Wall clock time and date at job start Tue Mar 31 2020 12:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31263 * 119.79763 * 2 1 4 4 C 1.33059 * 121.71968 * 180.26801 * 3 2 1 5 5 C 1.47840 * 119.45742 * 179.70717 * 4 3 2 6 6 C 1.39718 * 120.08619 * 359.73305 * 5 4 3 7 7 C 1.37755 * 119.90928 * 180.02562 * 6 5 4 8 8 C 1.38979 * 120.08948 * 359.97438 * 7 6 5 9 9 O 1.35783 * 119.91369 * 180.02562 * 8 7 6 10 10 C 1.42894 * 117.00387 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47567 * 179.97438 * 10 9 8 12 12 F 1.39901 * 109.46916 * 300.00404 * 11 10 9 13 13 F 1.39903 * 109.46742 * 60.00061 * 11 10 9 14 14 C 1.38976 * 120.17649 * 0.27274 * 8 7 6 15 15 C 1.37756 * 120.08757 * 359.45169 * 14 8 7 16 16 C 1.39970 * 121.08779 * 359.43538 * 4 3 2 17 17 C 1.36555 * 119.46148 * 0.27074 * 16 4 3 18 18 C 1.40951 * 119.80153 * 179.70734 * 2 1 3 19 19 C 1.41027 * 120.54670 * 0.03891 * 18 2 1 20 20 H 1.07999 * 120.00266 * 334.63207 * 19 18 2 21 21 C 1.40000 * 119.99911 * 154.62889 * 19 18 2 22 22 N 1.30811 * 120.00056 * 343.58437 * 21 19 18 23 23 Si 1.86796 * 119.99842 * 163.58852 * 21 19 18 24 24 H 1.48506 * 109.47027 * 94.63090 * 23 21 19 25 25 H 1.48499 * 109.47238 * 214.63354 * 23 21 19 26 26 H 1.48498 * 109.47206 * 334.63487 * 23 21 19 27 27 H 1.09006 * 109.46552 * 270.29391 * 1 2 3 28 28 H 1.09000 * 109.47402 * 30.29200 * 1 2 3 29 29 H 1.08997 * 109.47000 * 150.29717 * 1 2 3 30 30 H 1.07998 * 120.04527 * 0.03469 * 6 5 4 31 31 H 1.08000 * 119.95687 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.47344 * 300.00682 * 10 9 8 33 33 H 1.09006 * 109.46581 * 60.00218 * 10 9 8 34 34 H 1.08995 * 109.47244 * 180.02562 * 11 10 9 35 35 H 1.07994 * 119.95572 * 179.70405 * 14 8 7 36 36 H 1.08004 * 120.04653 * 180.29172 * 15 14 8 37 37 H 1.08002 * 120.26619 * 180.29650 * 16 4 3 38 38 H 1.08008 * 120.78490 * 179.97438 * 17 16 4 39 39 H 0.96997 * 120.00013 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1391 0.0000 4 6 3.4891 1.1837 -0.0053 5 6 4.1726 2.4946 -0.0116 6 6 3.4243 3.6746 -0.0176 7 6 4.0649 4.8941 -0.0240 8 6 5.4535 4.9518 -0.0240 9 8 6.0812 6.1558 -0.0297 10 6 7.5101 6.1425 -0.0288 11 6 8.0336 7.5802 -0.0365 12 9 7.5741 8.2376 -1.1827 13 9 7.5727 8.2503 1.1018 14 6 6.2013 3.7804 -0.0232 15 6 5.5683 2.5569 -0.0110 16 6 4.2517 0.0100 0.0007 17 6 3.6206 -1.2009 0.0065 18 6 2.2075 -1.2231 0.0062 19 6 1.5098 -2.4487 0.0117 20 1 0.5080 -2.4980 0.4120 21 6 2.1159 -3.6014 -0.5020 22 7 3.1723 -3.4996 -1.2666 23 14 1.4158 -5.2849 -0.0955 24 1 0.4897 -5.7098 -1.1758 25 1 2.5238 -6.2667 0.0214 26 1 0.6773 -5.2164 1.1910 27 1 -0.3633 0.0053 1.0277 28 1 -0.3634 0.8873 -0.5184 29 1 -0.3633 -0.8926 -0.5092 30 1 2.3452 3.6306 -0.0171 31 1 3.4873 5.8067 -0.0291 32 1 7.8681 5.6298 0.8640 33 1 7.8691 5.6208 -0.9159 34 1 9.1235 7.5700 -0.0362 35 1 7.2802 3.8293 -0.0280 36 1 6.1502 1.6470 -0.0057 37 1 5.3305 0.0617 0.0011 38 1 4.1879 -2.1200 0.0108 39 1 3.5920 -4.2983 -1.6228 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244072187.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:49 Heat of formation + Delta-G solvation = -100.439022 kcal Electronic energy + Delta-G solvation = -24913.246449 eV Core-core repulsion = 20841.906183 eV Total energy + Delta-G solvation = -4071.340266 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.18484 -47.21795 -39.92325 -38.69389 -37.01741 -34.28619 -32.26811 -31.06447 -31.02030 -30.19462 -28.81711 -27.01851 -25.04572 -23.87410 -22.61205 -21.97567 -20.51495 -20.02534 -18.62278 -17.74560 -17.50571 -17.17403 -16.93139 -15.96344 -15.60239 -15.48019 -15.05986 -14.72351 -14.10323 -14.05387 -13.62416 -13.57233 -13.32182 -13.27692 -13.04920 -12.90935 -12.52956 -12.40025 -12.22020 -11.74102 -11.66079 -11.54056 -11.47264 -11.30074 -11.03141 -10.92876 -10.80506 -10.63401 -10.49990 -9.85913 -9.54136 -8.65634 -8.42899 -8.20076 -8.10826 -7.19280 -6.96888 -4.57457 1.51093 1.75412 2.60988 2.86299 2.87708 2.91908 2.96399 3.10903 3.50462 3.70490 3.81872 4.09026 4.17239 4.57818 4.59180 4.81493 5.04294 5.09094 5.14678 5.38951 5.52171 5.67433 5.80755 5.94345 6.06206 6.25810 6.34688 6.39720 6.59661 6.61914 6.64702 6.66948 6.78729 6.86220 7.00648 7.08435 7.19505 7.27358 7.50677 7.66105 7.75455 7.84355 8.26942 8.47745 8.58052 9.53369 9.84834 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.034322 B = 0.002273 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.604085 B =12314.950136 C =12884.045104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.009 3.991 3 N -0.448 5.448 4 C 0.001 3.999 5 C -0.008 4.008 6 C -0.074 4.074 7 C -0.142 4.142 8 C 0.090 3.910 9 O -0.309 6.309 10 C 0.007 3.993 11 C 0.273 3.727 12 F -0.199 7.199 13 F -0.199 7.199 14 C -0.200 4.200 15 C -0.097 4.097 16 C -0.127 4.127 17 C -0.142 4.142 18 C 0.073 3.927 19 C -0.430 4.430 20 H 0.089 0.911 21 C 0.071 3.929 22 N -0.777 5.777 23 Si 0.914 3.086 24 H -0.267 1.267 25 H -0.273 1.273 26 H -0.257 1.257 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.137 0.863 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.081 10.541 1.563 14.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.137 4.137 3 N -0.156 5.156 4 C -0.133 4.133 5 C -0.009 4.009 6 C -0.093 4.093 7 C -0.160 4.160 8 C 0.046 3.954 9 O -0.223 6.223 10 C -0.070 4.070 11 C 0.219 3.781 12 F -0.180 7.180 13 F -0.180 7.180 14 C -0.219 4.219 15 C -0.116 4.116 16 C -0.148 4.148 17 C -0.166 4.166 18 C 0.068 3.932 19 C -0.459 4.459 20 H 0.107 0.893 21 C -0.149 4.149 22 N -0.400 5.400 23 Si 0.737 3.263 24 H -0.192 1.192 25 H -0.198 1.198 26 H -0.181 1.181 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.155 0.845 31 H 0.142 0.858 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.146 0.854 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.118 0.882 38 H 0.144 0.856 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.700 11.385 1.413 14.397 hybrid contribution 0.604 -1.768 0.028 1.869 sum 9.304 9.616 1.441 13.458 Atomic orbital electron populations 1.20262 0.90981 1.01283 1.00403 1.21001 0.95152 0.87970 1.09560 1.66728 1.08604 1.30442 1.09828 1.18671 0.89057 0.90506 1.15059 1.18659 0.91897 0.92353 0.98021 1.21126 1.00661 0.90100 0.97400 1.20315 0.90739 0.98625 1.06351 1.18925 0.92166 0.83096 1.01235 1.86036 1.17975 1.28403 1.89900 1.23892 0.82578 0.95808 1.04688 1.22054 0.97977 0.86352 0.71684 1.93023 1.91339 1.82976 1.50677 1.93022 1.91295 1.82419 1.51287 1.20942 0.99008 0.92263 1.09695 1.20980 0.93921 0.96784 0.99932 1.21277 0.98505 0.93493 1.01499 1.21291 0.94711 0.96611 1.04017 1.18416 0.92535 0.93198 0.89031 1.19687 1.01682 0.91863 1.32656 0.89275 1.26099 0.94195 1.02110 0.92519 1.69790 1.17039 1.32435 1.20784 0.86185 0.79637 0.80044 0.80397 1.19173 1.19784 1.18052 0.93293 0.93117 0.91458 0.84488 0.85780 0.89148 0.89148 0.85399 0.86279 0.85747 0.88190 0.85636 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 9.58 36.01 0.34 -1.11 16 2 C 0.01 0.21 6.86 -81.81 -0.56 -0.35 16 3 N -0.45 -10.77 9.30 -5.40 -0.05 -10.82 16 4 C 0.00 0.03 6.74 -82.76 -0.56 -0.53 16 5 C -0.01 -0.16 5.88 -104.86 -0.62 -0.78 16 6 C -0.07 -1.37 9.57 -39.21 -0.38 -1.74 16 7 C -0.14 -2.33 9.97 -39.48 -0.39 -2.72 16 8 C 0.09 1.39 6.70 -39.03 -0.26 1.13 16 9 O -0.31 -4.34 10.02 -19.06 -0.19 -4.53 16 10 C 0.01 0.07 4.96 37.16 0.18 0.25 16 11 C 0.27 2.19 5.63 37.16 0.21 2.40 16 12 F -0.20 -2.17 17.28 2.25 0.04 -2.13 16 13 F -0.20 -2.16 17.28 2.25 0.04 -2.12 16 14 C -0.20 -2.93 9.02 -39.48 -0.36 -3.29 16 15 C -0.10 -1.65 9.41 -39.21 -0.37 -2.02 16 16 C -0.13 -2.91 9.38 -39.54 -0.37 -3.28 16 17 C -0.14 -3.50 8.73 -39.02 -0.34 -3.84 16 18 C 0.07 1.84 5.58 -106.64 -0.59 1.25 16 19 C -0.43 -10.38 8.14 -37.87 -0.31 -10.69 16 20 H 0.09 2.02 6.86 -52.49 -0.36 1.66 16 21 C 0.07 1.63 5.18 -17.33 -0.09 1.54 16 22 N -0.78 -18.45 10.96 55.55 0.61 -17.85 16 23 Si 0.91 16.97 29.59 -169.99 -5.03 11.94 16 24 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 25 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 26 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.32 6.76 -51.93 -0.35 0.97 16 30 H 0.14 2.56 7.52 -52.49 -0.39 2.16 16 31 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.09 0.67 7.67 -51.93 -0.40 0.27 16 33 H 0.09 0.68 7.64 -51.93 -0.40 0.28 16 34 H 0.13 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.12 1.33 6.28 -52.49 -0.33 1.00 16 36 H 0.12 1.96 6.14 -52.48 -0.32 1.63 16 37 H 0.10 1.98 6.14 -52.49 -0.32 1.66 16 38 H 0.13 3.12 6.27 -52.48 -0.33 2.79 16 39 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 LS Contribution 339.09 15.07 5.11 5.11 Total: -1.00 -29.02 339.09 -7.96 -36.98 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.03 Total: 7.20 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -4.46 Total: -23.78 kcal Atomic # 7 Polarization: -29.23 SS G_CDS: 0.56 Total: -28.67 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.19 Total: -4.53 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.08 Total: -4.25 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.02 -7.96 -36.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244072187.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.463 kcal (2) G-P(sol) polarization free energy of solvation -29.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds