Wall clock time and date at job start Tue Mar 31 2020 12:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38877 * 119.24017 * 2 1 4 4 C 1.36882 * 119.81308 * 179.97438 * 3 2 1 5 5 C 1.41124 * 118.39656 * 359.97438 * 4 3 2 6 6 C 1.40855 * 120.71841 * 179.97438 * 5 4 3 7 7 H 1.07995 * 119.99849 * 152.96165 * 6 5 4 8 8 C 1.40040 * 119.99848 * 332.96192 * 6 5 4 9 9 N 1.30793 * 120.00286 * 345.39677 * 8 6 5 10 10 Si 1.86807 * 119.99747 * 165.39793 * 8 6 5 11 11 H 1.48505 * 109.46917 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47028 * 119.99903 * 10 8 6 13 13 H 1.48500 * 109.47017 * 239.99876 * 10 8 6 14 14 C 1.41919 * 118.55730 * 0.02562 * 5 4 3 15 15 C 1.47683 * 119.99702 * 180.02562 * 14 5 4 16 16 C 1.39788 * 120.09721 * 316.01610 * 15 14 5 17 17 C 1.37729 * 119.90784 * 179.79183 * 16 15 14 18 18 C 1.38991 * 120.09398 * 0.46139 * 17 16 15 19 19 O 1.35779 * 119.90648 * 179.77053 * 18 17 16 20 20 C 1.42898 * 116.99820 * 0.02562 * 19 18 17 21 21 C 1.52997 * 109.46930 * 180.02562 * 20 19 18 22 22 F 1.39897 * 109.47450 * 299.99668 * 21 20 19 23 23 F 1.39907 * 109.47297 * 60.00177 * 21 20 19 24 24 C 1.38993 * 120.18708 * 359.78723 * 18 17 16 25 25 C 1.37726 * 120.09875 * 359.97438 * 24 18 17 26 26 N 1.31727 * 119.24309 * 179.73395 * 2 1 3 27 27 H 1.09000 * 109.46910 * 90.00018 * 1 2 3 28 28 H 1.09002 * 109.46504 * 209.99514 * 1 2 3 29 29 H 1.09001 * 109.46847 * 329.99666 * 1 2 3 30 30 H 1.07996 * 120.09942 * 359.95652 * 3 2 1 31 31 H 1.08000 * 120.80093 * 180.02562 * 4 3 2 32 32 H 0.96997 * 119.99753 * 179.97438 * 9 8 6 33 33 H 1.08001 * 120.04177 * 359.97438 * 16 15 14 34 34 H 1.07995 * 119.95101 * 180.23313 * 17 16 15 35 35 H 1.09008 * 109.47011 * 300.00034 * 20 19 18 36 36 H 1.09000 * 109.47075 * 59.99993 * 20 19 18 37 37 H 1.09002 * 109.47135 * 179.97438 * 21 20 19 38 38 H 1.08008 * 119.95473 * 179.97438 * 24 18 17 39 39 H 1.07995 * 120.04923 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1854 1.2118 0.0000 4 6 3.5542 1.2255 0.0005 5 6 4.2377 -0.0092 0.0016 6 6 5.6456 -0.0522 0.0017 7 1 6.1599 -0.9009 0.4276 8 6 6.3784 1.0057 -0.5506 9 7 5.7828 1.8864 -1.3123 10 14 8.2067 1.1590 -0.1993 11 1 8.6361 0.0449 0.6838 12 1 8.9628 1.0989 -1.4760 13 1 8.4745 2.4552 0.4740 14 6 3.4757 -1.2065 0.0016 15 6 4.1583 -2.5161 0.0033 16 6 5.2550 -2.7360 -0.8352 17 6 5.8913 -3.9575 -0.8273 18 6 5.4386 -4.9738 0.0057 19 8 6.0660 -6.1780 0.0070 20 6 7.1828 -6.3286 -0.8717 21 6 7.7545 -7.7408 -0.7323 22 9 8.1686 -7.9482 0.5878 23 9 6.7699 -8.6775 -1.0648 24 6 4.3454 -4.7611 0.8372 25 6 3.7062 -3.5411 0.8393 26 7 2.1506 -1.1494 0.0053 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3632 -0.8901 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6347 2.1408 -0.0007 31 1 4.0979 2.1587 0.0010 32 1 6.2904 2.6194 -1.6945 33 1 5.6046 -1.9483 -1.4861 34 1 6.7410 -4.1270 -1.4721 35 1 6.8601 -6.1675 -1.9003 36 1 7.9497 -5.5985 -0.6129 37 1 8.6061 -7.8559 -1.4028 38 1 3.9965 -5.5536 1.4828 39 1 2.8571 -3.3766 1.4860 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244071128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:45 Heat of formation + Delta-G solvation = -100.277423 kcal Electronic energy + Delta-G solvation = -25634.844082 eV Core-core repulsion = 21563.510824 eV Total energy + Delta-G solvation = -4071.333259 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.09443 -47.12750 -39.78421 -38.66334 -36.81276 -34.39704 -32.07626 -30.93581 -30.85544 -30.11258 -28.56310 -27.60625 -24.49256 -23.82209 -22.47918 -21.80308 -20.59265 -20.16103 -18.47011 -17.64897 -17.48322 -16.97419 -16.82734 -15.71435 -15.61164 -15.46477 -14.98583 -14.39435 -14.06986 -13.96116 -13.76103 -13.48341 -13.36109 -13.12973 -12.93968 -12.77722 -12.43946 -12.33884 -12.15216 -11.85698 -11.64822 -11.54665 -11.32996 -11.18990 -11.03330 -10.99201 -10.71765 -10.59900 -10.32611 -9.85154 -9.47719 -8.47526 -8.43591 -8.10896 -7.85509 -7.22914 -6.92896 -4.55705 1.76994 1.98237 2.55177 2.90116 2.94438 2.98555 2.99761 3.08173 3.60849 3.74525 3.91861 4.23366 4.37071 4.48512 4.68770 4.95575 5.16020 5.29384 5.37093 5.45597 5.51225 5.84997 5.99933 6.05757 6.08730 6.21550 6.30899 6.38261 6.48164 6.59313 6.74422 6.78618 6.85537 6.94646 6.99473 7.19266 7.22282 7.39784 7.61480 7.69407 7.82240 7.86836 8.31698 8.53356 8.60798 9.53604 9.92093 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.003879 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.972663 B = 7215.818698 C = 9188.344610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.007 4.007 3 C -0.144 4.144 4 C -0.127 4.127 5 C 0.083 3.917 6 C -0.441 4.441 7 H 0.089 0.911 8 C 0.074 3.926 9 N -0.786 5.786 10 Si 0.907 3.093 11 H -0.257 1.257 12 H -0.272 1.272 13 H -0.270 1.270 14 C 0.019 3.981 15 C -0.006 4.006 16 C -0.055 4.055 17 C -0.212 4.212 18 C 0.099 3.901 19 O -0.310 6.310 20 C 0.007 3.993 21 C 0.273 3.727 22 F -0.199 7.199 23 F -0.199 7.199 24 C -0.152 4.152 25 C -0.071 4.071 26 N -0.450 5.450 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.284 0.716 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.817 -9.201 -1.123 10.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.149 4.149 3 C -0.164 4.164 4 C -0.153 4.153 5 C 0.079 3.921 6 C -0.470 4.470 7 H 0.107 0.893 8 C -0.145 4.145 9 N -0.411 5.411 10 Si 0.731 3.269 11 H -0.180 1.180 12 H -0.197 1.197 13 H -0.195 1.195 14 C -0.119 4.119 15 C -0.007 4.007 16 C -0.074 4.074 17 C -0.231 4.231 18 C 0.055 3.945 19 O -0.224 6.224 20 C -0.070 4.070 21 C 0.219 3.781 22 F -0.180 7.180 23 F -0.181 7.181 24 C -0.171 4.171 25 C -0.090 4.090 26 N -0.159 5.159 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.095 0.905 33 H 0.156 0.844 34 H 0.137 0.863 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.329 -9.938 -1.130 10.899 hybrid contribution 1.452 1.216 -0.105 1.897 sum 5.781 -8.722 -1.235 10.536 Atomic orbital electron populations 1.20290 0.91527 1.00851 1.00522 1.20259 0.94854 0.88537 1.11214 1.21256 0.95452 0.97141 1.02569 1.21398 0.92603 0.98815 1.02471 1.18334 0.94104 0.90815 0.88876 1.19633 0.91036 1.03944 1.32362 0.89270 1.25995 1.01520 0.94264 0.92726 1.69771 1.38819 1.11133 1.21351 0.86246 0.81463 0.79735 0.79444 1.18017 1.19709 1.19473 1.19405 0.88286 0.91208 1.12984 1.18388 0.94726 0.92136 0.95483 1.21272 0.93870 0.95374 0.96920 1.21018 1.03697 0.94693 1.03686 1.18955 0.94096 0.83750 0.97687 1.86019 1.43250 1.32487 1.60651 1.23891 0.90657 0.95864 0.96587 1.22059 0.88883 0.86205 0.80912 1.93017 1.90603 1.95656 1.38772 1.93018 1.65100 1.67766 1.92201 1.20183 0.96572 0.98415 1.01914 1.21082 0.98561 0.91412 0.97969 1.66865 1.09620 1.29249 1.10117 0.93158 0.92562 0.92916 0.88337 0.85583 0.90454 0.84405 0.86328 0.89108 0.89048 0.85459 0.86019 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.15 36.01 0.37 -0.96 16 2 C -0.01 -0.16 6.79 -82.40 -0.56 -0.72 16 3 C -0.14 -3.25 9.64 -39.84 -0.38 -3.63 16 4 C -0.13 -3.12 8.72 -38.98 -0.34 -3.46 16 5 C 0.08 2.09 5.55 -106.40 -0.59 1.50 16 6 C -0.44 -10.63 6.77 -37.92 -0.26 -10.88 16 7 H 0.09 2.12 6.41 -52.49 -0.34 1.78 16 8 C 0.07 1.69 5.21 -17.32 -0.09 1.60 16 9 N -0.79 -18.58 10.98 55.55 0.61 -17.98 16 10 Si 0.91 17.20 29.59 -169.99 -5.03 12.17 16 11 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 12 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 13 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 14 C 0.02 0.47 6.42 -82.25 -0.53 -0.06 16 15 C -0.01 -0.14 5.25 -104.88 -0.55 -0.69 16 16 C -0.06 -1.11 7.81 -39.19 -0.31 -1.41 16 17 C -0.21 -3.59 9.02 -39.49 -0.36 -3.94 16 18 C 0.10 1.69 6.70 -39.02 -0.26 1.43 16 19 O -0.31 -4.76 10.02 -19.05 -0.19 -4.95 16 20 C 0.01 0.07 4.96 37.16 0.18 0.26 16 21 C 0.27 2.50 5.63 37.16 0.21 2.71 16 22 F -0.20 -2.38 17.28 2.25 0.04 -2.34 16 23 F -0.20 -2.36 17.28 2.25 0.04 -2.32 16 24 C -0.15 -2.69 9.97 -39.49 -0.39 -3.08 16 25 C -0.07 -1.40 9.65 -39.19 -0.38 -1.78 16 26 N -0.45 -10.84 10.05 -5.46 -0.05 -10.90 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 31 H 0.13 3.13 6.34 -52.49 -0.33 2.80 16 32 H 0.28 6.09 8.29 -40.82 -0.34 5.75 16 33 H 0.14 2.88 6.77 -52.49 -0.36 2.52 16 34 H 0.12 1.61 6.28 -52.49 -0.33 1.28 16 35 H 0.09 0.81 7.65 -51.92 -0.40 0.41 16 36 H 0.09 0.84 7.65 -51.93 -0.40 0.44 16 37 H 0.13 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.12 1.91 8.06 -52.48 -0.42 1.48 16 39 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -28.72 340.81 -7.93 -36.64 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -4.24 Total: 7.64 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -4.24 Total: -23.11 kcal Atomic # 7 Polarization: -29.43 SS G_CDS: 0.55 Total: -28.87 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.19 Total: -4.95 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.08 Total: -4.65 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.72 -7.93 -36.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244071128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.634 kcal (2) G-P(sol) polarization free energy of solvation -28.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds