Wall clock time and date at job start Tue Mar 31 2020 14:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35847 * 116.99658 * 180.02562 * 4 3 2 6 6 C 1.38997 * 119.90392 * 359.97438 * 5 4 3 7 7 C 1.37739 * 120.17001 * 179.97438 * 6 5 4 8 8 C 1.39754 * 119.96649 * 0.02562 * 7 6 5 9 9 C 1.47784 * 120.09908 * 180.02562 * 8 7 6 10 10 C 1.40368 * 120.35208 * 129.71998 * 9 8 7 11 11 C 1.36607 * 118.60554 * 179.77354 * 10 9 8 12 12 C 1.40922 * 119.26129 * 0.50533 * 11 10 9 13 13 C 1.40915 * 119.66972 * 179.71385 * 12 11 10 14 14 H 1.07995 * 119.99729 * 0.02704 * 13 12 11 15 15 C 1.40055 * 119.99662 * 180.02562 * 13 12 11 16 16 N 1.30742 * 120.00349 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99760 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47298 * 60.00133 * 17 15 13 19 19 H 1.48501 * 109.46891 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47060 * 299.99863 * 17 15 13 21 21 N 1.33805 * 120.65370 * 359.74205 * 12 11 10 22 22 C 1.31164 * 121.51017 * 359.97438 * 21 12 11 23 23 C 1.39946 * 119.80431 * 0.02562 * 8 7 6 24 24 F 1.35101 * 120.08732 * 180.02562 * 23 8 7 25 25 C 1.38198 * 119.83009 * 359.69821 * 23 8 7 26 26 F 1.35103 * 119.98584 * 180.31787 * 25 23 8 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 31 31 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 32 32 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 33 33 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 34 34 H 1.08005 * 119.91728 * 0.02562 * 6 5 4 35 35 H 1.08003 * 120.01826 * 180.02562 * 7 6 5 36 36 H 1.08005 * 120.70067 * 0.02562 * 10 9 8 37 37 H 1.08002 * 120.36578 * 180.24313 * 11 10 9 38 38 H 0.96995 * 120.00045 * 179.97438 * 16 15 13 39 39 H 1.08001 * 119.66148 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0857 2.6529 -0.0001 6 6 3.3266 3.8173 0.0003 7 6 3.9462 5.0475 0.0013 8 6 5.3415 5.1264 0.0013 9 6 6.0093 6.4447 0.0030 10 6 7.0205 6.7265 0.9350 11 6 7.6170 7.9549 0.9015 12 6 7.1944 8.9000 -0.0547 13 6 7.7997 10.1720 -0.0930 14 1 8.5835 10.4183 0.6079 15 6 7.3847 11.1166 -1.0401 16 7 6.4362 10.8182 -1.8889 17 14 8.1875 12.8026 -1.0914 18 1 9.6420 12.6506 -1.3497 19 1 7.5743 13.6100 -2.1764 20 1 7.9849 13.4871 0.2108 21 7 6.2239 8.6017 -0.9261 22 6 5.6360 7.4291 -0.9226 23 6 6.1045 3.9532 -0.0002 24 9 7.4538 4.0227 0.0003 25 6 5.4743 2.7233 0.0046 26 9 6.2078 1.5887 0.0096 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 2.2483 3.7574 0.0008 35 1 3.3541 5.9507 0.0021 36 1 7.3234 5.9861 1.6607 37 1 8.4008 8.2006 1.6027 38 1 6.1485 11.4726 -2.5446 39 1 4.8556 7.2204 -1.6393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239968330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:35 Heat of formation + Delta-G solvation = -96.383800 kcal Electronic energy + Delta-G solvation = -25344.507706 eV Core-core repulsion = 21273.343287 eV Total energy + Delta-G solvation = -4071.164418 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.45537 -49.53412 -41.12903 -40.13372 -38.39789 -35.66402 -34.82639 -33.03771 -32.44535 -31.45576 -30.16938 -27.90106 -26.87613 -24.43327 -24.08747 -23.45339 -22.43536 -21.97724 -19.66323 -19.49539 -18.47093 -18.26782 -17.70042 -17.52150 -17.17587 -16.93499 -16.31348 -16.10853 -16.01052 -15.84122 -15.65317 -15.29544 -14.91861 -14.55647 -14.24886 -14.07425 -13.89382 -13.75423 -13.26217 -13.09043 -12.88460 -12.82855 -12.80306 -12.67667 -12.61741 -12.24315 -12.11812 -11.86499 -11.79325 -11.52618 -11.22511 -10.28382 -9.91500 -9.80991 -9.57015 -8.94772 -8.36849 -6.55374 -0.14422 -0.08038 0.86128 1.16460 1.41076 1.53582 1.54108 1.86141 2.20271 2.36210 2.76720 2.92042 3.39960 3.62746 3.71163 3.87912 3.98032 4.02349 4.04619 4.07700 4.18329 4.31886 4.35329 4.55985 4.58941 4.75934 4.79899 4.81748 4.86596 4.95471 5.04035 5.13219 5.15620 5.21043 5.26313 5.36274 5.44821 5.52511 5.65688 5.83101 6.06628 6.19937 6.23650 6.63110 6.88235 8.10687 8.35424 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.026052 B = 0.002655 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.495143 B =10543.662533 C =11345.810831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.045 3.955 4 O -0.323 6.323 5 C 0.112 3.888 6 C -0.164 4.164 7 C -0.056 4.056 8 C -0.039 4.039 9 C -0.269 4.269 10 C -0.033 4.033 11 C -0.289 4.289 12 C 0.223 3.777 13 C -0.448 4.448 14 H 0.093 0.907 15 C 0.021 3.979 16 N -0.742 5.742 17 Si 0.990 3.010 18 H -0.260 1.260 19 H -0.266 1.266 20 H -0.256 1.256 21 N -0.519 5.519 22 C 0.145 3.855 23 C 0.074 3.926 24 F -0.138 7.138 25 C 0.015 3.985 26 F -0.139 7.139 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.183 0.817 35 H 0.160 0.840 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.284 0.716 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.565 -13.459 2.288 18.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.029 4.029 4 O -0.237 6.237 5 C 0.065 3.935 6 C -0.183 4.183 7 C -0.074 4.074 8 C -0.041 4.041 9 C -0.274 4.274 10 C -0.057 4.057 11 C -0.311 4.311 12 C 0.100 3.900 13 C -0.478 4.478 14 H 0.111 0.889 15 C -0.202 4.202 16 N -0.362 5.362 17 Si 0.810 3.190 18 H -0.184 1.184 19 H -0.190 1.190 20 H -0.180 1.180 21 N -0.231 5.231 22 C -0.022 4.022 23 C 0.054 3.946 24 F -0.117 7.117 25 C -0.006 4.006 26 F -0.118 7.118 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.200 0.800 35 H 0.177 0.823 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.095 0.905 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.753 -12.945 1.519 18.235 hybrid contribution 1.382 -0.206 0.586 1.515 sum -11.370 -13.151 2.105 17.512 Atomic orbital electron populations 1.21678 0.92430 1.03223 1.02950 1.21513 0.97356 0.93831 1.03351 1.23357 0.75701 1.00429 1.03403 1.86062 1.24039 1.25273 1.88346 1.18645 0.88841 0.86784 0.99182 1.21428 1.01981 0.89405 1.05457 1.21308 0.91499 0.98993 0.95592 1.18674 0.93812 0.89920 1.01707 1.18958 1.07174 0.95153 1.06127 1.20825 0.93423 0.95359 0.96045 1.21552 1.07155 0.96580 1.05797 1.19058 0.89341 0.93639 0.87991 1.20051 1.16914 0.96432 1.14388 0.88890 1.27083 0.94855 1.04616 0.93667 1.70196 1.19686 1.35556 1.10790 0.85139 0.79123 0.75369 0.79401 1.18394 1.19002 1.18039 1.68750 1.11134 1.18273 1.24963 1.23091 0.96164 0.88624 0.94362 1.17736 0.77255 0.92561 1.07060 1.91459 1.29134 1.97027 1.94043 1.16866 0.87805 0.80852 1.15085 1.91442 1.77084 1.48414 1.94850 0.91113 0.91617 0.91635 0.91345 0.91308 0.89976 0.89944 0.80021 0.82276 0.87166 0.87180 0.90533 0.83912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 71.98 0.71 -0.41 16 2 C -0.12 -1.49 6.30 30.59 0.19 -1.30 16 3 C 0.04 0.65 4.74 71.98 0.34 0.99 16 4 O -0.32 -7.79 9.99 -91.83 -0.92 -8.70 16 5 C 0.11 3.03 6.70 22.65 0.15 3.18 16 6 C -0.16 -3.60 9.01 22.33 0.20 -3.39 16 7 C -0.06 -1.51 9.52 22.52 0.21 -1.30 16 8 C -0.04 -1.40 5.50 -19.97 -0.11 -1.51 16 9 C -0.27 -11.69 5.34 -19.76 -0.11 -11.80 16 10 C -0.03 -1.51 8.94 22.41 0.20 -1.31 16 11 C -0.29 -14.36 9.76 22.55 0.22 -14.14 16 12 C 0.22 12.24 6.55 40.16 0.26 12.51 16 13 C -0.45 -23.75 9.11 23.37 0.21 -23.54 16 14 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 15 C 0.02 1.05 5.50 85.30 0.47 1.52 16 16 N -0.74 -38.61 11.44 21.84 0.25 -38.36 16 17 Si 0.99 36.59 29.56 68.60 2.03 38.61 16 18 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 19 H -0.27 -9.28 7.11 99.48 0.71 -8.57 16 20 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 21 N -0.52 -28.31 7.83 -188.17 -1.47 -29.78 16 22 C 0.14 6.78 10.69 85.27 0.91 7.69 16 23 C 0.07 2.75 7.19 22.67 0.16 2.92 16 24 F -0.14 -5.71 15.87 44.97 0.71 -5.00 16 25 C 0.01 0.49 7.31 22.45 0.16 0.65 16 26 F -0.14 -4.95 17.01 44.97 0.77 -4.19 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 0.93 7.65 -2.39 -0.02 0.92 16 33 H 0.08 0.93 7.65 -2.39 -0.02 0.91 16 34 H 0.18 2.39 6.27 -2.91 -0.02 2.37 16 35 H 0.16 3.76 8.05 -2.91 -0.02 3.74 16 36 H 0.11 4.60 7.87 -2.91 -0.02 4.58 16 37 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 38 H 0.28 13.24 8.29 -92.71 -0.77 12.47 16 39 H 0.14 5.82 8.04 -2.91 -0.02 5.80 16 Total: -1.00 -65.50 345.53 6.65 -58.85 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 1.08 Total: 17.81 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 4.20 Total: -29.24 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -1.22 Total: -68.14 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.92 Total: -8.70 kcal Atomic # 9 Polarization: -10.66 SS G_CDS: 1.48 Total: -9.18 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.61 kcal Total: -65.50 6.65 -58.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239968330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.536 kcal (2) G-P(sol) polarization free energy of solvation -65.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds