Wall clock time and date at job start Tue Mar 31 2020 12:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31263 * 119.79763 * 2 1 4 4 C 1.33059 * 121.71968 * 180.26801 * 3 2 1 5 5 C 1.47840 * 119.45742 * 179.70717 * 4 3 2 6 6 C 1.39718 * 120.08619 * 359.73305 * 5 4 3 7 7 C 1.37755 * 119.90928 * 180.02562 * 6 5 4 8 8 C 1.38979 * 120.08948 * 359.97438 * 7 6 5 9 9 O 1.35783 * 119.91369 * 180.02562 * 8 7 6 10 10 C 1.42894 * 117.00387 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47567 * 179.97438 * 10 9 8 12 12 F 1.39901 * 109.46916 * 300.00404 * 11 10 9 13 13 F 1.39903 * 109.46742 * 60.00061 * 11 10 9 14 14 C 1.38976 * 120.17649 * 0.27274 * 8 7 6 15 15 C 1.37756 * 120.08757 * 359.45169 * 14 8 7 16 16 C 1.39970 * 121.08779 * 359.43538 * 4 3 2 17 17 C 1.36555 * 119.46148 * 0.27074 * 16 4 3 18 18 C 1.40951 * 119.80153 * 179.70734 * 2 1 3 19 19 C 1.41027 * 120.54670 * 0.03891 * 18 2 1 20 20 H 1.07999 * 120.00266 * 334.63207 * 19 18 2 21 21 C 1.40000 * 119.99911 * 154.62889 * 19 18 2 22 22 N 1.30811 * 120.00056 * 343.58437 * 21 19 18 23 23 Si 1.86796 * 119.99842 * 163.58852 * 21 19 18 24 24 H 1.48506 * 109.47027 * 94.63090 * 23 21 19 25 25 H 1.48499 * 109.47238 * 214.63354 * 23 21 19 26 26 H 1.48498 * 109.47206 * 334.63487 * 23 21 19 27 27 H 1.09006 * 109.46552 * 270.29391 * 1 2 3 28 28 H 1.09000 * 109.47402 * 30.29200 * 1 2 3 29 29 H 1.08997 * 109.47000 * 150.29717 * 1 2 3 30 30 H 1.07998 * 120.04527 * 0.03469 * 6 5 4 31 31 H 1.08000 * 119.95687 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.47344 * 300.00682 * 10 9 8 33 33 H 1.09006 * 109.46581 * 60.00218 * 10 9 8 34 34 H 1.08995 * 109.47244 * 180.02562 * 11 10 9 35 35 H 1.07994 * 119.95572 * 179.70405 * 14 8 7 36 36 H 1.08004 * 120.04653 * 180.29172 * 15 14 8 37 37 H 1.08002 * 120.26619 * 180.29650 * 16 4 3 38 38 H 1.08008 * 120.78490 * 179.97438 * 17 16 4 39 39 H 0.96997 * 120.00013 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1391 0.0000 4 6 3.4891 1.1837 -0.0053 5 6 4.1726 2.4946 -0.0116 6 6 3.4243 3.6746 -0.0176 7 6 4.0649 4.8941 -0.0240 8 6 5.4535 4.9518 -0.0240 9 8 6.0812 6.1558 -0.0297 10 6 7.5101 6.1425 -0.0288 11 6 8.0336 7.5802 -0.0365 12 9 7.5741 8.2376 -1.1827 13 9 7.5727 8.2503 1.1018 14 6 6.2013 3.7804 -0.0232 15 6 5.5683 2.5569 -0.0110 16 6 4.2517 0.0100 0.0007 17 6 3.6206 -1.2009 0.0065 18 6 2.2075 -1.2231 0.0062 19 6 1.5098 -2.4487 0.0117 20 1 0.5080 -2.4980 0.4120 21 6 2.1159 -3.6014 -0.5020 22 7 3.1723 -3.4996 -1.2666 23 14 1.4158 -5.2849 -0.0955 24 1 0.4897 -5.7098 -1.1758 25 1 2.5238 -6.2667 0.0214 26 1 0.6773 -5.2164 1.1910 27 1 -0.3633 0.0053 1.0277 28 1 -0.3634 0.8873 -0.5184 29 1 -0.3633 -0.8926 -0.5092 30 1 2.3452 3.6306 -0.0171 31 1 3.4873 5.8067 -0.0291 32 1 7.8681 5.6298 0.8640 33 1 7.8691 5.6208 -0.9159 34 1 9.1235 7.5700 -0.0362 35 1 7.2802 3.8293 -0.0280 36 1 6.1502 1.6470 -0.0057 37 1 5.3305 0.0617 0.0011 38 1 4.1879 -2.1200 0.0108 39 1 3.5920 -4.2983 -1.6228 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244072187.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:48 Heat of formation + Delta-G solvation = -115.127606 kcal Electronic energy + Delta-G solvation = -24913.883394 eV Core-core repulsion = 20841.906183 eV Total energy + Delta-G solvation = -4071.977211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.88274 -47.94150 -41.15710 -40.32047 -38.31635 -35.99584 -33.86856 -32.73416 -32.17110 -31.36879 -30.13712 -28.73738 -26.62854 -24.81916 -24.11092 -23.31352 -21.94394 -21.67216 -19.60849 -19.25374 -18.45198 -18.13498 -17.77733 -17.39617 -17.00547 -16.53560 -16.50996 -16.10845 -15.55915 -15.07026 -14.99349 -14.80719 -14.68345 -14.37288 -14.31354 -14.18256 -13.80682 -13.72357 -13.44505 -13.36698 -13.22388 -12.95358 -12.93173 -12.66262 -12.52186 -12.19569 -12.02338 -11.97268 -11.74785 -11.54470 -11.21079 -10.21048 -9.94466 -9.91131 -9.77017 -8.83380 -8.60395 -6.37382 0.05821 0.45783 0.95967 1.14817 1.39679 1.51916 1.57698 1.99141 2.16257 2.59260 2.86288 3.00704 3.32432 3.53055 3.71500 3.73856 3.88760 3.98041 4.02517 4.21372 4.29011 4.41042 4.42794 4.49867 4.57933 4.73306 4.77205 4.92567 4.98649 5.01957 5.09868 5.15057 5.25694 5.30658 5.36040 5.51301 5.71737 5.76518 5.87735 5.98964 6.07377 6.39961 6.47956 6.70672 6.78816 7.73349 8.18324 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.034322 B = 0.002273 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.604085 B =12314.950136 C =12884.045104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.016 4.016 3 N -0.465 5.465 4 C -0.002 4.002 5 C -0.048 4.048 6 C -0.080 4.080 7 C -0.153 4.153 8 C 0.105 3.895 9 O -0.326 6.326 10 C -0.009 4.009 11 C 0.267 3.733 12 F -0.219 7.219 13 F -0.219 7.219 14 C -0.191 4.191 15 C -0.092 4.092 16 C -0.136 4.136 17 C -0.161 4.161 18 C 0.041 3.959 19 C -0.458 4.458 20 H 0.094 0.906 21 C 0.034 3.966 22 N -0.811 5.811 23 Si 0.987 3.013 24 H -0.261 1.261 25 H -0.266 1.266 26 H -0.255 1.255 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.124 0.876 31 H 0.137 0.863 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.187 0.813 35 H 0.163 0.837 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.165 11.310 1.785 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.160 4.160 3 N -0.174 5.174 4 C -0.137 4.137 5 C -0.049 4.049 6 C -0.099 4.099 7 C -0.171 4.171 8 C 0.061 3.939 9 O -0.241 6.241 10 C -0.084 4.084 11 C 0.214 3.786 12 F -0.200 7.200 13 F -0.200 7.200 14 C -0.210 4.210 15 C -0.111 4.111 16 C -0.155 4.155 17 C -0.187 4.187 18 C 0.037 3.963 19 C -0.487 4.487 20 H 0.112 0.888 21 C -0.184 4.184 22 N -0.435 5.435 23 Si 0.807 3.193 24 H -0.185 1.185 25 H -0.191 1.191 26 H -0.178 1.178 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.155 0.845 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.204 0.796 35 H 0.181 0.819 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.134 0.866 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.784 12.177 1.633 16.347 hybrid contribution 0.159 -1.696 -0.052 1.704 sum 10.943 10.481 1.581 15.235 Atomic orbital electron populations 1.20242 0.88854 1.01724 1.01358 1.21571 0.96923 0.87906 1.09616 1.66834 1.09389 1.30423 1.10709 1.19281 0.89032 0.92186 1.13156 1.18706 0.93366 0.91189 1.01685 1.21039 1.00178 0.90723 0.97916 1.20442 0.91925 0.98229 1.06537 1.19022 0.91983 0.84151 0.98794 1.86034 1.21146 1.27535 1.89351 1.24426 0.79673 0.97361 1.06976 1.22749 1.00705 0.85016 0.70148 1.92985 1.91842 1.83388 1.51813 1.92985 1.91796 1.82839 1.52382 1.21303 1.01138 0.90699 1.07818 1.21171 0.92725 0.98435 0.98791 1.21544 0.99946 0.92900 1.01157 1.21355 0.94952 0.97007 1.05344 1.18771 0.93141 0.94218 0.90192 1.19909 1.02284 0.92473 1.33994 0.88789 1.26940 0.94308 1.05443 0.91690 1.69833 1.18272 1.33828 1.21562 0.85099 0.78959 0.75124 0.80110 1.18520 1.19065 1.17830 0.91982 0.92223 0.91301 0.85842 0.84537 0.86738 0.86815 0.79604 0.81917 0.84570 0.85555 0.86555 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.67 9.58 71.24 0.68 -1.99 16 2 C -0.02 -0.79 6.86 43.31 0.30 -0.49 16 3 N -0.46 -23.15 9.30 -171.00 -1.59 -24.74 16 4 C 0.00 -0.08 6.74 41.92 0.28 0.20 16 5 C -0.05 -1.92 5.88 -20.02 -0.12 -2.04 16 6 C -0.08 -2.96 9.57 22.51 0.22 -2.74 16 7 C -0.15 -4.86 9.97 22.33 0.22 -4.64 16 8 C 0.11 2.98 6.70 22.62 0.15 3.13 16 9 O -0.33 -8.13 10.02 -91.12 -0.91 -9.05 16 10 C -0.01 -0.12 4.96 71.98 0.36 0.24 16 11 C 0.27 3.26 5.63 71.98 0.41 3.67 16 12 F -0.22 -4.21 17.28 44.97 0.78 -3.43 16 13 F -0.22 -4.18 17.28 44.97 0.78 -3.40 16 14 C -0.19 -4.91 9.02 22.33 0.20 -4.71 16 15 C -0.09 -2.95 9.41 22.51 0.21 -2.74 16 16 C -0.14 -6.32 9.38 22.30 0.21 -6.11 16 17 C -0.16 -8.29 8.73 22.64 0.20 -8.10 16 18 C 0.04 2.17 5.58 -21.17 -0.12 2.06 16 19 C -0.46 -22.83 8.14 23.38 0.19 -22.64 16 20 H 0.09 4.39 6.86 -2.91 -0.02 4.37 16 21 C 0.03 1.56 5.18 85.27 0.44 2.00 16 22 N -0.81 -39.48 10.96 21.84 0.24 -39.24 16 23 Si 0.99 34.90 29.59 68.60 2.03 36.93 16 24 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 25 H -0.27 -9.02 7.11 99.48 0.71 -8.31 16 26 H -0.25 -8.82 7.11 99.48 0.71 -8.12 16 27 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.07 2.78 6.76 -2.39 -0.02 2.76 16 30 H 0.12 4.80 7.52 -2.91 -0.02 4.78 16 31 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 32 H 0.11 1.08 7.67 -2.39 -0.02 1.06 16 33 H 0.11 1.09 7.64 -2.38 -0.02 1.07 16 34 H 0.19 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.16 2.70 6.28 -2.91 -0.02 2.68 16 36 H 0.14 3.96 6.14 -2.91 -0.02 3.94 16 37 H 0.13 4.99 6.14 -2.91 -0.02 4.98 16 38 H 0.12 6.05 6.27 -2.91 -0.02 6.03 16 39 H 0.29 12.81 8.30 -92.71 -0.77 12.04 16 Total: -1.00 -66.37 339.09 6.25 -60.12 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 1.10 Total: 27.71 kcal Atomic # 6 Polarization: -48.73 SS G_CDS: 3.83 Total: -44.90 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -1.35 Total: -63.98 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.91 Total: -9.05 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 1.55 Total: -6.83 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Total: -66.37 6.25 -60.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244072187.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.009 kcal (2) G-P(sol) polarization free energy of solvation -66.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds