Wall clock time and date at job start Tue Mar 31 2020 14:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46796 * 2 1 4 4 O 1.42903 * 109.46628 * 180.02562 * 3 2 1 5 5 C 1.35901 * 116.99632 * 179.97438 * 4 3 2 6 6 C 1.38544 * 120.09377 * 359.97438 * 5 4 3 7 7 C 1.38194 * 120.09030 * 179.70482 * 6 5 4 8 8 C 1.38575 * 120.27973 * 0.27468 * 7 6 5 9 9 F 1.35095 * 119.91009 * 180.02562 * 8 7 6 10 10 C 1.38203 * 120.18434 * 0.02562 * 8 7 6 11 11 C 1.39312 * 119.90589 * 359.97438 * 10 8 7 12 12 C 1.48326 * 120.13861 * 180.02562 * 11 10 8 13 13 C 1.39025 * 120.42039 * 64.72506 * 12 11 10 14 14 C 1.40946 * 118.12503 * 179.72344 * 13 12 11 15 15 C 1.41382 * 120.56891 * 180.27812 * 14 13 12 16 16 H 1.08002 * 119.99658 * 203.72448 * 15 14 13 17 17 C 1.39892 * 120.00326 * 23.73102 * 15 14 13 18 18 N 1.30869 * 119.99616 * 17.41890 * 17 15 14 19 19 Si 1.86796 * 119.99990 * 197.42263 * 17 15 14 20 20 H 1.48497 * 109.47182 * 59.99906 * 19 17 15 21 21 H 1.48503 * 109.46751 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47156 * 299.99254 * 19 17 15 23 23 C 1.40799 * 118.85788 * 0.55059 * 14 13 12 24 24 N 1.31509 * 120.70381 * 359.70635 * 23 14 13 25 25 C 1.32154 * 122.07533 * 0.02562 * 24 23 14 26 26 F 1.35099 * 119.45974 * 179.97438 * 25 24 23 27 27 H 1.08998 * 109.47087 * 300.00294 * 1 2 3 28 28 H 1.08998 * 109.46786 * 60.00271 * 1 2 3 29 29 H 1.08997 * 109.46696 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47575 * 239.99844 * 2 1 3 31 31 H 1.09007 * 109.47188 * 119.99327 * 2 1 3 32 32 H 1.08990 * 109.47648 * 59.99686 * 3 2 1 33 33 H 1.09000 * 109.46678 * 299.98946 * 3 2 1 34 34 H 1.08001 * 119.95610 * 359.97294 * 6 5 4 35 35 H 1.07997 * 119.86312 * 180.25370 * 7 6 5 36 36 H 1.08003 * 120.04772 * 179.97438 * 10 8 7 37 37 H 1.08001 * 120.93319 * 359.97159 * 13 12 11 38 38 H 0.96997 * 119.99737 * 179.97438 * 18 17 15 39 39 H 1.08004 * 119.65245 * 179.73261 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0859 2.6534 -0.0012 6 6 3.3332 3.8166 -0.0018 7 6 3.9606 5.0479 0.0037 8 6 5.3441 5.1271 0.0041 9 9 5.9497 6.3347 0.0101 10 6 6.1062 3.9742 -0.0015 11 6 5.4817 2.7289 -0.0071 12 6 6.2945 1.4882 -0.0126 13 6 7.1084 1.1750 1.0701 14 6 7.8555 -0.0190 1.0163 15 6 8.6953 -0.3907 2.0912 16 1 9.5286 -1.0561 1.9202 17 6 8.4469 0.1032 3.3762 18 7 7.2782 0.6164 3.6653 19 14 9.7833 0.0304 4.6793 20 1 10.9651 0.8034 4.2201 21 1 9.2721 0.6140 5.9456 22 1 10.1750 -1.3837 4.9081 23 6 7.7555 -0.8321 -0.1288 24 7 6.9748 -0.4890 -1.1299 25 6 6.2563 0.6200 -1.1114 26 9 5.4722 0.9214 -2.1695 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 1.6766 1.9564 0.8898 33 1 1.6767 1.9563 -0.8901 34 1 2.2546 3.7609 -0.0022 35 1 3.3703 5.9522 0.0074 36 1 7.1843 4.0385 -0.0016 37 1 7.1635 1.8263 1.9299 38 1 7.1058 0.9585 4.5564 39 1 8.3256 -1.7477 -0.1854 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243403520.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:52 Heat of formation + Delta-G solvation = -89.193297 kcal Electronic energy + Delta-G solvation = -26448.331341 eV Core-core repulsion = 22377.478726 eV Total energy + Delta-G solvation = -4070.852615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.57570 -47.48449 -39.94380 -38.23930 -37.06380 -34.17249 -33.83558 -32.56676 -30.37303 -29.59264 -28.42619 -26.43858 -25.50868 -23.57484 -22.27628 -21.87213 -21.26319 -20.60305 -18.08788 -17.55760 -16.76032 -16.50354 -16.46574 -16.19142 -15.80167 -15.26870 -15.03694 -14.60599 -14.51598 -14.35505 -13.98231 -13.78548 -13.25171 -13.05689 -12.90587 -12.39515 -12.34681 -12.11862 -12.04947 -12.03139 -11.95658 -11.73226 -11.34126 -11.22639 -11.17763 -11.10027 -10.74806 -10.67759 -10.43013 -10.12215 -9.47024 -8.98972 -8.44818 -8.29524 -7.80344 -7.48594 -7.00282 -4.60548 1.31712 1.48652 2.35241 2.68625 2.95850 2.97276 3.05454 3.37639 3.75362 3.81052 4.36175 4.50620 4.79083 4.88991 4.92277 5.00177 5.15318 5.18955 5.27051 5.33803 5.36426 5.39467 5.50149 5.61436 5.83106 5.90939 5.97272 6.06719 6.19608 6.22358 6.29044 6.31149 6.49636 6.53219 6.79342 6.91797 6.96215 6.98084 7.46279 7.63286 7.66651 7.78945 8.22436 8.49251 8.49996 9.24644 9.91399 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.009707 B = 0.004966 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.767054 B = 5636.701177 C = 6644.387497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.058 3.942 4 O -0.291 6.291 5 C 0.141 3.859 6 C -0.188 4.188 7 C -0.121 4.121 8 C 0.055 3.945 9 F -0.146 7.146 10 C -0.102 4.102 11 C -0.017 4.017 12 C -0.095 4.095 13 C -0.095 4.095 14 C 0.055 3.945 15 C -0.442 4.442 16 H 0.087 0.913 17 C 0.074 3.926 18 N -0.784 5.784 19 Si 0.915 3.085 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.262 1.262 23 C 0.011 3.989 24 N -0.491 5.491 25 C 0.179 3.821 26 F -0.144 7.144 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.287 0.713 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.936 5.105 -1.244 10.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.017 4.017 4 O -0.204 6.204 5 C 0.095 3.905 6 C -0.206 4.206 7 C -0.140 4.140 8 C 0.036 3.964 9 F -0.125 7.125 10 C -0.121 4.121 11 C -0.018 4.018 12 C -0.099 4.099 13 C -0.120 4.120 14 C 0.051 3.949 15 C -0.471 4.471 16 H 0.106 0.894 17 C -0.146 4.146 18 N -0.408 5.408 19 Si 0.738 3.262 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.150 4.150 24 N -0.203 5.203 25 C 0.025 3.975 26 F -0.124 7.124 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.098 0.902 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.082 4.531 -1.807 10.309 hybrid contribution 0.266 0.949 1.254 1.595 sum -8.816 5.480 -0.553 10.395 Atomic orbital electron populations 1.21674 0.94542 1.02321 1.01854 1.21471 0.95542 0.95041 1.04226 1.22853 0.79182 0.98859 1.00849 1.86251 1.20421 1.26002 1.87723 1.19001 0.91407 0.84436 0.95675 1.20918 0.99966 0.91272 1.08485 1.20782 0.92541 0.98308 1.02394 1.17380 0.90825 0.80224 1.08016 1.91454 1.83779 1.42662 1.94563 1.21052 1.00768 0.89636 1.00623 1.17888 0.89495 0.92935 1.01515 1.18832 1.01016 0.94199 0.95831 1.21699 0.96995 0.97083 0.96236 1.18444 0.92220 0.90826 0.93454 1.19515 1.11194 1.24905 0.91493 0.89446 1.26007 0.95811 0.92695 1.00117 1.69784 1.20510 1.27900 1.22575 0.86239 0.81196 0.79954 0.78763 1.18526 1.20145 1.18676 1.22286 1.01337 1.00104 0.91294 1.66285 1.07228 1.15843 1.30905 1.17442 0.99239 0.95135 0.85668 1.91397 1.72569 1.92541 1.55906 0.92545 0.92566 0.91863 0.90619 0.90609 0.92291 0.92306 0.84806 0.84963 0.84061 0.84422 0.90205 0.84472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.56 6.30 -26.73 -0.17 -1.73 16 3 C 0.06 0.79 4.74 37.16 0.18 0.96 16 4 O -0.29 -5.50 9.37 -19.43 -0.18 -5.68 16 5 C 0.14 2.62 6.51 -38.89 -0.25 2.37 16 6 C -0.19 -2.79 9.03 -39.48 -0.36 -3.15 16 7 C -0.12 -1.74 10.01 -39.47 -0.40 -2.14 16 8 C 0.05 0.90 7.29 -39.47 -0.29 0.61 16 9 F -0.15 -2.33 17.26 2.25 0.04 -2.29 16 10 C -0.10 -1.87 9.71 -39.20 -0.38 -2.25 16 11 C -0.02 -0.34 5.03 -104.77 -0.53 -0.87 16 12 C -0.10 -2.24 4.94 -104.76 -0.52 -2.76 16 13 C -0.09 -2.34 8.50 -38.26 -0.33 -2.66 16 14 C 0.06 1.38 5.59 -106.71 -0.60 0.78 16 15 C -0.44 -10.67 9.08 -37.77 -0.34 -11.01 16 16 H 0.09 1.98 7.90 -52.49 -0.41 1.56 16 17 C 0.07 1.69 5.18 -17.34 -0.09 1.60 16 18 N -0.78 -18.76 10.92 55.54 0.61 -18.16 16 19 Si 0.91 17.17 29.59 -169.99 -5.03 12.14 16 20 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 21 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 23 C 0.01 0.26 10.96 -16.72 -0.18 0.08 16 24 N -0.49 -12.39 10.33 -12.58 -0.13 -12.52 16 25 C 0.18 4.44 8.12 -16.72 -0.14 4.30 16 26 F -0.14 -3.46 16.70 2.25 0.04 -3.43 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.06 0.70 7.66 -51.93 -0.40 0.31 16 33 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 34 H 0.13 1.56 6.29 -52.49 -0.33 1.23 16 35 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.14 2.48 8.06 -52.48 -0.42 2.06 16 37 H 0.14 3.44 6.20 -52.49 -0.33 3.12 16 38 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 39 H 0.14 3.00 8.06 -52.48 -0.42 2.57 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -27.82 345.29 -7.85 -35.67 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.38 Total: 5.88 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -4.01 Total: -16.83 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.48 Total: -30.68 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.18 Total: -5.68 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.08 Total: -5.72 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.82 -7.85 -35.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243403520.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.524 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds