Wall clock time and date at job start Tue Mar 31 2020 12:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29998 * 127.33913 * 2 1 4 4 O 1.20662 * 112.31963 * 179.97438 * 3 2 1 5 5 C 1.33463 * 113.17716 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.83528 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47466 * 300.02746 * 6 5 4 8 8 C 1.52999 * 109.46961 * 60.03097 * 6 5 4 9 9 C 1.37440 * 106.32862 * 0.23931 * 5 4 3 10 10 C 1.47254 * 128.57462 * 179.73667 * 9 5 4 11 11 O 1.21523 * 120.00002 * 89.99971 * 10 9 5 12 12 O 1.34763 * 119.99682 * 269.99790 * 10 9 5 13 13 C 1.45209 * 116.99871 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.46640 * 29.99675 * 13 12 10 15 15 C 1.50693 * 109.47327 * 150.00320 * 13 12 10 16 16 H 1.08004 * 119.99735 * 359.97438 * 15 13 12 17 17 C 1.37875 * 120.00283 * 180.02562 * 15 13 12 18 18 N 1.31517 * 119.99916 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00256 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47256 * 59.99520 * 19 17 15 21 21 H 1.48496 * 109.47162 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47132 * 299.99624 * 19 17 15 23 23 C 1.50699 * 109.46916 * 270.00143 * 13 12 10 24 24 C 1.34517 * 125.78824 * 144.71479 * 23 13 12 25 25 C 1.41382 * 106.84158 * 179.88933 * 24 23 13 26 26 C 1.34511 * 106.84071 * 0.37370 * 25 24 23 27 27 O 1.34305 * 125.79322 * 325.02266 * 23 13 12 28 28 H 1.08999 * 109.46832 * 89.97591 * 1 2 3 29 29 H 1.08996 * 109.47250 * 209.97835 * 1 2 3 30 30 H 1.09000 * 109.47201 * 329.97951 * 1 2 3 31 31 H 1.09002 * 109.47120 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 33 33 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 34 34 H 1.09004 * 109.47261 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.46716 * 299.99650 * 8 6 5 36 36 H 1.09000 * 109.47486 * 59.99568 * 8 6 5 37 37 H 1.09001 * 109.47362 * 180.02562 * 8 6 5 38 38 H 0.97000 * 120.00317 * 180.02562 * 18 17 15 39 39 H 1.08001 * 126.58044 * 0.02562 * 24 23 13 40 40 H 1.07997 * 126.58198 * 180.16467 * 25 24 23 41 41 H 1.07999 * 125.79257 * 179.75308 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4609 0.7209 0.0005 5 6 3.6503 -0.6002 0.0004 6 6 4.9724 -1.3234 0.0003 7 6 5.7663 -0.9348 -1.2484 8 6 5.7655 -0.9361 1.2500 9 6 2.3995 -1.1699 -0.0058 10 6 2.0411 -2.5981 -0.0138 11 8 1.8904 -3.1927 1.0353 12 8 1.8802 -3.2458 -1.1846 13 6 1.5265 -4.6525 -1.1165 14 1 0.9485 -4.8384 -0.2113 15 6 0.7031 -5.0224 -2.3232 16 1 0.4687 -4.2750 -3.0667 17 6 0.2481 -6.3148 -2.4776 18 7 0.5332 -7.2249 -1.5720 19 14 -0.7731 -6.7731 -3.9730 20 1 0.0141 -6.5201 -5.2065 21 1 -1.1347 -8.2117 -3.9034 22 1 -2.0102 -5.9520 -3.9982 23 6 2.7821 -5.4855 -1.0907 24 6 2.9512 -6.6326 -0.4087 25 6 4.2691 -7.0734 -0.6691 26 6 4.8292 -6.1651 -1.4879 27 8 3.9239 -5.2055 -1.7400 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5141 31 1 4.7980 -2.3994 -0.0002 32 1 5.9407 0.1412 -1.2479 33 1 5.2012 -1.2108 -2.1387 34 1 6.7228 -1.4576 -1.2482 35 1 5.9399 0.1399 1.2506 36 1 5.1999 -1.2129 2.1397 37 1 6.7221 -1.4588 1.2498 38 1 0.2135 -8.1342 -1.6807 39 1 2.2199 -7.1238 0.2159 40 1 4.7375 -7.9662 -0.2818 41 1 5.8362 -6.2010 -1.8765 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526991585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:59 Heat of formation + Delta-G solvation = -19.860887 kcal Electronic energy + Delta-G solvation = -27608.409024 eV Core-core repulsion = 23651.650404 eV Total energy + Delta-G solvation = -3956.758620 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.81798 -41.41294 -39.50516 -36.18898 -35.79896 -34.49754 -33.36419 -31.75057 -31.01666 -29.67717 -28.73577 -27.29476 -26.80076 -25.04405 -22.94061 -22.91181 -20.94428 -20.47945 -19.57708 -19.17666 -17.82437 -17.59532 -16.92049 -16.73044 -16.22413 -15.60547 -15.43599 -14.89100 -14.69483 -14.52840 -14.08175 -13.45617 -13.29090 -13.23132 -13.11167 -12.86306 -12.77453 -12.32358 -12.13260 -11.86970 -11.65479 -11.58106 -11.42007 -11.39059 -11.35201 -11.20001 -11.01306 -10.86543 -10.48489 -10.25383 -10.09866 -9.82450 -9.53632 -9.34143 -8.89065 -8.69428 -7.31818 -6.27450 -4.47055 1.35487 1.95761 2.47243 2.75700 2.87370 3.19472 3.23191 3.24906 3.48643 3.88139 4.10512 4.14753 4.20131 4.29082 4.75295 4.85854 4.91876 5.00230 5.18684 5.38226 5.40885 5.50293 5.53657 5.66100 5.67668 5.68352 5.75324 5.79633 5.90183 6.01511 6.08258 6.10136 6.13625 6.30806 6.57327 6.92181 7.06323 7.17019 7.25398 7.61146 7.65433 7.74445 8.23165 8.25553 8.38741 8.67711 9.20137 10.70055 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.013128 B = 0.005046 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.369565 B = 5547.293749 C = 6872.323399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.063 3.937 3 N -0.359 5.359 4 O 0.098 5.902 5 C 0.032 3.968 6 C -0.018 4.018 7 C -0.147 4.147 8 C -0.148 4.148 9 C -0.220 4.220 10 C 0.541 3.459 11 O -0.495 6.495 12 O -0.335 6.335 13 C 0.299 3.701 14 H 0.080 0.920 15 C -0.531 4.531 16 H 0.078 0.922 17 C 0.071 3.929 18 N -0.867 5.867 19 Si 0.915 3.085 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.018 3.982 24 C -0.173 4.173 25 C -0.218 4.218 26 C -0.088 4.088 27 O -0.178 6.178 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.270 0.730 39 H 0.146 0.854 40 H 0.131 0.869 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.734 9.481 2.736 12.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 N -0.067 5.067 4 O 0.037 5.963 5 C -0.031 4.031 6 C -0.038 4.038 7 C -0.205 4.205 8 C -0.205 4.205 9 C -0.226 4.226 10 C 0.382 3.618 11 O -0.384 6.384 12 O -0.251 6.251 13 C 0.246 3.754 14 H 0.097 0.903 15 C -0.568 4.568 16 H 0.096 0.904 17 C -0.135 4.135 18 N -0.501 5.501 19 Si 0.741 3.259 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.033 4.033 24 C -0.193 4.193 25 C -0.237 4.237 26 C -0.156 4.156 27 O -0.075 6.075 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.164 0.836 40 H 0.149 0.851 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 7.500 10.612 2.897 13.314 hybrid contribution -0.559 -1.789 -0.680 1.994 sum 6.941 8.823 2.217 11.443 Atomic orbital electron populations 1.20271 0.84913 1.04236 1.04272 1.24709 0.98660 0.86163 1.00391 1.73575 0.89110 1.23188 1.20826 1.84467 1.21404 1.22312 1.68093 1.24587 0.96732 0.83549 0.98210 1.19950 0.86851 0.99029 0.97926 1.21868 1.00141 1.02139 0.96319 1.21879 1.00133 1.02317 0.96196 1.21160 0.93034 0.93258 1.15127 1.19569 0.73790 0.85133 0.83324 1.90846 1.46243 1.67861 1.33400 1.86719 1.78272 1.28777 1.31295 1.19284 0.85893 0.69035 1.01199 0.90276 1.20836 1.32336 0.96438 1.07226 0.90385 1.24928 0.95771 0.95468 0.97347 1.70011 1.42876 1.03360 1.33890 0.86271 0.80192 0.77503 0.81907 1.19824 1.20854 1.19656 1.23526 0.85863 0.99978 0.93942 1.21304 0.95487 0.97315 1.05147 1.21720 0.96450 1.01439 1.04101 1.23607 0.95279 0.91685 1.05023 1.83988 1.20908 1.44102 1.58494 0.89154 0.89506 0.89959 0.87677 0.91767 0.91485 0.90976 0.91670 0.91903 0.90949 0.91987 0.83636 0.85119 0.79864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.49 36.01 0.38 -0.65 16 2 C 0.06 1.01 7.59 -79.75 -0.61 0.40 16 3 N -0.36 -5.67 12.01 34.79 0.42 -5.25 16 4 O 0.10 1.45 11.06 18.73 0.21 1.66 16 5 C 0.03 0.50 6.06 -34.60 -0.21 0.29 16 6 C -0.02 -0.23 3.33 -91.78 -0.31 -0.54 16 7 C -0.15 -1.57 9.18 37.16 0.34 -1.23 16 8 C -0.15 -1.51 9.18 37.16 0.34 -1.17 16 9 C -0.22 -3.95 6.37 -102.91 -0.66 -4.61 16 10 C 0.54 11.53 7.41 34.39 0.25 11.78 16 11 O -0.50 -11.56 16.37 -19.28 -0.32 -11.87 16 12 O -0.34 -7.90 9.85 -43.47 -0.43 -8.33 16 13 C 0.30 7.71 2.42 -29.04 -0.07 7.64 16 14 H 0.08 2.17 7.16 -51.93 -0.37 1.80 16 15 C -0.53 -14.29 8.89 -34.44 -0.31 -14.59 16 16 H 0.08 2.07 7.81 -52.48 -0.41 1.66 16 17 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 18 N -0.87 -23.21 10.50 55.43 0.58 -22.63 16 19 Si 0.92 20.41 29.54 -169.99 -5.02 15.39 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 C 0.02 0.45 5.67 -35.62 -0.20 0.24 16 24 C -0.17 -4.17 9.05 -39.70 -0.36 -4.53 16 25 C -0.22 -4.46 10.91 -39.70 -0.43 -4.89 16 26 C -0.09 -1.73 12.09 29.41 0.36 -1.37 16 27 O -0.18 -4.16 10.63 2.02 0.02 -4.14 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.11 1.56 7.71 -51.93 -0.40 1.15 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.15 3.62 7.51 -52.49 -0.39 3.23 16 40 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 41 H 0.18 2.66 8.06 -52.49 -0.42 2.23 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -30.49 363.08 -6.00 -36.49 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.36 Total: 4.67 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -1.57 Total: -11.46 kcal Atomic # 7 Polarization: -28.88 SS G_CDS: 1.00 Total: -27.88 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.52 Total: -22.68 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.49 -6.00 -36.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526991585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.627 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds