Wall clock time and date at job start Tue Mar 31 2020 12:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32993 * 1 3 3 C 1.50704 * 120.00049 * 2 1 4 4 C 1.52997 * 109.47459 * 95.00175 * 3 2 1 5 5 C 1.50691 * 109.47239 * 180.02562 * 4 3 2 6 6 O 1.20824 * 120.00168 * 359.97438 * 5 4 3 7 7 O 1.34231 * 120.00120 * 179.97438 * 5 4 3 8 8 C 1.47105 * 119.99929 * 179.97438 * 2 1 3 9 9 O 1.21608 * 119.99711 * 359.97438 * 8 2 1 10 10 N 1.34769 * 119.99879 * 180.02562 * 8 2 1 11 11 C 1.46508 * 120.00011 * 179.97438 * 10 8 2 12 12 C 1.50695 * 109.47103 * 179.97438 * 11 10 8 13 13 C 1.38299 * 119.93247 * 90.00118 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47264 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47375 * 119.99795 * 21 19 17 24 24 H 1.48506 * 109.47301 * 239.99793 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.08001 * 119.99762 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.99987 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46793 * 215.00117 * 3 2 1 30 30 H 1.08995 * 109.47125 * 334.99898 * 3 2 1 31 31 H 1.09002 * 109.46964 * 300.00293 * 4 3 2 32 32 H 1.09004 * 109.47209 * 59.99182 * 4 3 2 33 33 H 0.96700 * 117.00432 * 179.97438 * 7 5 4 34 34 H 0.97001 * 120.00514 * 359.97438 * 10 8 2 35 35 H 1.08998 * 109.46632 * 59.99915 * 11 10 8 36 36 H 1.08996 * 109.47144 * 299.99646 * 11 10 8 37 37 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 38 38 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 39 39 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 40 40 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 41 41 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0835 1.3051 0.0000 4 6 2.4474 1.6840 1.4369 5 6 3.2003 2.9893 1.4369 6 8 3.4234 3.5581 0.3946 7 8 3.6232 3.5202 2.5950 8 6 2.0654 -1.2740 0.0006 9 8 1.4573 -2.3271 0.0015 10 7 3.4131 -1.2740 0.0011 11 6 4.1457 -2.5428 0.0022 12 6 5.6273 -2.2674 0.0020 13 6 6.3057 -2.1402 1.2004 14 6 7.6636 -1.8884 1.2036 15 6 8.3477 -1.7623 0.0015 16 8 9.6825 -1.5152 0.0013 17 6 10.3056 -1.5173 1.1970 18 1 9.7315 -1.6285 2.1049 19 6 11.6836 -1.3767 1.2610 20 7 12.3831 -1.2417 0.1550 21 14 12.5468 -1.3803 2.9175 22 1 11.5426 -1.5461 3.9987 23 1 13.5181 -2.5024 2.9671 24 1 13.2661 -0.0945 3.1037 25 6 7.6625 -1.8842 -1.2003 26 6 6.3056 -2.1417 -1.1967 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 2.9942 1.1988 -0.5895 30 1 1.4586 2.0854 -0.4343 31 1 1.5367 1.7902 2.0264 32 1 3.0723 0.9036 1.8713 33 1 4.1022 4.3587 2.5446 34 1 3.8982 -0.4339 0.0007 35 1 3.8826 -3.1149 -0.8875 36 1 3.8821 -3.1137 0.8925 37 1 5.7733 -2.2388 2.1348 38 1 8.1928 -1.7896 2.1397 39 1 13.3469 -1.1429 0.1997 40 1 8.1909 -1.7822 -2.1366 41 1 5.7730 -2.2411 -2.1309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588629550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:30 Heat of formation + Delta-G solvation = -146.427484 kcal Electronic energy + Delta-G solvation = -25517.372060 eV Core-core repulsion = 21555.125100 eV Total energy + Delta-G solvation = -3962.246960 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.35721 -40.99832 -40.55983 -38.53459 -37.24362 -36.26718 -35.67882 -34.27895 -31.86842 -31.82533 -31.38706 -27.80493 -26.73503 -26.04890 -23.67465 -23.63840 -22.12519 -22.00820 -20.30060 -19.86356 -19.14269 -18.85665 -18.01335 -17.38455 -17.06646 -16.91444 -16.62472 -16.34109 -15.95594 -15.89707 -15.55539 -15.22506 -14.86789 -14.63530 -14.41144 -14.39389 -14.23958 -14.03997 -13.68556 -13.38012 -13.18926 -13.05161 -12.70271 -12.57604 -12.50411 -12.36327 -12.26564 -12.10769 -12.08973 -11.63126 -11.21446 -11.02857 -10.80049 -10.45754 -10.03163 -9.82781 -9.02779 -8.49483 -6.17795 0.44598 0.52867 0.55943 1.24253 1.35374 1.42764 1.53423 2.10470 2.16141 2.31650 2.38297 2.85169 3.15724 3.47484 3.74504 3.82439 3.87780 3.93978 4.01645 4.12272 4.15896 4.44371 4.49760 4.55077 4.66033 4.69147 4.72491 4.78978 4.89669 5.02616 5.08752 5.13209 5.24944 5.35911 5.41167 5.49830 5.52309 5.67343 5.67568 5.73044 6.00364 6.14331 6.56649 6.95419 7.00837 7.21937 7.74681 8.73669 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.003006 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.906429 B = 9313.752821 C =10751.179633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.193 4.193 3 C -0.067 4.067 4 C -0.111 4.111 5 C 0.481 3.519 6 O -0.553 6.553 7 O -0.518 6.518 8 C 0.546 3.454 9 O -0.586 6.586 10 N -0.713 5.713 11 C 0.183 3.817 12 C -0.184 4.184 13 C -0.045 4.045 14 C -0.243 4.243 15 C 0.123 3.877 16 O -0.230 6.230 17 C -0.413 4.413 18 H 0.105 0.895 19 C -0.022 4.022 20 N -0.920 5.920 21 Si 1.018 2.982 22 H -0.249 1.249 23 H -0.270 1.270 24 H -0.269 1.269 25 C -0.206 4.206 26 C -0.046 4.046 27 H 0.150 0.850 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.136 0.864 32 H 0.111 0.889 33 H 0.426 0.574 34 H 0.408 0.592 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.121 0.879 39 H 0.273 0.727 40 H 0.114 0.886 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.051 6.313 4.988 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.196 4.196 3 C -0.104 4.104 4 C -0.148 4.148 5 C 0.325 3.675 6 O -0.444 6.444 7 O -0.331 6.331 8 C 0.336 3.664 9 O -0.469 6.469 10 N -0.364 5.364 11 C 0.060 3.940 12 C -0.185 4.185 13 C -0.063 4.063 14 C -0.262 4.262 15 C 0.072 3.928 16 O -0.136 6.136 17 C -0.489 4.489 18 H 0.122 0.878 19 C -0.220 4.220 20 N -0.557 5.557 21 Si 0.838 3.162 22 H -0.173 1.173 23 H -0.195 1.195 24 H -0.194 1.194 25 C -0.225 4.225 26 C -0.064 4.064 27 H 0.168 0.832 28 H 0.126 0.874 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.154 0.846 32 H 0.129 0.871 33 H 0.287 0.713 34 H 0.244 0.756 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.160 0.840 38 H 0.139 0.861 39 H 0.082 0.918 40 H 0.132 0.868 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.222 5.418 4.493 24.265 hybrid contribution 1.745 0.888 0.284 1.979 sum -21.476 6.305 4.778 22.887 Atomic orbital electron populations 1.24948 0.93880 1.04647 0.87212 1.21380 0.96017 0.92363 1.09867 1.20374 1.01021 0.93960 0.95092 1.21483 1.02355 0.91109 0.99856 1.23855 0.75776 0.87323 0.80505 1.90744 1.55707 1.63324 1.34587 1.84505 1.69395 1.43567 1.35654 1.18918 0.82148 0.89893 0.75408 1.90770 1.68998 1.34488 1.52611 1.46193 1.06044 1.10161 1.74026 1.19916 0.85828 0.85574 1.02708 1.19519 0.95127 1.10955 0.92919 1.20958 0.92218 0.94762 0.98404 1.21255 0.96136 1.11514 0.97332 1.19986 0.84541 0.92901 0.95366 1.83950 1.17161 1.78754 1.33702 1.21884 0.91027 1.52403 0.83595 0.87815 1.26599 0.95917 0.95797 1.03682 1.70185 1.07771 1.47948 1.29838 0.84530 0.78173 0.78538 0.75001 1.17253 1.19478 1.19384 1.20447 0.95513 1.11114 0.95447 1.20890 0.91753 0.95185 0.98581 0.83247 0.87358 0.91138 0.88333 0.84639 0.87089 0.71255 0.75587 0.90923 0.90674 0.84007 0.86085 0.91794 0.86807 0.83664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 13.90 66.65 0.93 0.17 16 2 C -0.19 -2.87 5.25 -18.70 -0.10 -2.97 16 3 C -0.07 -0.86 4.12 29.85 0.12 -0.74 16 4 C -0.11 -1.25 5.79 29.84 0.17 -1.08 16 5 C 0.48 7.95 8.33 71.23 0.59 8.54 16 6 O -0.55 -13.14 16.74 21.97 0.37 -12.77 16 7 O -0.52 -6.97 13.42 -51.43 -0.69 -7.66 16 8 C 0.55 12.13 7.75 86.57 0.67 12.80 16 9 O -0.59 -17.32 16.22 -4.06 -0.07 -17.38 16 10 N -0.71 -15.07 5.50 -470.46 -2.59 -17.65 16 11 C 0.18 4.34 5.80 85.63 0.50 4.83 16 12 C -0.18 -5.25 5.25 -19.84 -0.10 -5.36 16 13 C -0.04 -1.41 9.69 22.25 0.22 -1.19 16 14 C -0.24 -9.93 9.17 22.39 0.21 -9.72 16 15 C 0.12 5.87 6.65 22.58 0.15 6.02 16 16 O -0.23 -13.47 9.76 -22.72 -0.22 -13.69 16 17 C -0.41 -23.44 9.49 67.92 0.64 -22.79 16 18 H 0.10 5.36 5.20 -2.91 -0.02 5.35 16 19 C -0.02 -1.24 5.49 84.84 0.47 -0.77 16 20 N -0.92 -55.68 13.67 21.62 0.30 -55.38 16 21 Si 1.02 41.89 29.55 68.60 2.03 43.91 16 22 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 23 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 C -0.21 -8.36 9.99 22.39 0.22 -8.14 16 26 C -0.05 -1.43 9.69 22.25 0.22 -1.22 16 27 H 0.15 0.61 8.02 -2.91 -0.02 0.59 16 28 H 0.11 1.47 7.49 -2.91 -0.02 1.45 16 29 H 0.07 1.12 6.92 -2.38 -0.02 1.10 16 30 H 0.10 1.09 7.97 -2.39 -0.02 1.08 16 31 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.43 2.85 9.10 -74.06 -0.67 2.18 16 34 H 0.41 7.85 6.68 -92.71 -0.62 7.23 16 35 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 36 H 0.08 1.76 8.08 -2.39 -0.02 1.74 16 37 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 39 H 0.27 15.11 8.31 -92.71 -0.77 14.33 16 40 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 41 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -79.06 364.50 3.82 -75.24 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -0.20 Total: 27.00 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 4.90 Total: -21.61 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -2.29 Total: -73.04 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.61 Total: -51.50 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -79.06 3.82 -75.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588629550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.187 kcal (2) G-P(sol) polarization free energy of solvation -79.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds