 0.02562 * 7 6 5 9 9 C 1.47784 * 120.09908 * 180.02562 * 8 7 6 10 10 C 1.40368 * 120.35208 * 129.71998 * 9 8 7 11 11 C 1.36607 * 118.60554 * 179.77354 * 10 9 8 12 12 C 1.40922 * 119.26129 * 0.50533 * 11 10 9 13 13 C 1.40915 * 119.66972 * 179.71385 * 12 11 10 14 14 H 1.07995 * 119.99729 * 0.02704 * 13 12 11 15 15 C 1.40055 * 119.99662 * 180.02562 * 13 12 11 16 16 N 1.30742 * 120.00349 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99760 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47298 * 60.00133 * 17 15 13 19 19 H 1.48501 * 109.46891 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47060 * 299.99863 * 17 15 13 21 21 N 1.33805 * 120.65370 * 359.74205 * 12 11 10 22 22 C 1.31164 * 121.51017 * 359.97438 * 21 12 11 23 23 C 1.39946 * 119.80431 * 0.02562 * 8 7 6 24 24 F 1.35101 * 120.08732 * 180.02562 * 23 8 7 25 25 C 1.38198 * 119.83009 * 359.69821 * 23 8 7 26 26 F 1.35103 * 119.98584 * 180.31787 * 25 23 8 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 31 31 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 32 32 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 33 33 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 34 34 H 1.08005 * 119.91728 * 0.02562 * 6 5 4 35 35 H 1.08003 * 120.01826 * 180.02562 * 7 6 5 36 36 H 1.08005 * 120.70067 * 0.02562 * 10 9 8 37 37 H 1.08002 * 120.36578 * 180.24313 * 11 10 9 38 38 H 0.96995 * 120.00045 * 179.97438 * 16 15 13 39 39 H 1.08001 * 119.66148 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0857 2.6529 -0.0001 6 6 3.3266 3.8173 0.0003 7 6 3.9462 5.0475 0.0013 8 6 5.3415 5.1264 0.0013 9 6 6.0093 6.4447 0.0030 10 6 7.0205 6.7265 0.9350 11 6 7.6170 7.9549 0.9015 12 6 7.1944 8.9000 -0.0547 13 6 7.7997 10.1720 -0.0930 14 1 8.5835 10.4183 0.6079 15 6 7.3847 11.1166 -1.0401 16 7 6.4362 10.8182 -1.8889 17 14 8.1875 12.8026 -1.0914 18 1 9.6420 12.6506 -1.3497 19 1 7.5743 13.6100 -2.1764 20 1 7.9849 13.4871 0.2108 21 7 6.2239 8.6017 -0.9261 22 6 5.6360 7.4291 -0.9226 23 6 6.1045 3.9532 -0.0002 24 9 7.4538 4.0227 0.0003 25 6 5.4743 2.7233 0.0046 26 9 6.2078 1.5887 0.0096 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 2.2483 3.7574 0.0008 35 1 3.3541 5.9507 0.0021 36 1 7.3234 5.9861 1.6607 37 1 8.4008 8.2006 1.6027 38 1 6.1485 11.4726 -2.5446 39 1 4.8556 7.2204 -1.6393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239968330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:36 Heat of formation + Delta-G solvation = -82.533797 kcal Electronic energy + Delta-G solvation = -25343.907124 eV Core-core repulsion = 21273.343287 eV Total energy + Delta-G solvation = -4070.563837 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.02968 -48.09132 -39.97084 -38.44894 -37.10045 -34.27092 -33.78952 -31.43083 -30.67553 -30.15576 -28.65097 -26.93354 -25.40205 -23.11485 -22.72836 -21.88261 -21.28391 -20.59767 -18.48958 -17.69170 -17.11264 -16.94452 -16.64111 -15.97911 -15.80275 -15.65063 -14.86293 -14.70533 -14.59911 -14.34382 -14.17849 -14.12306 -13.83465 -13.24563 -12.90580 -12.61570 -12.53673 -12.31391 -12.20408 -12.10512 -11.75552 -11.55800 -11.35080 -11.23727 -11.16309 -11.09591 -10.91903 -10.71154 -10.55333 -10.10826 -9.53187 -8.59778 -8.48877 -8.22875 -7.72732 -7.37706 -6.59162 -4.68432 1.16316 1.23989 2.57523 2.88275 2.98641 2.99987 3.00582 3.06046 3.68285 3.80122 4.12316 4.53181 4.56762 4.57907 4.74401 4.89492 4.91159 4.97268 5.09869 5.10901 5.31379 5.35522 5.45997 5.61335 5.72918 5.76121 5.86073 5.93253 5.98451 6.11007 6.24070 6.26907 6.50095 6.65623 6.74441 6.82875 6.92386 7.24011 7.29854 7.44003 7.60959 7.87924 8.03415 8.44991 8.74086 9.93506 10.10340 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.026052 B = 0.002655 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.495143 B =10543.662533 C =11345.810831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.058 3.942 4 O -0.310 6.310 5 C 0.093 3.907 6 C -0.185 4.185 7 C -0.072 4.072 8 C -0.010 4.010 9 C -0.286 4.286 10 C -0.026 4.026 11 C -0.271 4.271 12 C 0.254 3.746 13 C -0.409 4.409 14 H 0.087 0.913 15 C 0.063 3.937 16 N -0.701 5.701 17 Si 0.912 3.088 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.263 1.263 21 N -0.488 5.488 22 C 0.162 3.838 23 C 0.088 3.912 24 F -0.120 7.120 25 C 0.036 3.964 26 F -0.130 7.130 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.277 0.723 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.108 -12.657 2.134 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.224 6.224 5 C 0.047 3.953 6 C -0.204 4.204 7 C -0.091 4.091 8 C -0.012 4.012 9 C -0.292 4.292 10 C -0.049 4.049 11 C -0.293 4.293 12 C 0.131 3.869 13 C -0.438 4.438 14 H 0.106 0.894 15 C -0.164 4.164 16 N -0.321 5.321 17 Si 0.736 3.264 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.187 1.187 21 N -0.199 5.199 22 C -0.007 4.007 23 C 0.068 3.932 24 F -0.098 7.098 25 C 0.015 3.985 26 F -0.109 7.109 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.268 -12.094 1.361 15.923 hybrid contribution 0.818 -0.085 0.597 1.016 sum -9.450 -12.179 1.958 15.539 Atomic orbital electron populations 1.21690 0.94203 1.02486 1.02294 1.21482 0.95987 0.94878 1.03795 1.22914 0.78244 0.98860 1.01689 1.86033 1.21354 1.25946 1.89050 1.18525 0.89620 0.85496 1.01651 1.21052 1.00023 0.91259 1.08024 1.21090 0.93046 0.97262 0.97696 1.18769 0.92344 0.91705 0.98426 1.18731 1.08403 0.94132 1.07931 1.20562 0.93231 0.95624 0.95500 1.21392 1.06320 0.96069 1.05553 1.18647 0.88622 0.92543 0.87098 1.19721 1.15675 0.95629 1.12804 0.89445 1.26188 0.94632 1.00888 0.94679 1.70116 1.18160 1.33899 1.09888 0.86301 0.80356 0.80684 0.79103 1.18703 1.19993 1.18706 1.68803 1.10361 1.16539 1.24226 1.22690 0.95603 0.88851 0.93534 1.17559 0.77910 0.91722 1.06046 1.91511 1.27735 1.96882 1.93720 1.16701 0.86658 0.81587 1.13516 1.91472 1.76618 1.48165 1.94631 0.91774 0.92315 0.92283 0.90790 0.90815 0.91767 0.91807 0.84512 0.84161 0.88657 0.88045 0.91115 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.94 6.30 -26.73 -0.17 -1.11 16 3 C 0.06 0.54 4.74 37.16 0.18 0.72 16 4 O -0.31 -4.22 9.99 -19.26 -0.19 -4.41 16 5 C 0.09 1.39 6.70 -39.00 -0.26 1.13 16 6 C -0.18 -2.43 9.01 -39.48 -0.36 -2.78 16 7 C -0.07 -1.10 9.52 -39.20 -0.37 -1.47 16 8 C -0.01 -0.19 5.50 -104.79 -0.58 -0.77 16 9 C -0.29 -6.21 5.34 -104.46 -0.56 -6.77 16 10 C -0.03 -0.58 8.94 -39.37 -0.35 -0.93 16 11 C -0.27 -6.51 9.76 -39.16 -0.38 -6.89 16 12 C 0.25 6.70 6.55 -84.98 -0.56 6.14 16 13 C -0.41 -10.44 9.11 -37.89 -0.35 -10.78 16 14 H 0.09 2.06 7.85 -52.49 -0.41 1.65 16 15 C 0.06 1.54 5.50 -17.33 -0.10 1.44 16 16 N -0.70 -17.75 11.44 55.55 0.64 -17.12 16 17 Si 0.91 17.62 29.56 -169.99 -5.02 12.59 16 18 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 19 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 21 N -0.49 -12.90 7.83 -10.83 -0.08 -12.99 16 22 C 0.16 3.76 10.69 -17.11 -0.18 3.58 16 23 C 0.09 1.65 7.19 -38.96 -0.28 1.37 16 24 F -0.12 -2.43 15.87 2.25 0.04 -2.40 16 25 C 0.04 0.63 7.31 -39.30 -0.29 0.34 16 26 F -0.13 -2.34 17.01 2.25 0.04 -2.30 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 33 H 0.06 0.52 7.65 -51.93 -0.40 0.13 16 34 H 0.14 1.34 6.27 -52.48 -0.33 1.01 16 35 H 0.14 1.93 8.05 -52.48 -0.42 1.50 16 36 H 0.10 1.96 7.87 -52.48 -0.41 1.55 16 37 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 39 H 0.12 2.49 8.04 -52.49 -0.42 2.07 16 LS Contribution 345.53 15.07 5.21 5.21 Total: -1.00 -28.77 345.53 -8.08 -36.84 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.46 Total: 1.82 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -4.23 Total: -17.25 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: 0.55 Total: -30.11 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.19 Total: -4.41 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.07 Total: -4.70 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.02 Total: 12.59 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.77 -8.08 -36.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239968330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.689 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds