Wall clock time and date at job start Tue Mar 31 2020 12:19:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.30718 * 126.36647 * 2 1
4 4 N 1.28420 * 110.65145 * 179.97438 * 3 2 1
5 5 N 1.28945 * 110.21740 * 359.73497 * 4 3 2
6 6 N 1.35128 * 126.36524 * 179.97438 * 2 1 3
7 7 C 1.39974 * 127.39842 * 0.02562 * 6 2 1
8 8 C 1.39110 * 119.89774 * 145.00008 * 7 6 2
9 9 C 1.37659 * 120.15035 * 179.97438 * 8 7 6
10 10 C 1.39768 * 119.94486 * 0.02562 * 9 8 7
11 11 C 1.47550 * 120.09831 * 179.97438 * 10 9 8
12 12 O 1.21590 * 119.99775 * 179.97438 * 11 10 9
13 13 N 1.34778 * 120.00173 * 0.02562 * 11 10 9
14 14 C 1.46499 * 119.99771 * 180.02562 * 13 11 10
15 15 H 1.09002 * 109.47391 * 34.99730 * 14 13 11
16 16 C 1.53002 * 109.46799 * 274.99826 * 14 13 11
17 17 C 1.50701 * 109.46992 * 154.99740 * 14 13 11
18 18 H 1.07998 * 120.00129 * 0.02562 * 17 14 13
19 19 C 1.37880 * 119.99861 * 179.97438 * 17 14 13
20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 14
21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 14
22 22 H 1.48502 * 109.47432 * 0.02562 * 21 19 17
23 23 H 1.48506 * 109.46890 * 120.00210 * 21 19 17
24 24 H 1.48501 * 109.47062 * 240.00257 * 21 19 17
25 25 C 1.39927 * 119.79659 * 0.25596 * 10 9 8
26 26 F 1.35102 * 120.07667 * 179.72951 * 25 10 9
27 27 C 1.38113 * 119.84309 * 359.44319 * 25 10 9
28 28 H 1.09010 * 109.47305 * 270.04595 * 1 2 3
29 29 H 1.09001 * 109.47476 * 30.03755 * 1 2 3
30 30 H 1.08998 * 109.47123 * 150.04098 * 1 2 3
31 31 H 1.08000 * 119.92740 * 0.02562 * 8 7 6
32 32 H 1.08001 * 120.02345 * 180.02562 * 9 8 7
33 33 H 0.96998 * 119.99599 * 359.97438 * 13 11 10
34 34 H 1.09002 * 109.47075 * 299.99543 * 16 14 13
35 35 H 1.08996 * 109.47407 * 60.00500 * 16 14 13
36 36 H 1.09000 * 109.46986 * 180.02562 * 16 14 13
37 37 H 0.97002 * 119.99768 * 179.97438 * 20 19 17
38 38 H 1.08005 * 119.97219 * 180.27801 * 27 25 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2821 1.0526 0.0000
4 7 3.5183 0.7048 0.0005
5 7 3.6195 -0.5807 0.0065
6 7 2.3082 -1.0881 0.0005
7 6 1.9168 -2.4320 0.0006
8 6 2.6717 -3.3741 -0.6907
9 6 2.2919 -4.6973 -0.6936
10 6 1.1450 -5.0954 -0.0011
11 6 0.7344 -6.5127 -0.0024
12 8 -0.2634 -6.8571 0.6010
13 7 1.4660 -7.4256 -0.6717
14 6 1.0580 -8.8326 -0.6735
15 1 -0.0302 -8.8954 -0.6749
16 6 1.6070 -9.5243 0.5760
17 6 1.6020 -9.5118 -1.9038
18 1 2.1929 -8.9516 -2.6132
19 6 1.3462 -10.8488 -2.1232
20 7 0.6270 -11.5311 -1.2591
21 14 2.0211 -11.6908 -3.6479
22 1 2.7925 -10.7109 -4.4542
23 1 2.9116 -12.8082 -3.2430
24 1 0.8963 -12.2230 -4.4584
25 6 0.3841 -4.1450 0.6886
26 9 -0.7286 -4.5227 1.3554
27 6 0.7765 -2.8208 0.6910
28 1 -0.3634 0.0008 1.0277
29 1 -0.3634 0.8896 -0.5144
30 1 -0.3633 -0.8903 -0.5132
31 1 3.5582 -3.0669 -1.2256
32 1 2.8796 -5.4270 -1.2306
33 1 2.2622 -7.1508 -1.1528
34 1 2.6952 -9.4616 0.5774
35 1 1.2135 -9.0331 1.4658
36 1 1.3038 -10.5713 0.5745
37 1 0.4467 -12.4716 -1.4137
38 1 0.1932 -2.0861 1.2264
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001362270227.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:19:28
Heat of formation + Delta-G solvation = 68.657487 kcal
Electronic energy + Delta-G solvation = -25701.678571 eV
Core-core repulsion = 21689.883593 eV
Total energy + Delta-G solvation = -4011.794978 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 319.119 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-49.07289 -43.63925 -40.13495 -38.62058 -35.55565 -34.98696 -33.76641 -32.65165
-31.35842 -30.83304 -29.33789 -28.73636 -25.58125 -25.32613 -23.95580 -22.85949
-22.02354 -21.37185 -19.85105 -19.09550 -18.19757 -17.41221 -16.65949 -16.36128
-16.02209 -15.91596 -15.46127 -15.29982 -15.11671 -14.46528 -14.25544 -14.17493
-13.92412 -13.75873 -13.46736 -13.26367 -13.03324 -12.84195 -12.53584 -12.45897
-11.99242 -11.84115 -11.50431 -11.40533 -11.18897 -11.05235 -10.86349 -10.60722
-10.40657 -10.33781 -9.56573 -9.41507 -9.17441 -9.10000 -8.66770 -8.11247
-6.22170 -4.32362 -0.24733 0.59631 0.80896 1.24628 1.82182 2.60645
3.17596 3.25568 3.27578 3.37522 3.57792 3.64712 3.70959 3.92394
4.14087 4.26033 4.30540 4.38796 4.59255 4.71951 4.81367 4.85907
4.91756 4.97939 5.10797 5.22110 5.40058 5.45949 5.59669 5.67210
5.84116 6.23295 6.70975 6.83609 7.01874 7.24482 7.39267 7.56631
7.77889 7.98629 8.02909 8.41923 8.62037 8.85772 9.35268 10.83839
Molecular weight = 319.12amu
Principal moments of inertia in cm(-1)
A = 0.023202 B = 0.002779 C = 0.002585
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1206.519944 B =10074.596363 C =10827.162935
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.088 4.088
2 C 0.257 3.743
3 N -0.330 5.330
4 N -0.033 5.033
5 N -0.072 5.072
6 N -0.332 5.332
7 C 0.166 3.834
8 C -0.113 4.113
9 C -0.040 4.040
10 C -0.141 4.141
11 C 0.538 3.462
12 O -0.531 6.531
13 N -0.695 5.695
14 C 0.264 3.736
15 H 0.052 0.948
16 C -0.148 4.148
17 C -0.537 4.537
18 H 0.063 0.937
19 C 0.067 3.933
20 N -0.881 5.881
21 Si 0.903 3.097
22 H -0.272 1.272
23 H -0.282 1.282
24 H -0.282 1.282
25 C 0.179 3.821
26 F -0.101 7.101
27 C -0.167 4.167
28 H 0.105 0.895
29 H 0.110 0.890
30 H 0.096 0.904
31 H 0.149 0.851
32 H 0.156 0.844
33 H 0.388 0.612
34 H 0.028 0.972
35 H 0.016 0.984
36 H 0.092 0.908
37 H 0.265 0.735
38 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.833 19.140 1.566 19.222
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.019 4.019
3 N -0.180 5.180
4 N -0.027 5.027
5 N -0.056 5.056
6 N -0.123 5.123
7 C 0.073 3.927
8 C -0.133 4.133
9 C -0.060 4.060
10 C -0.146 4.146
11 C 0.321 3.679
12 O -0.410 6.410
13 N -0.343 5.343
14 C 0.163 3.837
15 H 0.070 0.930
16 C -0.207 4.207
17 C -0.575 4.575
18 H 0.081 0.919
19 C -0.136 4.136
20 N -0.519 5.519
21 Si 0.730 3.270
22 H -0.197 1.197
23 H -0.208 1.208
24 H -0.208 1.208
25 C 0.157 3.843
26 F -0.078 7.078
27 C -0.188 4.188
28 H 0.123 0.877
29 H 0.129 0.871
30 H 0.115 0.885
31 H 0.167 0.833
32 H 0.173 0.827
33 H 0.222 0.778
34 H 0.047 0.953
35 H 0.035 0.965
36 H 0.111 0.889
37 H 0.075 0.925
38 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges 1.284 19.356 2.046 19.507
hybrid contribution 0.007 -1.022 -0.864 1.338
sum 1.291 18.335 1.183 18.418
Atomic orbital electron populations
1.20756 0.81873 1.06497 1.05648 1.25974 0.98376 0.82161 0.95361
1.74498 0.96276 1.24568 1.22706 1.78058 1.11380 1.03953 1.09335
1.82757 0.96511 1.04886 1.21441 1.48835 1.06123 1.06301 1.51081
1.17143 0.96093 0.79472 0.99977 1.20983 1.00768 0.91979 0.99561
1.21274 0.94004 0.95474 0.95203 1.20790 0.97065 0.95919 1.00853
1.17835 0.84592 0.84101 0.81329 1.90834 1.25797 1.80620 1.43716
1.46523 1.27654 1.10504 1.49668 1.18854 0.97056 0.73287 0.94497
0.92999 1.22094 0.98413 1.03990 0.96205 1.21211 1.34819 0.95223
1.06287 0.91920 1.24886 0.94767 0.97091 0.96888 1.69904 1.37629
1.09189 1.35130 0.86376 0.78758 0.79458 0.82404 1.19692 1.20808
1.20812 1.17175 0.84194 0.90725 0.92215 1.91663 1.47879 1.91547
1.76751 1.20837 0.98706 0.95881 1.03426 0.87674 0.87137 0.88519
0.83301 0.82682 0.77777 0.95302 0.96501 0.88916 0.92483 0.82976
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.38 8.73 36.01 0.31 -0.06 16
2 C 0.26 2.31 7.97 -155.16 -1.24 1.07 16
3 N -0.33 -3.84 12.15 32.76 0.40 -3.44 16
4 N -0.03 -0.43 13.39 60.35 0.81 0.38 16
5 N -0.07 -0.89 13.75 60.35 0.83 -0.06 16
6 N -0.33 -3.40 3.77 -7.95 -0.03 -3.43 16
7 C 0.17 1.57 6.35 -83.59 -0.53 1.04 16
8 C -0.11 -1.02 9.79 -39.47 -0.39 -1.41 16
9 C -0.04 -0.40 9.53 -39.22 -0.37 -0.78 16
10 C -0.14 -1.91 5.88 -104.90 -0.62 -2.53 16
11 C 0.54 9.99 7.73 -12.46 -0.10 9.89 16
12 O -0.53 -12.08 14.99 5.29 0.08 -12.00 16
13 N -0.70 -13.23 5.02 -55.97 -0.28 -13.51 16
14 C 0.26 6.34 2.56 -69.08 -0.18 6.16 16
15 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16
16 C -0.15 -3.52 9.26 37.16 0.34 -3.18 16
17 C -0.54 -13.45 8.73 -34.44 -0.30 -13.75 16
18 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16
19 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16
20 N -0.88 -23.93 11.32 55.43 0.63 -23.30 16
21 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16
22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16
23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
25 C 0.18 2.21 7.28 -38.99 -0.28 1.93 16
26 F -0.10 -1.49 15.54 2.25 0.03 -1.46 16
27 C -0.17 -1.51 8.37 -39.40 -0.33 -1.84 16
28 H 0.10 0.26 7.83 -51.92 -0.41 -0.14 16
29 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16
30 H 0.10 0.34 7.02 -51.93 -0.36 -0.02 16
31 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16
32 H 0.16 1.28 6.39 -52.49 -0.34 0.95 16
33 H 0.39 6.06 6.56 -40.82 -0.27 5.80 16
34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
35 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16
36 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16
37 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16
38 H 0.15 0.97 6.24 -52.48 -0.33 0.64 16
LS Contribution 334.48 15.07 5.04 5.04
Total: -1.00 -32.19 334.48 -4.92 -37.11
By element:
Atomic # 1 Polarization: 5.33 SS G_CDS: -3.64 Total: 1.69 kcal
Atomic # 6 Polarization: 1.95 SS G_CDS: -3.77 Total: -1.81 kcal
Atomic # 7 Polarization: -45.71 SS G_CDS: 2.35 Total: -43.35 kcal
Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -12.00 kcal
Atomic # 9 Polarization: -1.49 SS G_CDS: 0.03 Total: -1.46 kcal
Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal
Total LS contribution 5.04 Total: 5.04 kcal
Total: -32.19 -4.92 -37.11 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362270227.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.769 kcal
(2) G-P(sol) polarization free energy of solvation -32.187 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.582 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.924 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal
(6) G-S(sol) free energy of system = (1) + (5) 68.657 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds