Wall clock time and date at job start Tue Mar 31 2020 12:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34234 * 126.52541 * 2 1 4 4 C 1.34057 * 108.23957 * 180.25779 * 3 2 1 5 5 C 1.50696 * 125.36932 * 179.80219 * 4 3 2 6 6 C 1.53008 * 109.47033 * 119.98810 * 5 4 3 7 7 C 1.53008 * 109.47068 * 239.98333 * 5 4 3 8 8 N 1.29921 * 109.26200 * 359.77241 * 4 3 2 9 9 C 1.36106 * 108.47161 * 359.97438 * 8 4 3 10 10 C 1.47283 * 126.45824 * 179.97438 * 9 8 4 11 11 O 1.21534 * 119.99942 * 180.02562 * 10 9 8 12 12 O 1.34776 * 119.99937 * 0.02562 * 10 9 8 13 13 C 1.45193 * 117.00031 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47054 * 330.00506 * 13 12 10 15 15 C 1.50703 * 109.47542 * 209.99838 * 13 12 10 16 16 H 1.07994 * 119.99875 * 275.34144 * 15 13 12 17 17 C 1.37880 * 119.99580 * 95.05935 * 15 13 12 18 18 N 1.31512 * 119.99662 * 174.50614 * 17 15 13 19 19 Si 1.86797 * 120.00203 * 354.50927 * 17 15 13 20 20 H 1.48500 * 109.47314 * 93.99594 * 19 17 15 21 21 H 1.48498 * 109.47099 * 213.99649 * 19 17 15 22 22 H 1.48504 * 109.47164 * 333.99921 * 19 17 15 23 23 C 1.50706 * 109.47099 * 89.99928 * 13 12 10 24 24 C 1.34511 * 125.79327 * 215.12000 * 23 13 12 25 25 C 1.41378 * 106.84086 * 179.88826 * 24 23 13 26 26 C 1.34512 * 106.84104 * 0.37795 * 25 24 23 27 27 O 1.34301 * 108.42226 * 359.76715 * 26 25 24 28 28 H 1.09000 * 109.47292 * 270.12191 * 1 2 3 29 29 H 1.08997 * 109.47049 * 30.12787 * 1 2 3 30 30 H 1.09000 * 109.46467 * 150.12518 * 1 2 3 31 31 H 1.08994 * 109.47595 * 359.97438 * 5 4 3 32 32 H 1.08997 * 109.47049 * 59.99828 * 6 5 4 33 33 H 1.09002 * 109.46648 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46678 * 299.99965 * 6 5 4 35 35 H 1.08996 * 109.47456 * 299.99877 * 7 5 4 36 36 H 1.09000 * 109.46632 * 60.00530 * 7 5 4 37 37 H 1.08995 * 109.46831 * 180.02562 * 7 5 4 38 38 H 0.97003 * 119.99890 * 180.02562 * 18 17 15 39 39 H 1.07997 * 126.57701 * 0.02929 * 24 23 13 40 40 H 1.08006 * 126.57625 * 180.16258 * 25 24 23 41 41 H 1.08006 * 125.78762 * 179.74918 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3060 1.0787 0.0000 4 6 3.5789 0.6581 -0.0057 5 6 4.7926 1.5512 -0.0120 6 6 5.6366 1.2734 1.2337 7 6 5.6252 1.2714 -1.2648 8 7 3.6010 -0.6409 -0.0044 9 6 2.3176 -1.0941 0.0029 10 6 1.8868 -2.5025 0.0062 11 8 0.7025 -2.7757 0.0124 12 8 2.8058 -3.4883 0.0024 13 6 2.3090 -4.8526 0.0066 14 1 1.3511 -4.8889 0.5255 15 6 3.2970 -5.7450 0.7126 16 1 4.1360 -6.1564 0.1712 17 6 3.1331 -6.0314 2.0514 18 7 3.9309 -6.8943 2.6416 19 14 1.7778 -5.1939 3.0266 20 1 0.5691 -6.0565 3.0359 21 1 2.2371 -4.9702 4.4209 22 1 1.4497 -3.8890 2.3981 23 6 2.1295 -5.3262 -1.4128 24 6 1.1597 -6.1490 -1.8510 25 6 1.3676 -6.3249 -3.2383 26 6 2.4569 -5.6059 -3.5633 27 8 2.9142 -5.0031 -2.4538 28 1 -0.3634 0.0022 1.0277 29 1 -0.3633 0.8888 -0.5158 30 1 -0.3632 -0.8911 -0.5119 31 1 4.4764 2.5942 -0.0116 32 1 5.9530 0.2304 1.2331 33 1 6.5143 1.9198 1.2294 34 1 5.0434 1.4727 2.1262 35 1 5.9417 0.2284 -1.2654 36 1 5.0240 1.4693 -2.1522 37 1 6.5034 1.9171 -1.2691 38 1 3.8153 -7.0962 3.5834 39 1 0.3719 -6.5887 -1.2573 40 1 0.7688 -6.9246 -3.9078 41 1 2.8904 -5.5269 -4.5494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526992883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:38 Heat of formation + Delta-G solvation = -57.482520 kcal Electronic energy + Delta-G solvation = -27114.175088 eV Core-core repulsion = 23155.785071 eV Total energy + Delta-G solvation = -3958.390017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.37015 -41.79888 -39.31963 -36.09625 -35.75629 -34.46199 -33.11591 -32.25654 -31.91950 -30.51296 -27.46159 -27.33870 -26.90476 -24.60250 -23.05568 -22.22415 -21.09786 -20.75467 -19.95933 -19.51025 -17.90927 -17.25625 -16.95338 -16.79138 -16.15553 -15.44848 -15.20908 -15.00344 -14.87120 -14.58726 -14.30783 -13.59134 -13.51443 -13.39798 -12.92197 -12.91294 -12.52226 -12.32041 -12.28235 -12.09796 -12.08506 -11.89688 -11.74434 -11.48607 -11.36635 -11.20274 -11.01672 -10.98723 -10.49757 -10.24116 -9.94263 -9.75343 -9.64942 -9.21643 -8.98381 -8.70508 -7.71965 -6.50579 -4.58924 1.15240 2.15840 2.42976 2.48285 3.05630 3.19289 3.24272 3.30421 3.46205 3.53481 3.81386 3.96951 4.11258 4.55199 4.77421 4.85331 4.87306 4.97142 5.20395 5.30685 5.40985 5.43986 5.48422 5.56188 5.60922 5.66498 5.69069 5.73274 5.88194 5.89919 6.01133 6.09143 6.10802 6.17056 6.31763 6.46840 6.58583 6.77058 7.07316 7.16408 7.35370 7.64830 7.91243 8.05384 8.60377 8.62629 9.06100 10.57965 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.004926 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.545004 B = 5683.259513 C = 6413.621807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.032 3.968 3 O -0.199 6.199 4 C 0.185 3.815 5 C 0.009 3.991 6 C -0.147 4.147 7 C -0.146 4.146 8 N -0.424 5.424 9 C -0.048 4.048 10 C 0.538 3.462 11 O -0.520 6.520 12 O -0.329 6.329 13 C 0.251 3.749 14 H 0.081 0.919 15 C -0.501 4.501 16 H 0.091 0.909 17 C 0.092 3.908 18 N -0.854 5.854 19 Si 0.871 3.129 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.258 1.258 23 C 0.032 3.968 24 C -0.227 4.227 25 C -0.210 4.210 26 C -0.072 4.072 27 O -0.167 6.167 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.276 0.724 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.499 15.768 -6.145 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.024 4.024 3 O -0.087 6.087 4 C -0.025 4.025 5 C -0.011 4.011 6 C -0.204 4.204 7 C -0.203 4.203 8 N -0.153 5.153 9 C -0.166 4.166 10 C 0.382 3.618 11 O -0.412 6.412 12 O -0.245 6.245 13 C 0.200 3.800 14 H 0.099 0.901 15 C -0.536 4.536 16 H 0.109 0.891 17 C -0.117 4.117 18 N -0.489 5.489 19 Si 0.695 3.305 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.182 1.182 23 C -0.020 4.020 24 C -0.247 4.247 25 C -0.230 4.230 26 C -0.139 4.139 27 O -0.062 6.062 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.131 0.869 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.963 15.327 -5.956 16.561 hybrid contribution -1.426 0.431 0.478 1.564 sum -3.389 15.759 -5.478 17.024 Atomic orbital electron populations 1.20587 0.82527 1.05300 1.04658 1.23696 0.95001 0.83360 1.00348 1.84294 1.18169 1.36116 1.70092 1.26357 0.83730 0.90610 1.01760 1.19648 0.86854 0.96065 0.98501 1.21880 0.99209 1.03948 0.95389 1.21869 0.99279 1.03891 0.95287 1.70855 1.21352 1.08100 1.14947 1.20876 0.89017 0.93734 1.12992 1.19696 0.84686 0.84890 0.72506 1.90739 1.18082 1.84231 1.48136 1.87331 1.39242 1.17447 1.80432 1.19707 0.98710 0.76651 0.84945 0.90148 1.20799 1.12718 1.24590 0.95488 0.89126 1.25123 0.95988 0.93469 0.97143 1.69859 1.36541 1.30136 1.12324 0.86899 0.82020 0.81430 0.80115 1.19092 1.20049 1.18174 1.23288 0.90391 0.99158 0.89114 1.21350 1.02879 1.05512 0.94915 1.21658 1.00295 1.04999 0.96015 1.23832 0.98496 1.00926 0.90668 1.84096 1.48184 1.57997 1.15968 0.89047 0.90186 0.86946 0.88616 0.90613 0.90991 0.92292 0.90679 0.92325 0.90999 0.91393 0.83966 0.84197 0.79049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 9.87 36.01 0.36 -0.58 16 2 C 0.03 0.52 7.44 -35.05 -0.26 0.26 16 3 O -0.20 -2.98 10.72 6.55 0.07 -2.91 16 4 C 0.18 2.81 6.81 -13.09 -0.09 2.72 16 5 C 0.01 0.09 3.39 -91.77 -0.31 -0.22 16 6 C -0.15 -1.47 9.17 37.16 0.34 -1.12 16 7 C -0.15 -1.41 9.18 37.16 0.34 -1.06 16 8 N -0.42 -8.19 11.36 -7.67 -0.09 -8.27 16 9 C -0.05 -0.96 7.04 -83.04 -0.58 -1.55 16 10 C 0.54 12.59 7.48 34.41 0.26 12.84 16 11 O -0.52 -12.09 14.07 -19.29 -0.27 -12.36 16 12 O -0.33 -8.58 9.85 -43.45 -0.43 -9.00 16 13 C 0.25 6.55 1.85 -29.03 -0.05 6.50 16 14 H 0.08 2.09 4.66 -51.93 -0.24 1.85 16 15 C -0.50 -14.35 9.23 -34.44 -0.32 -14.67 16 16 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 17 C 0.09 2.59 5.47 -17.82 -0.10 2.50 16 18 N -0.85 -24.77 13.96 55.43 0.77 -23.99 16 19 Si 0.87 21.25 27.03 -169.99 -4.60 16.65 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.26 -6.43 6.38 56.52 0.36 -6.07 16 23 C 0.03 0.77 6.18 -35.62 -0.22 0.55 16 24 C -0.23 -4.87 10.81 -39.71 -0.43 -5.30 16 25 C -0.21 -3.83 10.91 -39.71 -0.43 -4.26 16 26 C -0.07 -1.30 12.09 29.42 0.36 -0.95 16 27 O -0.17 -3.84 10.64 2.26 0.02 -3.82 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.11 1.57 6.49 -51.93 -0.34 1.24 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.28 7.34 8.31 -40.82 -0.34 7.01 16 39 H 0.14 2.82 8.06 -52.49 -0.42 2.40 16 40 H 0.14 2.03 8.06 -52.48 -0.42 1.61 16 41 H 0.19 2.54 8.06 -52.48 -0.42 2.11 16 LS Contribution 360.10 15.07 5.43 5.43 Total: -1.00 -33.81 360.10 -5.48 -39.29 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.25 Total: 3.34 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.15 Total: -4.35 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.69 Total: -32.27 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.61 Total: -28.09 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.60 Total: 16.65 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.81 -5.48 -39.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526992883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.190 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds