Wall clock time and date at job start Tue Mar 31 2020 13:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47175 * 2 1 4 4 C 1.50701 * 109.47306 * 240.00024 * 2 1 3 5 5 H 1.08005 * 119.99668 * 240.00284 * 4 2 1 6 6 C 1.37873 * 120.00306 * 59.99417 * 4 2 1 7 7 N 1.31511 * 119.99517 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00225 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47033 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46732 * 120.00431 * 8 6 4 11 11 H 1.48503 * 109.47276 * 240.00323 * 8 6 4 12 12 C 1.53004 * 109.47282 * 119.99740 * 2 1 3 13 13 S 1.81398 * 109.47089 * 300.00036 * 12 2 1 14 14 O 1.42099 * 110.54109 * 68.37549 * 13 12 2 15 15 O 1.42100 * 110.54403 * 291.62508 * 13 12 2 16 16 N 1.65603 * 104.45021 * 179.97438 * 13 12 2 17 17 C 1.46497 * 119.99855 * 65.00018 * 16 13 12 18 18 H 1.09001 * 110.01673 * 336.39025 * 17 16 13 19 19 C 1.53871 * 110.07488 * 97.80984 * 17 16 13 20 20 C 1.54269 * 106.59813 * 119.30490 * 19 17 16 21 21 C 1.54885 * 104.19677 * 23.61322 * 20 19 17 22 22 H 1.09002 * 110.75709 * 80.37016 * 21 20 19 23 23 C 1.50697 * 110.91369 * 203.67045 * 21 20 19 24 24 O 1.20826 * 120.00571 * 115.95420 * 23 21 20 25 25 O 1.34233 * 119.99959 * 295.94738 * 23 21 20 26 26 C 1.54271 * 110.03233 * 215.00061 * 17 16 13 27 27 H 1.09003 * 109.47190 * 299.99800 * 1 2 3 28 28 H 1.09000 * 109.47406 * 60.00109 * 1 2 3 29 29 H 1.09004 * 109.46985 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47056 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47076 * 299.99720 * 3 2 1 32 32 H 1.09003 * 109.46898 * 60.00021 * 3 2 1 33 33 H 0.97007 * 120.00170 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47383 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.46912 * 60.00198 * 12 2 1 36 36 H 0.97002 * 120.00144 * 245.00153 * 16 13 12 37 37 H 1.09000 * 110.03307 * 238.59242 * 19 17 16 38 38 H 1.08999 * 110.03179 * 359.97438 * 19 17 16 39 39 H 1.09002 * 110.48538 * 264.93327 * 20 19 17 40 40 H 1.08996 * 110.48433 * 142.29362 * 20 19 17 41 41 H 0.96700 * 117.00262 * 179.97438 * 25 23 21 42 42 H 1.09002 * 110.48367 * 98.38019 * 26 17 16 43 43 H 1.09003 * 110.48661 * 335.73439 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9434 0.8300 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1475 -2.2863 -3.6037 10 1 1.1678 -1.5867 -4.8164 11 1 3.1473 -0.1858 -4.8161 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1340 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0479 1.4102 2.8543 16 7 2.0530 -0.7407 3.9937 17 6 3.5014 -0.7980 4.2060 18 1 4.0238 -0.5931 3.2716 19 6 3.9188 0.2236 5.2783 20 6 4.5588 -0.5812 6.4283 21 6 5.0359 -1.8920 5.7550 22 1 5.9842 -1.7387 5.2398 23 6 5.1528 -3.0040 6.7653 24 8 4.4427 -3.9776 6.6772 25 8 6.0462 -2.9131 7.7631 26 6 3.9023 -2.1880 4.7418 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.7093 1.1616 -3.4844 34 1 3.1300 -0.7216 1.2491 35 1 1.6767 -1.7489 1.2493 36 1 1.4558 -1.2150 4.5931 37 1 4.6439 0.9243 4.8642 38 1 3.0438 0.7629 5.6409 39 1 3.8203 -0.7960 7.2007 40 1 5.4053 -0.0384 6.8488 41 1 6.0843 -3.6510 8.3869 42 1 4.2698 -2.8177 3.9315 43 1 3.0579 -2.6622 5.2419 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573467517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:03 Heat of formation + Delta-G solvation = -203.416160 kcal Electronic energy + Delta-G solvation = -26007.663207 eV Core-core repulsion = 22178.388984 eV Total energy + Delta-G solvation = -3829.274223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45878 -39.20771 -38.10359 -38.01318 -37.04735 -36.83929 -34.55340 -33.61636 -30.03553 -28.69014 -28.27998 -27.66812 -27.23066 -24.24350 -21.59728 -21.46691 -21.08361 -20.13555 -19.03981 -18.79545 -18.01152 -17.85134 -17.17777 -16.87864 -16.67978 -16.59086 -16.05517 -15.73257 -15.00128 -14.69144 -14.47147 -14.38143 -14.28988 -13.96824 -13.79711 -13.38811 -13.16012 -12.97820 -12.89453 -12.83298 -12.74036 -12.51426 -12.48091 -12.35020 -12.16771 -12.14075 -12.05546 -11.92892 -11.89499 -11.62543 -11.53397 -11.36970 -11.34831 -10.65565 -10.40879 -10.28448 -8.01904 -6.20306 -0.56865 1.22751 1.43662 1.47020 1.56273 1.89784 2.19177 2.45207 2.88731 3.20626 3.36158 3.38844 3.54052 3.92504 4.04167 4.16635 4.25330 4.33518 4.39269 4.50836 4.53228 4.56969 4.62830 4.72584 4.88601 4.89554 4.95602 5.01659 5.11111 5.14279 5.24988 5.33581 5.39929 5.45803 5.53090 5.65672 5.66500 5.99666 6.13291 6.14940 6.36002 6.85055 7.03050 7.48156 8.98014 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.019249 B = 0.003425 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.241679 B = 8172.990633 C = 8933.113589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.069 3.931 3 C -0.159 4.159 4 C -0.515 4.515 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.283 1.283 12 C -0.589 4.589 13 S 2.613 3.387 14 O -0.997 6.997 15 O -0.983 6.983 16 N -1.108 6.108 17 C 0.138 3.862 18 H 0.102 0.898 19 C -0.143 4.143 20 C -0.100 4.100 21 C -0.088 4.088 22 H 0.144 0.856 23 C 0.493 3.507 24 O -0.552 6.552 25 O -0.510 6.510 26 C -0.114 4.114 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.260 0.740 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.422 0.578 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.426 0.574 42 H 0.092 0.908 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.241 -5.636 18.945 22.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 C -0.217 4.217 4 C -0.555 4.555 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.209 1.209 12 C -0.721 4.721 13 S 2.710 3.290 14 O -0.988 6.988 15 O -0.973 6.973 16 N -0.867 5.867 17 C 0.031 3.969 18 H 0.120 0.880 19 C -0.182 4.182 20 C -0.138 4.138 21 C -0.107 4.107 22 H 0.162 0.838 23 C 0.337 3.663 24 O -0.443 6.443 25 O -0.323 6.323 26 C -0.154 4.154 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.258 0.742 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.288 0.712 42 H 0.111 0.889 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.524 -4.574 18.515 21.782 hybrid contribution -0.039 -1.533 -0.735 1.700 sum 10.485 -6.107 17.780 21.525 Atomic orbital electron populations 1.22222 0.98043 1.00366 1.01294 1.17914 0.92126 0.92304 0.90939 1.22194 0.99957 0.98176 1.01339 1.21344 1.31483 1.12223 0.90403 0.91809 1.25674 0.95232 0.95664 1.01679 1.69955 1.37299 1.23730 1.23723 0.85573 0.77995 0.78762 0.79685 1.18903 1.21193 1.20909 1.30482 1.12752 1.13325 1.15534 1.04758 0.73431 0.75049 0.75762 1.93505 1.31839 1.87138 1.86276 1.93515 1.78268 1.39619 1.85888 1.55606 1.14822 1.70471 1.45848 1.21662 0.78853 0.95913 1.00507 0.88013 1.22710 1.01852 0.98017 0.95604 1.22292 1.01403 0.92894 0.97180 1.22076 1.02883 0.92219 0.93565 0.83829 1.23517 0.75468 0.86782 0.80521 1.90735 1.44341 1.34589 1.74631 1.84508 1.56608 1.51958 1.39232 1.22643 0.98164 0.95873 0.98681 0.94931 0.91113 0.94312 0.93820 0.91273 0.94738 0.92995 0.84193 0.84705 0.74247 0.89293 0.91176 0.91243 0.88094 0.71225 0.88916 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.01 7.77 71.98 0.56 -7.45 16 2 C 0.07 3.27 0.52 -52.93 -0.03 3.24 16 3 C -0.16 -7.68 7.78 71.98 0.56 -7.13 16 4 C -0.52 -26.42 8.01 25.60 0.21 -26.21 16 5 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 6 C 0.02 0.88 5.15 84.65 0.44 1.32 16 7 N -0.91 -50.04 9.35 21.45 0.20 -49.84 16 8 Si 0.95 41.79 29.54 68.60 2.03 43.81 16 9 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 12 C -0.59 -21.30 4.91 71.98 0.35 -20.95 16 13 S 2.61 90.12 4.42 -56.49 -0.25 89.87 16 14 O -1.00 -40.79 15.70 -127.65 -2.00 -42.79 16 15 O -0.98 -38.19 15.44 -127.65 -1.97 -40.16 16 16 N -1.11 -26.47 5.28 -166.38 -0.88 -27.34 16 17 C 0.14 2.63 3.34 45.72 0.15 2.78 16 18 H 0.10 1.81 7.22 -2.39 -0.02 1.79 16 19 C -0.14 -2.43 6.60 31.32 0.21 -2.23 16 20 C -0.10 -1.22 6.27 31.67 0.20 -1.02 16 21 C -0.09 -1.11 3.39 -10.25 -0.03 -1.14 16 22 H 0.14 1.15 8.14 -2.39 -0.02 1.14 16 23 C 0.49 7.57 7.64 71.24 0.54 8.11 16 24 O -0.55 -12.59 16.51 21.97 0.36 -12.23 16 25 O -0.51 -5.12 13.42 -51.44 -0.69 -5.81 16 26 C -0.11 -1.84 5.58 31.67 0.18 -1.67 16 27 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16 28 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 32 H 0.03 1.58 5.46 -2.39 -0.01 1.57 16 33 H 0.26 13.74 8.31 -92.70 -0.77 12.97 16 34 H 0.14 4.32 7.48 -2.39 -0.02 4.30 16 35 H 0.13 4.42 8.14 -2.39 -0.02 4.41 16 36 H 0.42 8.69 8.60 -96.74 -0.83 7.86 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.40 7.92 -2.39 -0.02 1.38 16 39 H 0.07 0.89 8.05 -2.39 -0.02 0.87 16 40 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.43 1.05 9.10 -74.06 -0.67 0.38 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.49 7.18 -2.39 -0.02 1.48 16 Total: -1.00 -72.67 349.60 -0.33 -73.00 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.46 Total: 23.82 kcal Atomic # 6 Polarization: -55.66 SS G_CDS: 3.33 Total: -52.33 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -0.68 Total: -77.18 kcal Atomic # 8 Polarization: -96.69 SS G_CDS: -4.30 Total: -100.99 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 16 Polarization: 90.12 SS G_CDS: -0.25 Total: 89.87 kcal Total: -72.67 -0.33 -73.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573467517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.412 kcal (2) G-P(sol) polarization free energy of solvation -72.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds