Wall clock time and date at job start Tue Mar 31 2020 12:19:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.30718 * 126.36647 * 2 1
4 4 N 1.28420 * 110.65145 * 179.97438 * 3 2 1
5 5 N 1.28945 * 110.21740 * 359.73497 * 4 3 2
6 6 N 1.35128 * 126.36524 * 179.97438 * 2 1 3
7 7 C 1.39974 * 127.39842 * 0.02562 * 6 2 1
8 8 C 1.39110 * 119.89774 * 145.00008 * 7 6 2
9 9 C 1.37659 * 120.15035 * 179.97438 * 8 7 6
10 10 C 1.39768 * 119.94486 * 0.02562 * 9 8 7
11 11 C 1.47550 * 120.09831 * 179.97438 * 10 9 8
12 12 O 1.21590 * 119.99775 * 179.97438 * 11 10 9
13 13 N 1.34778 * 120.00173 * 0.02562 * 11 10 9
14 14 C 1.46499 * 119.99771 * 180.02562 * 13 11 10
15 15 H 1.09002 * 109.47391 * 34.99730 * 14 13 11
16 16 C 1.53002 * 109.46799 * 274.99826 * 14 13 11
17 17 C 1.50701 * 109.46992 * 154.99740 * 14 13 11
18 18 H 1.07998 * 120.00129 * 0.02562 * 17 14 13
19 19 C 1.37880 * 119.99861 * 179.97438 * 17 14 13
20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 14
21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 14
22 22 H 1.48502 * 109.47432 * 0.02562 * 21 19 17
23 23 H 1.48506 * 109.46890 * 120.00210 * 21 19 17
24 24 H 1.48501 * 109.47062 * 240.00257 * 21 19 17
25 25 C 1.39927 * 119.79659 * 0.25596 * 10 9 8
26 26 F 1.35102 * 120.07667 * 179.72951 * 25 10 9
27 27 C 1.38113 * 119.84309 * 359.44319 * 25 10 9
28 28 H 1.09010 * 109.47305 * 270.04595 * 1 2 3
29 29 H 1.09001 * 109.47476 * 30.03755 * 1 2 3
30 30 H 1.08998 * 109.47123 * 150.04098 * 1 2 3
31 31 H 1.08000 * 119.92740 * 0.02562 * 8 7 6
32 32 H 1.08001 * 120.02345 * 180.02562 * 9 8 7
33 33 H 0.96998 * 119.99599 * 359.97438 * 13 11 10
34 34 H 1.09002 * 109.47075 * 299.99543 * 16 14 13
35 35 H 1.08996 * 109.47407 * 60.00500 * 16 14 13
36 36 H 1.09000 * 109.46986 * 180.02562 * 16 14 13
37 37 H 0.97002 * 119.99768 * 179.97438 * 20 19 17
38 38 H 1.08005 * 119.97219 * 180.27801 * 27 25 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2821 1.0526 0.0000
4 7 3.5183 0.7048 0.0005
5 7 3.6195 -0.5807 0.0065
6 7 2.3082 -1.0881 0.0005
7 6 1.9168 -2.4320 0.0006
8 6 2.6717 -3.3741 -0.6907
9 6 2.2919 -4.6973 -0.6936
10 6 1.1450 -5.0954 -0.0011
11 6 0.7344 -6.5127 -0.0024
12 8 -0.2634 -6.8571 0.6010
13 7 1.4660 -7.4256 -0.6717
14 6 1.0580 -8.8326 -0.6735
15 1 -0.0302 -8.8954 -0.6749
16 6 1.6070 -9.5243 0.5760
17 6 1.6020 -9.5118 -1.9038
18 1 2.1929 -8.9516 -2.6132
19 6 1.3462 -10.8488 -2.1232
20 7 0.6270 -11.5311 -1.2591
21 14 2.0211 -11.6908 -3.6479
22 1 2.7925 -10.7109 -4.4542
23 1 2.9116 -12.8082 -3.2430
24 1 0.8963 -12.2230 -4.4584
25 6 0.3841 -4.1450 0.6886
26 9 -0.7286 -4.5227 1.3554
27 6 0.7765 -2.8208 0.6910
28 1 -0.3634 0.0008 1.0277
29 1 -0.3634 0.8896 -0.5144
30 1 -0.3633 -0.8903 -0.5132
31 1 3.5582 -3.0669 -1.2256
32 1 2.8796 -5.4270 -1.2306
33 1 2.2622 -7.1508 -1.1528
34 1 2.6952 -9.4616 0.5774
35 1 1.2135 -9.0331 1.4658
36 1 1.3038 -10.5713 0.5745
37 1 0.4467 -12.4716 -1.4137
38 1 0.1932 -2.0861 1.2264
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001362270227.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:19:28
Heat of formation + Delta-G solvation = 47.174481 kcal
Electronic energy + Delta-G solvation = -25702.610144 eV
Core-core repulsion = 21689.883593 eV
Total energy + Delta-G solvation = -4012.726552 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 319.119 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-50.10308 -44.44736 -41.25136 -39.89414 -36.80090 -36.41520 -34.49487 -34.39553
-32.38463 -31.83031 -30.48760 -29.78240 -27.35217 -26.49822 -24.79485 -24.01321
-22.79529 -22.74683 -21.42767 -19.98874 -19.58969 -18.33307 -17.86720 -17.50201
-17.30376 -16.97749 -16.82904 -16.44561 -16.12569 -15.83159 -15.59207 -15.01935
-14.88353 -14.72122 -14.42714 -14.23950 -14.12621 -13.88526 -13.71688 -13.61689
-13.21711 -13.00107 -12.91781 -12.79613 -12.73457 -12.36021 -12.28021 -12.21301
-12.11102 -11.35960 -11.10877 -10.97322 -10.61305 -10.38488 -10.09475 -9.77659
-8.17803 -6.35262 -1.11335 -0.21744 -0.03930 0.47248 1.01753 1.45895
1.47517 1.58389 1.59413 2.22347 2.40016 2.47922 2.77019 2.83111
3.13680 3.14360 3.43860 3.52044 3.54544 3.69380 3.77956 4.09546
4.17483 4.47628 4.50383 4.58454 4.66522 4.69981 4.75957 4.82524
4.87465 4.92118 5.07891 5.12294 5.39657 5.42285 5.56030 5.66274
5.86587 6.07987 6.71281 6.81834 7.16100 7.28090 7.43233 8.88820
Molecular weight = 319.12amu
Principal moments of inertia in cm(-1)
A = 0.023202 B = 0.002779 C = 0.002585
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1206.519944 B =10074.596363 C =10827.162935
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.093 4.093
2 C 0.270 3.730
3 N -0.352 5.352
4 N -0.052 5.052
5 N -0.089 5.089
6 N -0.337 5.337
7 C 0.173 3.827
8 C -0.102 4.102
9 C -0.024 4.024
10 C -0.161 4.161
11 C 0.536 3.464
12 O -0.582 6.582
13 N -0.691 5.691
14 C 0.271 3.729
15 H 0.002 0.998
16 C -0.136 4.136
17 C -0.545 4.545
18 H 0.079 0.921
19 C 0.015 3.985
20 N -0.918 5.918
21 Si 0.972 3.028
22 H -0.257 1.257
23 H -0.281 1.281
24 H -0.286 1.286
25 C 0.165 3.835
26 F -0.120 7.120
27 C -0.143 4.143
28 H 0.131 0.869
29 H 0.127 0.873
30 H 0.109 0.891
31 H 0.168 0.832
32 H 0.175 0.825
33 H 0.407 0.593
34 H 0.043 0.957
35 H 0.012 0.988
36 H 0.067 0.933
37 H 0.265 0.735
38 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.910 21.068 0.396 21.158
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.005 4.005
3 N -0.203 5.203
4 N -0.046 5.046
5 N -0.073 5.073
6 N -0.128 5.128
7 C 0.080 3.920
8 C -0.122 4.122
9 C -0.043 4.043
10 C -0.166 4.166
11 C 0.323 3.677
12 O -0.464 6.464
13 N -0.340 5.340
14 C 0.168 3.832
15 H 0.020 0.980
16 C -0.195 4.195
17 C -0.583 4.583
18 H 0.097 0.903
19 C -0.186 4.186
20 N -0.556 5.556
21 Si 0.797 3.203
22 H -0.180 1.180
23 H -0.207 1.207
24 H -0.212 1.212
25 C 0.144 3.856
26 F -0.098 7.098
27 C -0.164 4.164
28 H 0.149 0.851
29 H 0.145 0.855
30 H 0.127 0.873
31 H 0.185 0.815
32 H 0.192 0.808
33 H 0.244 0.756
34 H 0.062 0.938
35 H 0.031 0.969
36 H 0.086 0.914
37 H 0.074 0.926
38 H 0.201 0.799
Dipole moment (debyes) X Y Z Total
from point charges 2.397 21.329 0.859 21.481
hybrid contribution -0.366 -1.489 -0.473 1.605
sum 2.031 19.840 0.386 19.948
Atomic orbital electron populations
1.21132 0.78490 1.07945 1.07635 1.26809 0.99800 0.81026 0.92854
1.74464 0.96167 1.25815 1.23883 1.78044 1.12359 1.04340 1.09908
1.82705 0.97672 1.04779 1.22186 1.48853 1.05853 1.06619 1.51463
1.17249 0.95941 0.79376 0.99407 1.21156 1.00965 0.91208 0.98857
1.21364 0.92555 0.96350 0.94069 1.20373 0.99385 0.92839 1.04011
1.18488 0.83458 0.86012 0.79707 1.90802 1.27956 1.81966 1.45670
1.46182 1.28579 1.08891 1.50395 1.18412 0.94165 0.76060 0.94585
0.98001 1.21923 0.99146 1.02355 0.96078 1.21566 1.34543 0.95537
1.06689 0.90328 1.25789 0.95008 0.97971 0.99784 1.70057 1.39012
1.09430 1.37085 0.85300 0.77910 0.78432 0.78707 1.18019 1.20670
1.21203 1.17363 0.83861 0.91785 0.92593 1.91616 1.48993 1.91903
1.77325 1.20910 0.98354 0.94795 1.02379 0.85141 0.85469 0.87291
0.81482 0.80805 0.75584 0.93764 0.96915 0.91402 0.92559 0.79938
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.42 8.73 71.24 0.62 0.20 16
2 C 0.27 4.04 7.97 138.04 1.10 5.14 16
3 N -0.35 -7.49 12.15 -50.27 -0.61 -8.10 16
4 N -0.05 -1.28 13.39 37.02 0.50 -0.79 16
5 N -0.09 -2.02 13.75 37.02 0.51 -1.51 16
6 N -0.34 -5.89 3.77 -179.07 -0.67 -6.57 16
7 C 0.17 2.71 6.35 38.20 0.24 2.95 16
8 C -0.10 -1.51 9.79 22.34 0.22 -1.29 16
9 C -0.02 -0.43 9.53 22.50 0.21 -0.21 16
10 C -0.16 -4.19 5.88 -20.04 -0.12 -4.31 16
11 C 0.54 20.24 7.73 86.70 0.67 20.91 16
12 O -0.58 -27.69 14.99 -4.00 -0.06 -27.75 16
13 N -0.69 -26.33 5.02 -449.25 -2.25 -28.58 16
14 C 0.27 13.35 2.56 44.25 0.11 13.46 16
15 H 0.00 0.12 7.58 -2.39 -0.02 0.10 16
16 C -0.14 -6.64 9.26 71.98 0.67 -5.98 16
17 C -0.55 -27.24 8.73 25.60 0.22 -27.02 16
18 H 0.08 3.59 7.74 -2.91 -0.02 3.56 16
19 C 0.01 0.76 5.30 84.66 0.45 1.21 16
20 N -0.92 -51.10 11.32 21.45 0.24 -50.86 16
21 Si 0.97 40.24 29.54 68.60 2.03 42.27 16
22 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16
23 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16
24 H -0.29 -11.94 7.11 99.48 0.71 -11.23 16
25 C 0.17 3.87 7.28 22.65 0.16 4.04 16
26 F -0.12 -3.56 15.54 44.97 0.70 -2.86 16
27 C -0.14 -2.16 8.37 22.39 0.19 -1.98 16
28 H 0.13 0.04 7.83 -2.38 -0.02 0.02 16
29 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16
30 H 0.11 0.30 7.02 -2.39 -0.02 0.29 16
31 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16
32 H 0.17 2.33 6.39 -2.91 -0.02 2.31 16
33 H 0.41 12.14 6.56 -92.71 -0.61 11.53 16
34 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16
35 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16
36 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16
37 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16
38 H 0.18 1.58 6.24 -2.91 -0.02 1.56 16
Total: -1.00 -73.59 334.48 5.66 -67.93
By element:
Atomic # 1 Polarization: 9.17 SS G_CDS: 0.53 Total: 9.71 kcal
Atomic # 6 Polarization: 2.37 SS G_CDS: 4.75 Total: 7.12 kcal
Atomic # 7 Polarization: -94.12 SS G_CDS: -2.29 Total: -96.41 kcal
Atomic # 8 Polarization: -27.69 SS G_CDS: -0.06 Total: -27.75 kcal
Atomic # 9 Polarization: -3.56 SS G_CDS: 0.70 Total: -2.86 kcal
Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal
Total: -73.59 5.66 -67.93 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362270227.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.105 kcal
(2) G-P(sol) polarization free energy of solvation -73.590 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.515 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.660 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.930 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.174 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds