Wall clock time and date at job start Tue Mar 31 2020 14:09:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52998 * 109.47241 * 2 1
4 4 O 1.42903 * 109.47433 * 119.99520 * 2 1 3
5 5 C 1.35949 * 116.99739 * 84.81785 * 4 2 1
6 6 C 1.38820 * 119.97206 * 354.47127 * 5 4 2
7 7 C 1.38201 * 120.21799 * 179.76075 * 6 5 4
8 8 C 1.38275 * 120.15373 * 0.50803 * 7 6 5
9 9 F 1.35103 * 120.03111 * 179.71847 * 8 7 6
10 10 C 1.39527 * 119.93180 * 359.75064 * 8 7 6
11 11 C 1.48369 * 120.10319 * 179.97438 * 10 8 7
12 12 C 1.39016 * 120.41774 * 244.74119 * 11 10 8
13 13 C 1.40953 * 118.12416 * 179.72130 * 12 11 10
14 14 C 1.41377 * 120.57035 * 180.28365 * 13 12 11
15 15 H 1.08004 * 119.99853 * 204.71573 * 14 13 12
16 16 C 1.39889 * 120.00155 * 24.71546 * 14 13 12
17 17 N 1.30864 * 120.00182 * 16.79512 * 16 14 13
18 18 Si 1.86798 * 120.00168 * 196.79462 * 16 14 13
19 19 H 1.48501 * 109.47542 * 94.87526 * 18 16 14
20 20 H 1.48502 * 109.47259 * 214.87358 * 18 16 14
21 21 H 1.48501 * 109.47332 * 334.87699 * 18 16 14
22 22 C 1.40800 * 118.85781 * 0.56955 * 13 12 11
23 23 N 1.31507 * 120.69701 * 359.68715 * 22 13 12
24 24 C 1.32161 * 122.07929 * 0.02562 * 23 22 13
25 25 F 1.35095 * 119.46427 * 180.02562 * 24 23 22
26 26 C 1.38468 * 119.97098 * 174.74056 * 5 4 2
27 27 H 1.09007 * 109.47023 * 180.02562 * 1 2 3
28 28 H 1.09003 * 109.47348 * 300.00247 * 1 2 3
29 29 H 1.09000 * 109.47404 * 60.00439 * 1 2 3
30 30 H 1.09003 * 109.47348 * 239.99753 * 2 1 3
31 31 H 1.08998 * 109.47543 * 180.02562 * 3 2 1
32 32 H 1.09008 * 109.46861 * 300.00216 * 3 2 1
33 33 H 1.09003 * 109.47151 * 59.99633 * 3 2 1
34 34 H 1.07999 * 119.88586 * 0.02562 * 6 5 4
35 35 H 1.07997 * 119.92671 * 180.23432 * 7 6 5
36 36 H 1.07997 * 120.93374 * 359.97438 * 12 11 10
37 37 H 0.97000 * 120.00324 * 180.02562 * 17 16 14
38 38 H 1.07994 * 119.65686 * 179.70629 * 22 13 12
39 39 H 1.08003 * 120.07195 * 359.96408 * 26 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 2.0064 -0.6735 1.1668
5 6 2.1090 -2.0275 1.0992
6 6 1.6507 -2.7025 -0.0239
7 6 1.7570 -4.0783 -0.1001
8 6 2.3111 -4.7912 0.9471
9 9 2.4086 -6.1366 0.8724
10 6 2.7689 -4.1197 2.0812
11 6 3.3637 -4.8809 3.2074
12 6 2.7405 -4.9016 4.4498
13 6 3.3445 -5.6451 5.4838
14 6 2.7520 -5.7066 6.7660
15 1 3.3617 -5.9126 7.6333
16 6 1.3760 -5.5006 6.9112
17 7 0.5890 -5.5783 5.8685
18 14 0.6618 -5.1145 8.5935
19 1 0.5427 -3.6431 8.7551
20 1 -0.6813 -5.7361 8.7157
21 1 1.5562 -5.6573 9.6475
22 6 4.5513 -6.3205 5.2195
23 7 5.1044 -6.2655 4.0277
24 6 4.5632 -5.5831 3.0336
25 9 5.1765 -5.5629 1.8301
26 6 2.6654 -2.7325 2.1531
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3634 0.5139 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 1.8934 -0.5139 -0.8900
31 1 3.1300 1.4425 -0.0005
32 1 1.6766 1.9563 -0.8900
33 1 1.6766 1.9563 0.8900
34 1 1.2136 -2.1502 -0.8426
35 1 1.4024 -4.5983 -0.9777
36 1 1.8174 -4.3665 4.6169
37 1 -0.3651 -5.4351 5.9692
38 1 5.0277 -6.8901 6.0037
39 1 3.0186 -2.2079 3.0286
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001243444622.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:09:59
Heat of formation + Delta-G solvation = -99.372377 kcal
Electronic energy + Delta-G solvation = -26244.622177 eV
Core-core repulsion = 22173.328164 eV
Total energy + Delta-G solvation = -4071.294013 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 319.112 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-49.86898 -49.42758 -41.33384 -40.24698 -38.49545 -36.04672 -34.22768 -34.05062
-32.27492 -30.82399 -29.88398 -28.10072 -27.43234 -25.24012 -23.99128 -23.48687
-23.12176 -21.51586 -19.71041 -18.85265 -18.51695 -18.39035 -17.97085 -17.58261
-16.94428 -16.55940 -16.48243 -16.29999 -15.91826 -15.66986 -15.20214 -14.83667
-14.66615 -14.39076 -14.28637 -14.05754 -13.87048 -13.71916 -13.68830 -13.55044
-13.12503 -13.07372 -13.02738 -12.92769 -12.63638 -12.43019 -12.18471 -11.83119
-11.69880 -11.50312 -11.27506 -10.57791 -10.40724 -9.96283 -9.53914 -9.08081
-8.82020 -6.54325 -0.11587 0.17151 0.49968 0.76004 1.40693 1.48757
1.56085 2.13188 2.15721 2.45309 2.54951 3.20312 3.29404 3.41871
3.53918 3.65577 3.85095 3.97049 4.00974 4.17113 4.19556 4.24885
4.38997 4.57490 4.71530 4.73801 4.81784 4.84382 4.89338 4.93859
4.98034 5.06246 5.08499 5.12555 5.20357 5.28496 5.31957 5.49975
5.61590 5.67853 5.85791 6.30539 6.40889 6.55778 6.60676 7.26278
8.13273
Molecular weight = 319.11amu
Principal moments of inertia in cm(-1)
A = 0.011287 B = 0.004456 C = 0.003623
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2480.148080 B = 6281.631509 C = 7727.060292
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.062 3.938
3 C -0.147 4.147
4 O -0.322 6.322
5 C 0.130 3.870
6 C -0.172 4.172
7 C -0.101 4.101
8 C 0.045 3.955
9 F -0.153 7.153
10 C -0.036 4.036
11 C -0.098 4.098
12 C -0.111 4.111
13 C 0.036 3.964
14 C -0.456 4.456
15 H 0.102 0.898
16 C 0.035 3.965
17 N -0.810 5.810
18 Si 0.993 3.007
19 H -0.261 1.261
20 H -0.268 1.268
21 H -0.250 1.250
22 C 0.000 4.000
23 N -0.501 5.501
24 C 0.140 3.860
25 F -0.146 7.146
26 C -0.128 4.128
27 H 0.058 0.942
28 H 0.059 0.941
29 H 0.099 0.901
30 H 0.089 0.911
31 H 0.059 0.941
32 H 0.104 0.896
33 H 0.061 0.939
34 H 0.178 0.822
35 H 0.171 0.829
36 H 0.131 0.869
37 H 0.297 0.703
38 H 0.161 0.839
39 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.762 12.599 -9.938 17.050
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.007 3.993
3 C -0.204 4.204
4 O -0.237 6.237
5 C 0.084 3.916
6 C -0.190 4.190
7 C -0.119 4.119
8 C 0.025 3.975
9 F -0.132 7.132
10 C -0.038 4.038
11 C -0.102 4.102
12 C -0.136 4.136
13 C 0.031 3.969
14 C -0.484 4.484
15 H 0.120 0.880
16 C -0.183 4.183
17 N -0.434 5.434
18 Si 0.812 3.188
19 H -0.185 1.185
20 H -0.193 1.193
21 H -0.173 1.173
22 C -0.162 4.162
23 N -0.213 5.213
24 C -0.013 4.013
25 F -0.125 7.125
26 C -0.147 4.147
27 H 0.077 0.923
28 H 0.078 0.922
29 H 0.118 0.882
30 H 0.107 0.893
31 H 0.078 0.922
32 H 0.122 0.878
33 H 0.080 0.920
34 H 0.195 0.805
35 H 0.188 0.812
36 H 0.149 0.851
37 H 0.108 0.892
38 H 0.178 0.822
39 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -5.171 12.261 -10.100 16.706
hybrid contribution -0.750 -0.263 0.556 0.970
sum -5.920 11.998 -9.543 16.434
Atomic orbital electron populations
1.22412 0.93976 1.03176 1.04130 1.22876 0.95321 0.94411 0.86683
1.21896 1.01901 0.92454 1.04112 1.86162 1.81323 1.15186 1.40981
1.18752 0.95323 0.83531 0.93961 1.21437 1.04746 0.93738 0.99098
1.21136 0.98652 0.94438 0.97692 1.18009 1.05601 0.77099 0.96765
1.91437 1.94632 1.30492 1.96599 1.18554 0.99155 0.93255 0.92835
1.19133 0.94883 1.00964 0.95215 1.21658 1.00757 1.00293 0.90890
1.18815 0.92773 0.90348 0.94936 1.19966 0.93820 1.41045 0.93597
0.88028 1.26966 0.97055 0.90966 1.03293 1.69838 1.07151 1.32171
1.34251 0.85010 0.78033 0.79515 0.76240 1.18542 1.19285 1.17294
1.22665 0.97624 1.03938 0.91941 1.66265 1.35329 1.18195 1.01515
1.17691 0.93790 1.07627 0.82179 1.91374 1.83550 1.95919 1.41705
1.20271 1.03635 0.91008 0.99800 0.92318 0.92190 0.88231 0.89267
0.92157 0.87756 0.91967 0.80454 0.81199 0.85144 0.89211 0.82194
0.85223
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.52 9.17 71.98 0.66 -1.86 16
2 C 0.06 1.04 2.85 30.59 0.09 1.13 16
3 C -0.15 -1.92 9.56 71.98 0.69 -1.23 16
4 O -0.32 -8.52 9.80 -92.98 -0.91 -9.44 16
5 C 0.13 3.92 6.59 22.46 0.15 4.07 16
6 C -0.17 -4.26 8.23 22.40 0.18 -4.07 16
7 C -0.10 -2.90 10.01 22.27 0.22 -2.68 16
8 C 0.04 1.78 7.07 22.59 0.16 1.94 16
9 F -0.15 -6.83 16.68 44.97 0.75 -6.08 16
10 C -0.04 -1.58 5.02 -20.01 -0.10 -1.68 16
11 C -0.10 -4.98 5.01 -19.95 -0.10 -5.08 16
12 C -0.11 -5.80 8.49 23.12 0.20 -5.60 16
13 C 0.04 1.88 5.58 -21.22 -0.12 1.77 16
14 C -0.46 -22.31 9.07 23.44 0.21 -22.10 16
15 H 0.10 4.58 7.90 -2.91 -0.02 4.56 16
16 C 0.04 1.61 5.18 85.24 0.44 2.05 16
17 N -0.81 -39.43 10.95 21.82 0.24 -39.20 16
18 Si 0.99 34.31 29.59 68.60 2.03 36.34 16
19 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16
20 H -0.27 -8.94 7.11 99.48 0.71 -8.24 16
21 H -0.25 -8.26 7.11 99.48 0.71 -7.56 16
22 C 0.00 0.01 10.96 85.37 0.94 0.94 16
23 N -0.50 -26.79 10.33 -193.73 -2.00 -28.80 16
24 C 0.14 7.45 8.22 85.09 0.70 8.15 16
25 F -0.15 -7.50 16.68 44.97 0.75 -6.75 16
26 C -0.13 -4.86 9.67 22.58 0.22 -4.64 16
27 H 0.06 0.91 6.89 -2.38 -0.02 0.90 16
28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16
29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16
30 H 0.09 1.22 6.32 -2.39 -0.02 1.20 16
31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16
32 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16
33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16
34 H 0.18 2.83 5.40 -2.91 -0.02 2.81 16
35 H 0.17 3.64 8.06 -2.91 -0.02 3.61 16
36 H 0.13 6.92 6.25 -2.91 -0.02 6.90 16
37 H 0.30 12.96 8.30 -92.71 -0.77 12.19 16
38 H 0.16 7.17 8.06 -2.91 -0.02 7.15 16
39 H 0.13 4.97 8.06 -2.91 -0.02 4.95 16
Total: -1.00 -64.72 341.97 6.49 -58.23
By element:
Atomic # 1 Polarization: 23.49 SS G_CDS: 1.10 Total: 24.58 kcal
Atomic # 6 Polarization: -33.43 SS G_CDS: 4.54 Total: -28.89 kcal
Atomic # 7 Polarization: -66.23 SS G_CDS: -1.76 Total: -67.99 kcal
Atomic # 8 Polarization: -8.52 SS G_CDS: -0.91 Total: -9.44 kcal
Atomic # 9 Polarization: -14.33 SS G_CDS: 1.50 Total: -12.83 kcal
Atomic # 14 Polarization: 34.31 SS G_CDS: 2.03 Total: 36.34 kcal
Total: -64.72 6.49 -58.23 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001243444622.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.143 kcal
(2) G-P(sol) polarization free energy of solvation -64.716 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.859 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.487 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.229 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.372 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds