Wall clock time and date at job start Tue Mar 31 2020 12:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34234 * 126.52541 * 2 1 4 4 C 1.34057 * 108.23957 * 180.25779 * 3 2 1 5 5 C 1.50696 * 125.36932 * 179.80219 * 4 3 2 6 6 C 1.53008 * 109.47033 * 119.98810 * 5 4 3 7 7 C 1.53008 * 109.47068 * 239.98333 * 5 4 3 8 8 N 1.29921 * 109.26200 * 359.77241 * 4 3 2 9 9 C 1.36106 * 108.47161 * 359.97438 * 8 4 3 10 10 C 1.47283 * 126.45824 * 179.97438 * 9 8 4 11 11 O 1.21534 * 119.99942 * 180.02562 * 10 9 8 12 12 O 1.34776 * 119.99937 * 0.02562 * 10 9 8 13 13 C 1.45193 * 117.00031 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47054 * 330.00506 * 13 12 10 15 15 C 1.50703 * 109.47542 * 209.99838 * 13 12 10 16 16 H 1.07994 * 119.99875 * 275.34144 * 15 13 12 17 17 C 1.37880 * 119.99580 * 95.05935 * 15 13 12 18 18 N 1.31512 * 119.99662 * 174.50614 * 17 15 13 19 19 Si 1.86797 * 120.00203 * 354.50927 * 17 15 13 20 20 H 1.48500 * 109.47314 * 93.99594 * 19 17 15 21 21 H 1.48498 * 109.47099 * 213.99649 * 19 17 15 22 22 H 1.48504 * 109.47164 * 333.99921 * 19 17 15 23 23 C 1.50706 * 109.47099 * 89.99928 * 13 12 10 24 24 C 1.34511 * 125.79327 * 215.12000 * 23 13 12 25 25 C 1.41378 * 106.84086 * 179.88826 * 24 23 13 26 26 C 1.34512 * 106.84104 * 0.37795 * 25 24 23 27 27 O 1.34301 * 108.42226 * 359.76715 * 26 25 24 28 28 H 1.09000 * 109.47292 * 270.12191 * 1 2 3 29 29 H 1.08997 * 109.47049 * 30.12787 * 1 2 3 30 30 H 1.09000 * 109.46467 * 150.12518 * 1 2 3 31 31 H 1.08994 * 109.47595 * 359.97438 * 5 4 3 32 32 H 1.08997 * 109.47049 * 59.99828 * 6 5 4 33 33 H 1.09002 * 109.46648 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46678 * 299.99965 * 6 5 4 35 35 H 1.08996 * 109.47456 * 299.99877 * 7 5 4 36 36 H 1.09000 * 109.46632 * 60.00530 * 7 5 4 37 37 H 1.08995 * 109.46831 * 180.02562 * 7 5 4 38 38 H 0.97003 * 119.99890 * 180.02562 * 18 17 15 39 39 H 1.07997 * 126.57701 * 0.02929 * 24 23 13 40 40 H 1.08006 * 126.57625 * 180.16258 * 25 24 23 41 41 H 1.08006 * 125.78762 * 179.74918 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3060 1.0787 0.0000 4 6 3.5789 0.6581 -0.0057 5 6 4.7926 1.5512 -0.0120 6 6 5.6366 1.2734 1.2337 7 6 5.6252 1.2714 -1.2648 8 7 3.6010 -0.6409 -0.0044 9 6 2.3176 -1.0941 0.0029 10 6 1.8868 -2.5025 0.0062 11 8 0.7025 -2.7757 0.0124 12 8 2.8058 -3.4883 0.0024 13 6 2.3090 -4.8526 0.0066 14 1 1.3511 -4.8889 0.5255 15 6 3.2970 -5.7450 0.7126 16 1 4.1360 -6.1564 0.1712 17 6 3.1331 -6.0314 2.0514 18 7 3.9309 -6.8943 2.6416 19 14 1.7778 -5.1939 3.0266 20 1 0.5691 -6.0565 3.0359 21 1 2.2371 -4.9702 4.4209 22 1 1.4497 -3.8890 2.3981 23 6 2.1295 -5.3262 -1.4128 24 6 1.1597 -6.1490 -1.8510 25 6 1.3676 -6.3249 -3.2383 26 6 2.4569 -5.6059 -3.5633 27 8 2.9142 -5.0031 -2.4538 28 1 -0.3634 0.0022 1.0277 29 1 -0.3633 0.8888 -0.5158 30 1 -0.3632 -0.8911 -0.5119 31 1 4.4764 2.5942 -0.0116 32 1 5.9530 0.2304 1.2331 33 1 6.5143 1.9198 1.2294 34 1 5.0434 1.4727 2.1262 35 1 5.9417 0.2284 -1.2654 36 1 5.0240 1.4693 -2.1522 37 1 6.5034 1.9171 -1.2691 38 1 3.8153 -7.0962 3.5834 39 1 0.3719 -6.5887 -1.2573 40 1 0.7688 -6.9246 -3.9078 41 1 2.8904 -5.5269 -4.5494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526992883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:37 Heat of formation + Delta-G solvation = -81.135055 kcal Electronic energy + Delta-G solvation = -27115.200739 eV Core-core repulsion = 23155.785071 eV Total energy + Delta-G solvation = -3959.415668 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.65650 -43.44845 -41.14774 -37.70134 -36.98784 -35.77365 -35.21045 -33.93154 -33.06886 -32.35031 -29.07364 -28.40554 -28.11753 -26.03523 -24.76225 -23.63066 -22.66346 -22.12531 -21.31172 -21.11884 -19.73738 -19.11275 -18.57097 -18.18074 -17.85542 -17.05668 -16.74124 -16.71502 -16.27347 -15.94418 -15.49045 -15.30059 -14.80743 -14.66819 -14.38162 -14.08336 -13.86767 -13.82468 -13.69217 -13.55973 -13.47563 -13.26950 -13.11378 -12.94330 -12.71050 -12.51994 -12.17279 -12.14190 -12.08448 -11.92011 -11.86743 -11.65231 -11.55384 -11.11574 -10.80713 -10.00739 -9.37089 -8.66803 -6.82211 -0.22634 0.76878 0.81415 1.13901 1.17909 1.24827 1.31257 1.64521 1.82358 1.90263 2.06687 2.22581 2.69270 2.91657 3.37345 3.64514 3.86665 3.98263 4.03794 4.04657 4.07761 4.19779 4.22108 4.29041 4.37432 4.48130 4.70564 4.77240 4.82873 4.88454 4.89482 4.89890 4.94523 4.98954 5.03834 5.08882 5.18772 5.30585 5.36466 5.48262 5.67226 5.92427 6.24655 6.30993 6.37349 6.79467 6.87288 8.47127 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.004926 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.545004 B = 5683.259513 C = 6413.621807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.062 3.938 3 O -0.186 6.186 4 C 0.200 3.800 5 C 0.008 3.992 6 C -0.144 4.144 7 C -0.143 4.143 8 N -0.472 5.472 9 C -0.101 4.101 10 C 0.532 3.468 11 O -0.528 6.528 12 O -0.353 6.353 13 C 0.260 3.740 14 H 0.077 0.923 15 C -0.522 4.522 16 H 0.046 0.954 17 C 0.050 3.950 18 N -0.895 5.895 19 Si 0.930 3.070 20 H -0.244 1.244 21 H -0.259 1.259 22 H -0.271 1.271 23 C -0.021 4.021 24 C -0.224 4.224 25 C -0.210 4.210 26 C -0.061 4.061 27 O -0.196 6.196 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.043 0.957 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.284 0.716 39 H 0.153 0.847 40 H 0.184 0.816 41 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 18.606 -7.191 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.005 3.995 3 O -0.074 6.074 4 C -0.010 4.010 5 C -0.011 4.011 6 C -0.202 4.202 7 C -0.200 4.200 8 N -0.200 5.200 9 C -0.217 4.217 10 C 0.378 3.622 11 O -0.420 6.420 12 O -0.269 6.269 13 C 0.209 3.791 14 H 0.094 0.906 15 C -0.557 4.557 16 H 0.064 0.936 17 C -0.156 4.156 18 N -0.531 5.531 19 Si 0.752 3.248 20 H -0.168 1.168 21 H -0.184 1.184 22 H -0.196 1.196 23 C -0.071 4.071 24 C -0.244 4.244 25 C -0.229 4.229 26 C -0.128 4.128 27 O -0.093 6.093 28 H 0.128 0.872 29 H 0.139 0.861 30 H 0.115 0.885 31 H 0.153 0.847 32 H 0.062 0.938 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.170 0.830 40 H 0.201 0.799 41 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -3.540 18.144 -7.001 19.768 hybrid contribution -0.883 -0.350 0.621 1.135 sum -4.423 17.794 -6.380 19.414 Atomic orbital electron populations 1.20802 0.79698 1.06503 1.06092 1.24260 0.96290 0.82393 0.96543 1.84358 1.18062 1.35179 1.69779 1.27371 0.84778 0.90075 0.98772 1.20080 0.85049 0.97035 0.98942 1.21888 1.00432 1.02736 0.95142 1.21873 1.00458 1.02747 0.94937 1.70787 1.21515 1.10408 1.17328 1.20659 0.90615 0.92798 1.17668 1.20085 0.84323 0.85742 0.72058 1.90696 1.17952 1.84655 1.48667 1.87195 1.40368 1.17999 1.81357 1.19342 0.97102 0.76145 0.86546 0.90595 1.20782 1.12504 1.26334 0.96116 0.93560 1.25842 0.98241 0.93794 0.97716 1.69938 1.38399 1.31571 1.13159 0.85982 0.79961 0.79892 0.78982 1.16766 1.18360 1.19582 1.23067 0.92766 1.02191 0.89100 1.21756 1.01922 1.03767 0.96929 1.22106 1.00693 1.05276 0.94795 1.24949 0.98048 0.98782 0.90989 1.84050 1.48929 1.59249 1.17080 0.87238 0.86101 0.88495 0.84665 0.93812 0.87507 0.92389 0.93760 0.92154 0.87563 0.90606 0.82970 0.79866 0.74071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.70 9.87 71.24 0.70 -1.00 16 2 C 0.06 1.95 7.44 25.20 0.19 2.14 16 3 O -0.19 -5.16 10.72 0.54 0.01 -5.15 16 4 C 0.20 5.88 6.81 88.39 0.60 6.48 16 5 C 0.01 0.15 3.39 -11.54 -0.04 0.11 16 6 C -0.14 -2.66 9.17 71.98 0.66 -1.99 16 7 C -0.14 -2.50 9.18 71.98 0.66 -1.84 16 8 N -0.47 -18.75 11.36 -293.09 -3.33 -22.08 16 9 C -0.10 -4.17 7.04 40.38 0.28 -3.89 16 10 C 0.53 25.94 7.48 70.20 0.53 26.46 16 11 O -0.53 -25.18 14.07 19.72 0.28 -24.91 16 12 O -0.35 -19.57 9.85 -54.24 -0.53 -20.10 16 13 C 0.26 14.35 1.85 29.10 0.05 14.41 16 14 H 0.08 4.13 4.66 -2.39 -0.01 4.12 16 15 C -0.52 -32.05 9.23 25.60 0.24 -31.81 16 16 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 17 C 0.05 2.94 5.47 84.66 0.46 3.40 16 18 N -0.90 -54.26 13.96 21.45 0.30 -53.96 16 19 Si 0.93 45.24 27.03 68.60 1.85 47.10 16 20 H -0.24 -10.91 7.11 99.48 0.71 -10.21 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.27 -13.68 6.38 99.48 0.63 -13.05 16 23 C -0.02 -1.04 6.18 24.83 0.15 -0.89 16 24 C -0.22 -9.65 10.81 22.19 0.24 -9.41 16 25 C -0.21 -7.19 10.91 22.19 0.24 -6.95 16 26 C -0.06 -2.14 12.09 66.97 0.81 -1.33 16 27 O -0.20 -9.30 10.64 0.81 0.01 -9.29 16 28 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.10 2.59 6.49 -2.39 -0.02 2.58 16 31 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.15 6.03 8.06 -2.91 -0.02 6.01 16 40 H 0.18 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.24 5.53 8.06 -2.91 -0.02 5.51 16 Total: -1.00 -81.57 360.10 5.35 -76.22 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.98 Total: 18.27 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 5.78 Total: -6.11 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -3.03 Total: -76.04 kcal Atomic # 8 Polarization: -59.20 SS G_CDS: -0.24 Total: -59.44 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.85 Total: 47.10 kcal Total: -81.57 5.35 -76.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526992883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.912 kcal (2) G-P(sol) polarization free energy of solvation -81.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds