Wall clock time and date at job start Tue Mar 31 2020 14:10:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52998 * 109.47241 * 2 1
4 4 O 1.42903 * 109.47433 * 119.99520 * 2 1 3
5 5 C 1.35949 * 116.99739 * 84.81785 * 4 2 1
6 6 C 1.38820 * 119.97206 * 354.47127 * 5 4 2
7 7 C 1.38201 * 120.21799 * 179.76075 * 6 5 4
8 8 C 1.38275 * 120.15373 * 0.50803 * 7 6 5
9 9 F 1.35103 * 120.03111 * 179.71847 * 8 7 6
10 10 C 1.39527 * 119.93180 * 359.75064 * 8 7 6
11 11 C 1.48369 * 120.10319 * 179.97438 * 10 8 7
12 12 C 1.39016 * 120.41774 * 244.74119 * 11 10 8
13 13 C 1.40953 * 118.12416 * 179.72130 * 12 11 10
14 14 C 1.41377 * 120.57035 * 180.28365 * 13 12 11
15 15 H 1.08004 * 119.99853 * 204.71573 * 14 13 12
16 16 C 1.39889 * 120.00155 * 24.71546 * 14 13 12
17 17 N 1.30864 * 120.00182 * 16.79512 * 16 14 13
18 18 Si 1.86798 * 120.00168 * 196.79462 * 16 14 13
19 19 H 1.48501 * 109.47542 * 94.87526 * 18 16 14
20 20 H 1.48502 * 109.47259 * 214.87358 * 18 16 14
21 21 H 1.48501 * 109.47332 * 334.87699 * 18 16 14
22 22 C 1.40800 * 118.85781 * 0.56955 * 13 12 11
23 23 N 1.31507 * 120.69701 * 359.68715 * 22 13 12
24 24 C 1.32161 * 122.07929 * 0.02562 * 23 22 13
25 25 F 1.35095 * 119.46427 * 180.02562 * 24 23 22
26 26 C 1.38468 * 119.97098 * 174.74056 * 5 4 2
27 27 H 1.09007 * 109.47023 * 180.02562 * 1 2 3
28 28 H 1.09003 * 109.47348 * 300.00247 * 1 2 3
29 29 H 1.09000 * 109.47404 * 60.00439 * 1 2 3
30 30 H 1.09003 * 109.47348 * 239.99753 * 2 1 3
31 31 H 1.08998 * 109.47543 * 180.02562 * 3 2 1
32 32 H 1.09008 * 109.46861 * 300.00216 * 3 2 1
33 33 H 1.09003 * 109.47151 * 59.99633 * 3 2 1
34 34 H 1.07999 * 119.88586 * 0.02562 * 6 5 4
35 35 H 1.07997 * 119.92671 * 180.23432 * 7 6 5
36 36 H 1.07997 * 120.93374 * 359.97438 * 12 11 10
37 37 H 0.97000 * 120.00324 * 180.02562 * 17 16 14
38 38 H 1.07994 * 119.65686 * 179.70629 * 22 13 12
39 39 H 1.08003 * 120.07195 * 359.96408 * 26 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 2.0064 -0.6735 1.1668
5 6 2.1090 -2.0275 1.0992
6 6 1.6507 -2.7025 -0.0239
7 6 1.7570 -4.0783 -0.1001
8 6 2.3111 -4.7912 0.9471
9 9 2.4086 -6.1366 0.8724
10 6 2.7689 -4.1197 2.0812
11 6 3.3637 -4.8809 3.2074
12 6 2.7405 -4.9016 4.4498
13 6 3.3445 -5.6451 5.4838
14 6 2.7520 -5.7066 6.7660
15 1 3.3617 -5.9126 7.6333
16 6 1.3760 -5.5006 6.9112
17 7 0.5890 -5.5783 5.8685
18 14 0.6618 -5.1145 8.5935
19 1 0.5427 -3.6431 8.7551
20 1 -0.6813 -5.7361 8.7157
21 1 1.5562 -5.6573 9.6475
22 6 4.5513 -6.3205 5.2195
23 7 5.1044 -6.2655 4.0277
24 6 4.5632 -5.5831 3.0336
25 9 5.1765 -5.5629 1.8301
26 6 2.6654 -2.7325 2.1531
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3634 0.5139 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 1.8934 -0.5139 -0.8900
31 1 3.1300 1.4425 -0.0005
32 1 1.6766 1.9563 -0.8900
33 1 1.6766 1.9563 0.8900
34 1 1.2136 -2.1502 -0.8426
35 1 1.4024 -4.5983 -0.9777
36 1 1.8174 -4.3665 4.6169
37 1 -0.3651 -5.4351 5.9692
38 1 5.0277 -6.8901 6.0037
39 1 3.0186 -2.2079 3.0286
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001243444622.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:10:00
Heat of formation + Delta-G solvation = -85.232498 kcal
Electronic energy + Delta-G solvation = -26244.009026 eV
Core-core repulsion = 22173.328164 eV
Total energy + Delta-G solvation = -4070.680862 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 319.112 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-48.29630 -47.52788 -40.15610 -38.47186 -37.19690 -34.20000 -33.31319 -32.53147
-30.40787 -29.43435 -28.45138 -27.39103 -25.55147 -23.79647 -22.54658 -21.92339
-21.60997 -20.25861 -18.29888 -17.26822 -17.01366 -16.63590 -16.43130 -15.93278
-15.53563 -15.11125 -14.91638 -14.76667 -14.54858 -14.38649 -13.66798 -13.62789
-13.27633 -13.16409 -12.77836 -12.54925 -12.45907 -12.38551 -12.29776 -12.12710
-11.96056 -11.77957 -11.66346 -11.38885 -11.25855 -11.18884 -10.76157 -10.65737
-10.57200 -10.11899 -9.51864 -9.00058 -8.49980 -8.26262 -7.83395 -7.58959
-7.03173 -4.64237 1.30727 1.50956 2.28796 2.63579 2.95284 2.99213
3.01396 3.16603 3.74023 3.81678 4.33300 4.56732 4.62599 4.70998
4.85861 4.90471 4.97217 5.10407 5.24775 5.29645 5.32413 5.38423
5.50661 5.52783 5.58447 5.82591 5.89169 5.94739 6.01938 6.17270
6.31191 6.39545 6.47930 6.53995 6.73851 6.84445 6.91859 6.99624
7.40497 7.51231 7.59027 7.73339 8.18299 8.44576 8.46874 9.19394
9.89187
Molecular weight = 319.11amu
Principal moments of inertia in cm(-1)
A = 0.011287 B = 0.004456 C = 0.003623
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2480.148080 B = 6281.631509 C = 7727.060292
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.076 3.924
3 C -0.148 4.148
4 O -0.308 6.308
5 C 0.118 3.882
6 C -0.192 4.192
7 C -0.118 4.118
8 C 0.079 3.921
9 F -0.133 7.133
10 C -0.005 4.005
11 C -0.109 4.109
12 C -0.089 4.089
13 C 0.055 3.945
14 C -0.440 4.440
15 H 0.089 0.911
16 C 0.073 3.927
17 N -0.784 5.784
18 Si 0.916 3.084
19 H -0.266 1.266
20 H -0.275 1.275
21 H -0.258 1.258
22 C 0.014 3.986
23 N -0.488 5.488
24 C 0.174 3.826
25 F -0.144 7.144
26 C -0.111 4.111
27 H 0.065 0.935
28 H 0.067 0.933
29 H 0.069 0.931
30 H 0.073 0.927
31 H 0.065 0.935
32 H 0.074 0.926
33 H 0.067 0.933
34 H 0.134 0.866
35 H 0.135 0.865
36 H 0.140 0.860
37 H 0.287 0.713
38 H 0.140 0.860
39 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.862 10.736 -9.046 14.560
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C 0.020 3.980
3 C -0.205 4.205
4 O -0.223 6.223
5 C 0.073 3.927
6 C -0.211 4.211
7 C -0.137 4.137
8 C 0.059 3.941
9 F -0.111 7.111
10 C -0.006 4.006
11 C -0.112 4.112
12 C -0.115 4.115
13 C 0.050 3.950
14 C -0.469 4.469
15 H 0.107 0.893
16 C -0.147 4.147
17 N -0.408 5.408
18 Si 0.740 3.260
19 H -0.190 1.190
20 H -0.200 1.200
21 H -0.182 1.182
22 C -0.147 4.147
23 N -0.200 5.200
24 C 0.020 3.980
25 F -0.124 7.124
26 C -0.130 4.130
27 H 0.084 0.916
28 H 0.086 0.914
29 H 0.088 0.912
30 H 0.091 0.909
31 H 0.084 0.916
32 H 0.093 0.907
33 H 0.086 0.914
34 H 0.152 0.848
35 H 0.152 0.848
36 H 0.157 0.843
37 H 0.098 0.902
38 H 0.158 0.842
39 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -3.281 10.388 -9.176 14.243
hybrid contribution -1.254 0.186 0.337 1.312
sum -4.535 10.573 -8.838 14.508
Atomic orbital electron populations
1.22403 0.95177 1.03304 1.03011 1.22412 0.94292 0.93669 0.87676
1.21849 1.02198 0.93595 1.02907 1.86144 1.81407 1.16239 1.38477
1.18772 0.96804 0.82553 0.94538 1.20996 1.06825 0.94291 0.98974
1.20751 1.00830 0.93918 0.98183 1.17632 1.03260 0.77624 0.95535
1.91499 1.94197 1.28972 1.96430 1.18568 0.96951 0.92310 0.92814
1.18922 0.95781 1.02079 0.94447 1.21695 1.00537 0.99182 0.90045
1.18470 0.92276 0.90124 0.94125 1.19579 0.92725 1.40962 0.93641
0.89256 1.26024 0.97288 0.92107 0.99303 1.69781 1.06315 1.32736
1.31920 0.86146 0.78730 0.79699 0.81429 1.19048 1.20018 1.18193
1.22341 0.97365 1.03326 0.91691 1.66301 1.34819 1.17839 1.01041
1.17463 0.92668 1.05883 0.82019 1.91408 1.83484 1.95766 1.41715
1.20347 1.02210 0.91695 0.98710 0.91620 0.91356 0.91193 0.90911
0.91593 0.90697 0.91433 0.84839 0.84757 0.84287 0.90161 0.84248
0.84246
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.60 9.17 37.16 0.34 -1.26 16
2 C 0.08 0.76 2.85 -26.73 -0.08 0.68 16
3 C -0.15 -1.19 9.56 37.16 0.36 -0.84 16
4 O -0.31 -4.34 9.80 -19.58 -0.19 -4.53 16
5 C 0.12 1.86 6.59 -39.28 -0.26 1.60 16
6 C -0.19 -2.68 8.23 -39.38 -0.32 -3.00 16
7 C -0.12 -1.82 10.01 -39.58 -0.40 -2.22 16
8 C 0.08 1.55 7.07 -39.09 -0.28 1.28 16
9 F -0.13 -2.86 16.68 2.25 0.04 -2.82 16
10 C 0.00 -0.10 5.02 -104.85 -0.53 -0.63 16
11 C -0.11 -2.60 5.01 -104.75 -0.53 -3.13 16
12 C -0.09 -2.22 8.49 -38.27 -0.32 -2.54 16
13 C 0.05 1.38 5.58 -106.71 -0.60 0.78 16
14 C -0.44 -10.62 9.07 -37.77 -0.34 -10.97 16
15 H 0.09 2.02 7.90 -52.48 -0.41 1.61 16
16 C 0.07 1.67 5.18 -17.35 -0.09 1.58 16
17 N -0.78 -18.84 10.95 55.54 0.61 -18.24 16
18 Si 0.92 17.15 29.59 -169.99 -5.03 12.12 16
19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16
20 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16
21 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16
22 C 0.01 0.34 10.96 -16.72 -0.18 0.16 16
23 N -0.49 -12.49 10.33 -12.58 -0.13 -12.62 16
24 C 0.17 4.39 8.22 -16.72 -0.14 4.25 16
25 F -0.14 -3.53 16.68 2.25 0.04 -3.50 16
26 C -0.11 -2.04 9.67 -39.11 -0.38 -2.42 16
27 H 0.06 0.63 6.89 -51.93 -0.36 0.28 16
28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16
30 H 0.07 0.67 6.32 -51.93 -0.33 0.34 16
31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16
32 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16
33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
34 H 0.13 1.42 5.40 -52.49 -0.28 1.14 16
35 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16
36 H 0.14 3.49 6.25 -52.49 -0.33 3.16 16
37 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16
38 H 0.14 3.05 8.06 -52.49 -0.42 2.62 16
39 H 0.14 2.50 8.06 -52.48 -0.42 2.08 16
LS Contribution 341.97 15.07 5.15 5.15
Total: -1.00 -28.27 341.97 -7.48 -35.75
By element:
Atomic # 1 Polarization: 9.56 SS G_CDS: -4.23 Total: 5.33 kcal
Atomic # 6 Polarization: -12.92 SS G_CDS: -3.74 Total: -16.66 kcal
Atomic # 7 Polarization: -31.33 SS G_CDS: 0.48 Total: -30.85 kcal
Atomic # 8 Polarization: -4.34 SS G_CDS: -0.19 Total: -4.53 kcal
Atomic # 9 Polarization: -6.39 SS G_CDS: 0.08 Total: -6.32 kcal
Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -28.27 -7.48 -35.75 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001243444622.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.478 kcal
(2) G-P(sol) polarization free energy of solvation -28.271 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.750 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.754 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.232 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds