Wall clock time and date at job start Tue Mar 31 2020 12:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47353 * 2 1 4 4 C 1.50696 * 109.47462 * 239.99720 * 2 1 3 5 5 O 1.21295 * 120.00605 * 244.44028 * 4 2 1 6 6 N 1.34777 * 119.99679 * 64.44403 * 4 2 1 7 7 C 1.37102 * 119.99979 * 179.97438 * 6 4 2 8 8 H 1.07995 * 120.00055 * 0.02562 * 7 6 4 9 9 C 1.38952 * 120.00035 * 179.97438 * 7 6 4 10 10 N 1.31412 * 119.99895 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00064 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47329 * 60.00178 * 11 9 7 13 13 H 1.48506 * 109.47345 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47127 * 299.99952 * 11 9 7 15 15 C 1.50708 * 109.46902 * 120.00043 * 2 1 3 16 16 C 1.38301 * 119.92463 * 234.06081 * 15 2 1 17 17 C 1.38513 * 120.20989 * 179.97438 * 16 15 2 18 18 F 1.35099 * 119.97079 * 179.74475 * 17 16 15 19 19 C 1.38284 * 120.06395 * 0.02562 * 17 16 15 20 20 C 1.39245 * 119.85380 * 359.97438 * 19 17 16 21 21 C 1.48473 * 120.10128 * 180.02562 * 20 19 17 22 22 N 1.34049 * 126.66913 * 179.64722 * 21 20 19 23 23 N 1.28986 * 107.26071 * 179.83172 * 22 21 20 24 24 N 1.28721 * 108.94780 * 0.43686 * 23 22 21 25 25 H 0.97000 * 125.34455 * 179.69324 * 24 23 22 26 26 N 1.28871 * 109.31829 * 359.72117 * 24 23 22 27 27 C 1.38014 * 119.92596 * 54.04145 * 15 2 1 28 28 H 1.08998 * 109.47334 * 300.00167 * 1 2 3 29 29 H 1.09006 * 109.46865 * 60.00203 * 1 2 3 30 30 H 1.09000 * 109.47101 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47297 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47278 * 300.00191 * 3 2 1 33 33 H 1.09002 * 109.46792 * 60.00106 * 3 2 1 34 34 H 0.97003 * 120.00413 * 359.97438 * 6 4 2 35 35 H 0.97006 * 120.00152 * 179.97438 * 10 9 7 36 36 H 1.07996 * 119.89812 * 0.02562 * 16 15 2 37 37 H 1.08003 * 120.07157 * 179.97438 * 19 17 16 38 38 H 1.07995 * 120.03710 * 0.02562 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.6619 -1.7415 -1.1209 6 7 1.7823 -0.2001 -2.4525 7 6 2.2398 -0.8461 -3.5719 8 1 2.8002 -1.7641 -3.4744 9 6 1.9815 -0.3203 -4.8318 10 7 1.2991 0.7965 -4.9504 11 14 2.6042 -1.2008 -6.3570 12 1 2.0232 -2.5663 -6.4122 13 1 2.1998 -0.4410 -7.5672 14 1 4.0853 -1.2949 -6.3042 15 6 2.0323 -0.7105 1.2305 16 6 2.9255 -0.0780 2.0760 17 6 3.3906 -0.7253 3.2089 18 9 4.2670 -0.1049 4.0287 19 6 2.9631 -2.0081 3.4985 20 6 2.0638 -2.6474 2.6490 21 6 1.6007 -4.0245 2.9549 22 7 0.7378 -4.7569 2.2368 23 7 0.6056 -5.8907 2.8376 24 7 1.3377 -5.8905 3.8964 25 1 1.4133 -6.6242 4.5264 26 7 1.9538 -4.7624 3.9884 27 6 1.5995 -1.9906 1.5113 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.2786 0.6243 -2.5401 35 1 1.1191 1.1639 -5.8300 36 1 3.2609 0.9240 1.8528 37 1 3.3259 -2.5131 4.3815 38 1 0.9021 -2.4827 0.8498 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589045264.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:59 Heat of formation + Delta-G solvation = 61.964972 kcal Electronic energy + Delta-G solvation = -26238.188089 eV Core-core repulsion = 22226.102901 eV Total energy + Delta-G solvation = -4012.085188 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.119 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.80582 -44.52089 -39.99402 -37.99289 -35.07983 -34.33006 -33.94087 -33.25653 -31.21630 -30.49767 -29.54818 -27.18364 -25.15570 -24.91273 -24.45310 -23.21322 -21.94718 -21.13958 -19.37783 -18.57355 -18.06235 -17.20785 -16.95729 -16.35285 -16.00342 -15.64874 -15.40585 -14.88273 -14.77111 -14.29183 -14.07724 -13.80260 -13.58861 -13.14044 -13.00679 -12.57649 -12.45812 -12.05730 -11.93618 -11.84665 -11.60098 -11.55303 -11.47400 -11.39039 -11.21895 -11.06909 -10.87290 -10.69384 -10.58759 -10.43352 -10.18016 -9.50442 -8.76685 -8.48560 -8.27997 -7.97419 -6.42700 -3.83187 0.64130 1.13337 1.31042 2.13387 2.30147 3.20167 3.26309 3.30858 3.53737 3.71894 3.87219 4.06000 4.17839 4.37514 4.77914 4.87256 4.97809 5.12166 5.19354 5.27085 5.32040 5.36342 5.42775 5.53691 5.67490 5.88158 5.91659 6.00583 6.07474 6.11161 6.21114 6.25311 6.29794 6.39907 6.42960 6.59089 6.72157 6.93136 7.54821 8.04234 8.07888 8.58788 9.16342 9.52558 10.03173 10.74664 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.013203 B = 0.003825 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.141375 B = 7318.708803 C = 8636.352949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.040 4.040 3 C -0.144 4.144 4 C 0.451 3.549 5 O -0.585 6.585 6 N -0.554 5.554 7 C -0.300 4.300 8 H 0.103 0.897 9 C 0.025 3.975 10 N -0.900 5.900 11 Si 0.929 3.071 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.274 1.274 15 C -0.013 4.013 16 C -0.130 4.130 17 C 0.091 3.909 18 F -0.140 7.140 19 C -0.123 4.123 20 C 0.001 3.999 21 C 0.229 3.771 22 N -0.257 5.257 23 N -0.050 5.050 24 N -0.231 5.231 25 H 0.474 0.526 26 N -0.297 5.297 27 C -0.046 4.046 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.393 0.607 35 H 0.272 0.728 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.534 -3.446 17.681 18.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.044 4.044 3 C -0.202 4.202 4 C 0.236 3.764 5 O -0.469 6.469 6 N -0.189 5.189 7 C -0.430 4.430 8 H 0.121 0.879 9 C -0.177 4.177 10 N -0.541 5.541 11 Si 0.756 3.244 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.014 4.014 16 C -0.149 4.149 17 C 0.071 3.929 18 F -0.119 7.119 19 C -0.144 4.144 20 C -0.003 4.003 21 C -0.051 4.051 22 N -0.130 5.130 23 N -0.046 5.046 24 N -0.077 5.077 25 H 0.328 0.672 26 N -0.148 5.148 27 C -0.066 4.066 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.227 0.773 35 H 0.082 0.918 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.496 -4.572 17.469 18.119 hybrid contribution 0.561 0.022 -0.278 0.627 sum -0.934 -4.550 17.191 17.808 Atomic orbital electron populations 1.21889 0.92163 1.02915 1.02533 1.19678 0.96963 0.95717 0.92009 1.21983 1.01722 0.93811 1.02655 1.19449 0.85844 0.87271 0.83856 1.90559 1.44766 1.25510 1.86102 1.41809 1.48634 1.24323 1.04178 1.19676 1.32215 1.07888 0.83210 0.87937 1.25240 0.96973 0.96264 0.99218 1.69598 1.39587 1.19637 1.25289 0.85941 0.79240 0.79158 0.80048 1.19857 1.20960 1.19919 1.19173 0.94689 0.93441 0.94090 1.21318 0.98286 1.01777 0.93527 1.17275 0.92991 0.91706 0.90896 1.91489 1.66666 1.82425 1.71275 1.20904 0.98737 0.93802 1.01004 1.16818 0.99499 0.87221 0.96750 1.23558 0.95618 0.96920 0.89016 1.76184 1.16127 0.97653 1.23068 1.78938 1.12858 1.16490 0.96274 1.47705 1.27659 1.13092 1.19195 0.67216 1.74902 1.20584 0.95199 1.24166 1.21051 0.98293 0.93415 0.93861 0.92067 0.91189 0.91809 0.91846 0.91127 0.91912 0.77301 0.91775 0.83827 0.84195 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.16 37.16 0.30 -1.72 16 2 C -0.04 -0.68 0.72 -156.81 -0.11 -0.79 16 3 C -0.14 -2.08 7.01 37.16 0.26 -1.82 16 4 C 0.45 10.23 6.35 -10.99 -0.07 10.16 16 5 O -0.58 -15.41 14.90 5.54 0.08 -15.33 16 6 N -0.55 -13.53 5.11 -10.96 -0.06 -13.59 16 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 9 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 10 N -0.90 -23.90 13.05 55.50 0.72 -23.17 16 11 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 C -0.01 -0.22 4.33 -104.68 -0.45 -0.67 16 16 C -0.13 -1.88 8.97 -39.46 -0.35 -2.23 16 17 C 0.09 1.27 7.29 -39.46 -0.29 0.98 16 18 F -0.14 -1.91 17.26 2.25 0.04 -1.87 16 19 C -0.12 -1.69 9.68 -39.19 -0.38 -2.07 16 20 C 0.00 0.01 5.88 -104.90 -0.62 -0.61 16 21 C 0.23 3.36 7.94 -156.30 -1.24 2.12 16 22 N -0.26 -4.01 12.23 32.16 0.39 -3.61 16 23 N -0.05 -0.64 13.47 60.35 0.81 0.17 16 24 N -0.23 -2.17 7.90 60.35 0.48 -1.69 16 25 H 0.47 1.89 8.96 -340.38 -3.05 -1.16 16 26 N -0.30 -3.59 12.08 32.17 0.39 -3.20 16 27 C -0.05 -0.76 7.79 -39.26 -0.31 -1.07 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.04 7.88 -51.93 -0.41 0.63 16 30 H 0.06 0.97 7.07 -51.93 -0.37 0.60 16 31 H 0.06 0.93 7.23 -51.93 -0.38 0.56 16 32 H 0.07 1.04 7.33 -51.93 -0.38 0.66 16 33 H 0.06 0.71 7.79 -51.93 -0.40 0.31 16 34 H 0.39 9.15 6.79 -40.82 -0.28 8.87 16 35 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.14 1.82 5.89 -52.49 -0.31 1.51 16 37 H 0.14 1.66 7.88 -52.48 -0.41 1.24 16 38 H 0.14 2.52 7.05 -52.49 -0.37 2.15 16 LS Contribution 333.64 15.07 5.03 5.03 Total: -1.00 -32.47 333.64 -6.92 -39.39 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.29 Total: 7.53 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -3.50 Total: -5.49 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 2.74 Total: -45.09 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.08 Total: -15.33 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.47 -6.92 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589045264.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.355 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds