Wall clock time and date at job start Tue Mar 31 2020 12:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35535 * 116.99763 * 2 1 4 4 C 1.39115 * 120.48630 * 359.97438 * 3 2 1 5 5 C 1.38318 * 118.63724 * 179.97438 * 4 3 2 6 6 C 1.40080 * 119.57231 * 0.02562 * 5 4 3 7 7 C 1.48255 * 119.51438 * 179.97438 * 6 5 4 8 8 C 1.39427 * 120.12789 * 179.97438 * 7 6 5 9 9 C 1.37994 * 119.87018 * 180.02562 * 8 7 6 10 10 C 1.38337 * 120.12874 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.87023 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47212 * 269.99776 * 11 10 9 13 13 F 1.39905 * 109.47072 * 29.99844 * 11 10 9 14 14 F 1.39900 * 109.47439 * 149.99663 * 11 10 9 15 15 C 1.38344 * 120.26135 * 0.26844 * 10 9 8 16 16 C 1.37991 * 120.12676 * 359.44951 * 15 10 9 17 17 N 1.32170 * 120.96453 * 0.25272 * 6 5 4 18 18 C 1.33571 * 121.46514 * 359.48342 * 17 6 5 19 19 C 1.40996 * 119.83767 * 180.26508 * 18 17 6 20 20 H 1.07996 * 120.00209 * 180.24897 * 19 18 17 21 21 C 1.40027 * 119.99698 * 0.24649 * 19 18 17 22 22 N 1.30772 * 120.00255 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99815 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47012 * 90.00126 * 23 21 19 25 25 H 1.48500 * 109.47038 * 209.99903 * 23 21 19 26 26 H 1.48494 * 109.47061 * 330.00039 * 23 21 19 27 27 H 1.08997 * 109.47475 * 299.99923 * 1 2 3 28 28 H 1.08998 * 109.47173 * 60.00302 * 1 2 3 29 29 H 1.09004 * 109.46822 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.67755 * 359.95700 * 4 3 2 31 31 H 1.08000 * 120.21858 * 180.02562 * 5 4 3 32 32 H 1.08001 * 120.06509 * 0.04615 * 8 7 6 33 33 H 1.08002 * 119.93423 * 179.97438 * 9 8 7 34 34 H 1.09004 * 109.47261 * 179.97438 * 12 11 10 35 35 H 1.09002 * 109.47153 * 299.99998 * 12 11 10 36 36 H 1.09001 * 109.47289 * 60.00082 * 12 11 10 37 37 H 1.07997 * 119.93888 * 179.70696 * 15 10 9 38 38 H 1.08001 * 120.06729 * 180.29862 * 16 15 10 39 39 H 0.96996 * 120.00038 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.2964 2.3807 -0.0005 5 6 1.9637 3.5923 0.0000 6 6 3.3644 3.6100 0.0006 7 6 4.0784 4.9093 0.0006 8 6 5.4723 4.9419 0.0017 9 6 6.1314 6.1543 0.0022 10 6 5.4119 7.3358 0.0022 11 6 6.1376 8.6565 0.0034 12 6 6.3821 9.1028 1.4463 13 9 7.3639 8.5154 -0.6552 14 9 5.3617 9.6157 -0.6562 15 6 4.0287 7.3097 0.0073 16 6 3.3587 6.1034 0.0009 17 7 4.0587 2.4854 -0.0044 18 6 3.4556 1.2936 0.0001 19 6 4.2301 0.1154 0.0001 20 1 3.7452 -0.8496 -0.0003 21 6 5.6280 0.1966 0.0007 22 7 6.2152 1.3650 0.0016 23 14 6.6542 -1.3644 0.0000 24 1 6.9266 -1.7771 -1.4002 25 1 7.9391 -1.1125 0.7007 26 1 5.9127 -2.4445 0.6991 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2170 2.3461 -0.0017 31 1 1.4086 4.5186 0.0000 32 1 6.0350 4.0201 0.0017 33 1 7.2111 6.1807 0.0035 34 1 6.9075 10.0579 1.4472 35 1 5.4267 9.2128 1.9594 36 1 6.9867 8.3556 1.9603 37 1 3.4722 8.2353 0.0121 38 1 2.2788 6.0843 0.0000 39 1 7.1835 1.4212 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243645360.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:18 Heat of formation + Delta-G solvation = -95.072011 kcal Electronic energy + Delta-G solvation = -25863.918185 eV Core-core repulsion = 21792.810650 eV Total energy + Delta-G solvation = -4071.107535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -50.00633 -48.02609 -40.93998 -39.98882 -38.32080 -35.66219 -34.10311 -32.51738 -31.83626 -31.69781 -29.89647 -28.09690 -27.37965 -25.12504 -24.05335 -22.98570 -22.74356 -21.48922 -19.45004 -18.78084 -18.46579 -18.29227 -17.73000 -17.27172 -16.82753 -16.45615 -16.35188 -15.67020 -15.48452 -15.05785 -14.88640 -14.63766 -14.53392 -14.50246 -14.26436 -14.14648 -14.06776 -13.70443 -13.38894 -13.34442 -13.09010 -12.97544 -12.85793 -12.82658 -12.43502 -12.14170 -12.01737 -11.96497 -11.75435 -11.58118 -11.28085 -10.12442 -10.01622 -9.88448 -9.64896 -8.72100 -8.31471 -6.37448 -0.17674 0.48233 0.93792 1.16428 1.41381 1.52155 1.55472 2.24430 2.61021 2.72922 2.81259 3.00156 3.14610 3.47453 3.74554 3.75972 3.90480 3.96861 4.10196 4.26271 4.33065 4.45420 4.47122 4.50434 4.59815 4.61754 4.72175 4.74349 4.90030 4.90915 4.92996 5.02703 5.13925 5.29363 5.31896 5.46068 5.52992 5.64316 5.80975 5.97191 6.10775 6.30358 6.38227 6.80070 7.12211 8.08531 8.44617 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.003773 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.027760 B = 7419.612040 C = 9218.267200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.333 6.333 3 C -0.041 4.041 4 C -0.148 4.148 5 C -0.261 4.261 6 C 0.117 3.883 7 C -0.022 4.022 8 C -0.104 4.104 9 C -0.096 4.096 10 C -0.166 4.166 11 C 0.337 3.663 12 C -0.182 4.182 13 F -0.207 7.207 14 F -0.202 7.202 15 C -0.088 4.088 16 C -0.110 4.110 17 N -0.476 5.476 18 C 0.214 3.786 19 C -0.451 4.451 20 H 0.084 0.916 21 C 0.027 3.973 22 N -0.748 5.748 23 Si 0.983 3.017 24 H -0.265 1.265 25 H -0.266 1.266 26 H -0.260 1.260 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.114 0.886 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.157 0.843 38 H 0.148 0.852 39 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.537 10.920 2.570 11.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.247 6.247 3 C -0.090 4.090 4 C -0.172 4.172 5 C -0.284 4.284 6 C -0.023 4.023 7 C -0.023 4.023 8 C -0.123 4.123 9 C -0.114 4.114 10 C -0.167 4.167 11 C 0.301 3.699 12 C -0.239 4.239 13 F -0.188 7.188 14 F -0.183 7.183 15 C -0.106 4.106 16 C -0.129 4.129 17 N -0.191 5.191 18 C 0.086 3.914 19 C -0.483 4.483 20 H 0.102 0.898 21 C -0.194 4.194 22 N -0.371 5.371 23 Si 0.804 3.196 24 H -0.190 1.190 25 H -0.190 1.190 26 H -0.184 1.184 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.132 0.868 30 H 0.159 0.841 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.154 0.846 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.174 0.826 38 H 0.165 0.835 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.356 10.865 2.536 11.239 hybrid contribution -0.685 -0.800 -0.329 1.103 sum -2.041 10.065 2.208 10.505 Atomic orbital electron populations 1.23133 0.78425 1.04476 1.01061 1.85889 1.21696 1.27163 1.89919 1.20448 0.93454 0.84841 1.10214 1.21276 0.99610 0.91697 1.04594 1.21444 0.93746 0.97853 1.15374 1.20264 0.90856 0.92620 0.98602 1.19032 0.93489 0.91688 0.98113 1.21563 0.94403 0.98669 0.97654 1.20929 1.00504 0.90930 0.99047 1.20398 0.95303 0.93696 1.07346 1.19699 0.75019 0.84676 0.90520 1.22776 1.06365 1.04690 0.90105 1.92991 1.45676 1.96244 1.83905 1.92989 1.75605 1.65897 1.83789 1.20979 0.92621 0.98649 0.98329 1.21389 1.00971 0.90480 1.00075 1.68798 1.36151 0.95972 1.18145 1.18560 0.86849 0.92565 0.93426 1.19717 0.91956 0.92871 1.43776 0.89790 1.26848 0.99147 1.00625 0.92824 1.70156 1.10981 1.26484 1.29475 0.85193 0.77397 0.77714 0.79323 1.18960 1.18997 1.18370 0.92865 0.92933 0.86806 0.84087 0.84602 0.85363 0.84577 0.88273 0.87813 0.88684 0.82573 0.83455 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 9.83 113.37 1.11 1.85 16 2 O -0.33 -14.92 9.61 -88.39 -0.85 -15.77 16 3 C -0.04 -2.03 6.74 23.26 0.16 -1.87 16 4 C -0.15 -6.30 9.11 22.50 0.21 -6.10 16 5 C -0.26 -11.12 9.46 22.74 0.22 -10.90 16 6 C 0.12 5.64 6.74 42.21 0.28 5.92 16 7 C -0.02 -0.93 5.88 -20.04 -0.12 -1.04 16 8 C -0.10 -4.28 9.57 22.50 0.22 -4.07 16 9 C -0.10 -3.19 9.38 22.24 0.21 -2.98 16 10 C -0.17 -4.76 4.99 -19.82 -0.10 -4.86 16 11 C 0.34 8.11 2.32 29.85 0.07 8.18 16 12 C -0.18 -3.02 9.37 71.98 0.67 -2.34 16 13 F -0.21 -5.64 16.20 44.97 0.73 -4.91 16 14 F -0.20 -5.01 16.21 44.97 0.73 -4.28 16 15 C -0.09 -2.41 9.38 22.24 0.21 -2.20 16 16 C -0.11 -3.55 9.42 22.50 0.21 -3.34 16 17 N -0.48 -26.27 6.90 -177.85 -1.23 -27.50 16 18 C 0.21 12.05 6.56 40.33 0.26 12.32 16 19 C -0.45 -25.12 8.94 23.38 0.21 -24.91 16 20 H 0.08 4.58 7.31 -2.91 -0.02 4.55 16 21 C 0.03 1.40 5.50 85.28 0.47 1.87 16 22 N -0.75 -39.56 11.08 21.84 0.24 -39.32 16 23 Si 0.98 38.88 29.56 68.60 2.03 40.90 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 26 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 27 H 0.05 1.48 7.69 -2.39 -0.02 1.46 16 28 H 0.05 1.46 7.69 -2.39 -0.02 1.44 16 29 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 30 H 0.14 4.84 6.43 -2.91 -0.02 4.82 16 31 H 0.14 4.68 6.16 -2.91 -0.02 4.66 16 32 H 0.13 6.09 7.15 -2.91 -0.02 6.07 16 33 H 0.14 4.07 7.59 -2.91 -0.02 4.05 16 34 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.16 3.26 7.60 -2.91 -0.02 3.24 16 38 H 0.15 4.05 6.16 -2.91 -0.02 4.03 16 39 H 0.28 13.32 8.29 -92.71 -0.77 12.55 16 Total: -1.00 -66.67 338.69 7.04 -59.64 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 1.10 Total: 25.73 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 4.29 Total: -34.49 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -0.98 Total: -66.82 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.85 Total: -15.77 kcal Atomic # 9 Polarization: -10.65 SS G_CDS: 1.46 Total: -9.20 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.90 kcal Total: -66.67 7.04 -59.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243645360.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.434 kcal (2) G-P(sol) polarization free energy of solvation -66.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds