Wall clock time and date at job start Tue Mar 31 2020 12:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47353 * 2 1 4 4 C 1.50696 * 109.47462 * 239.99720 * 2 1 3 5 5 O 1.21295 * 120.00605 * 244.44028 * 4 2 1 6 6 N 1.34777 * 119.99679 * 64.44403 * 4 2 1 7 7 C 1.37102 * 119.99979 * 179.97438 * 6 4 2 8 8 H 1.07995 * 120.00055 * 0.02562 * 7 6 4 9 9 C 1.38952 * 120.00035 * 179.97438 * 7 6 4 10 10 N 1.31412 * 119.99895 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00064 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47329 * 60.00178 * 11 9 7 13 13 H 1.48506 * 109.47345 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47127 * 299.99952 * 11 9 7 15 15 C 1.50708 * 109.46902 * 120.00043 * 2 1 3 16 16 C 1.38301 * 119.92463 * 234.06081 * 15 2 1 17 17 C 1.38513 * 120.20989 * 179.97438 * 16 15 2 18 18 F 1.35099 * 119.97079 * 179.74475 * 17 16 15 19 19 C 1.38284 * 120.06395 * 0.02562 * 17 16 15 20 20 C 1.39245 * 119.85380 * 359.97438 * 19 17 16 21 21 C 1.48473 * 120.10128 * 180.02562 * 20 19 17 22 22 N 1.34049 * 126.66913 * 179.64722 * 21 20 19 23 23 N 1.28986 * 107.26071 * 179.83172 * 22 21 20 24 24 N 1.28721 * 108.94780 * 0.43686 * 23 22 21 25 25 H 0.97000 * 125.34455 * 179.69324 * 24 23 22 26 26 N 1.28871 * 109.31829 * 359.72117 * 24 23 22 27 27 C 1.38014 * 119.92596 * 54.04145 * 15 2 1 28 28 H 1.08998 * 109.47334 * 300.00167 * 1 2 3 29 29 H 1.09006 * 109.46865 * 60.00203 * 1 2 3 30 30 H 1.09000 * 109.47101 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47297 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47278 * 300.00191 * 3 2 1 33 33 H 1.09002 * 109.46792 * 60.00106 * 3 2 1 34 34 H 0.97003 * 120.00413 * 359.97438 * 6 4 2 35 35 H 0.97006 * 120.00152 * 179.97438 * 10 9 7 36 36 H 1.07996 * 119.89812 * 0.02562 * 16 15 2 37 37 H 1.08003 * 120.07157 * 179.97438 * 19 17 16 38 38 H 1.07995 * 120.03710 * 0.02562 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.6619 -1.7415 -1.1209 6 7 1.7823 -0.2001 -2.4525 7 6 2.2398 -0.8461 -3.5719 8 1 2.8002 -1.7641 -3.4744 9 6 1.9815 -0.3203 -4.8318 10 7 1.2991 0.7965 -4.9504 11 14 2.6042 -1.2008 -6.3570 12 1 2.0232 -2.5663 -6.4122 13 1 2.1998 -0.4410 -7.5672 14 1 4.0853 -1.2949 -6.3042 15 6 2.0323 -0.7105 1.2305 16 6 2.9255 -0.0780 2.0760 17 6 3.3906 -0.7253 3.2089 18 9 4.2670 -0.1049 4.0287 19 6 2.9631 -2.0081 3.4985 20 6 2.0638 -2.6474 2.6490 21 6 1.6007 -4.0245 2.9549 22 7 0.7378 -4.7569 2.2368 23 7 0.6056 -5.8907 2.8376 24 7 1.3377 -5.8905 3.8964 25 1 1.4133 -6.6242 4.5264 26 7 1.9538 -4.7624 3.9884 27 6 1.5995 -1.9906 1.5113 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.2786 0.6243 -2.5401 35 1 1.1191 1.1639 -5.8300 36 1 3.2609 0.9240 1.8528 37 1 3.3259 -2.5131 4.3815 38 1 0.9021 -2.4827 0.8498 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589045264.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:58 Heat of formation + Delta-G solvation = 39.953421 kcal Electronic energy + Delta-G solvation = -26239.142582 eV Core-core repulsion = 22226.102901 eV Total energy + Delta-G solvation = -4013.039680 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.119 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.89691 -45.52502 -41.38595 -39.52939 -36.44857 -35.90642 -35.38048 -34.36005 -33.12898 -31.61985 -30.77968 -28.34263 -27.08586 -25.98272 -25.54383 -24.49924 -23.17245 -22.49896 -20.50498 -20.13205 -19.76946 -18.27296 -18.19886 -17.63703 -17.21063 -17.06361 -16.66370 -16.48931 -16.02021 -15.89440 -15.44792 -15.14340 -14.99519 -14.80486 -14.26337 -13.74818 -13.53299 -13.47144 -13.33137 -13.12400 -13.02799 -12.90900 -12.87882 -12.66287 -12.44613 -12.42546 -12.26580 -12.13722 -11.96824 -11.82616 -11.79262 -11.46307 -10.22396 -9.97219 -9.80662 -9.64466 -8.43849 -5.91656 -0.44754 0.11106 0.13933 1.17456 1.37365 1.40439 1.42766 1.52936 2.08355 2.30401 2.47150 2.56829 2.98364 3.17720 3.23933 3.35007 3.62037 3.81750 4.01196 4.06106 4.10094 4.16886 4.28891 4.32803 4.38460 4.62043 4.79264 4.85166 4.88572 4.94402 4.97011 5.07662 5.19181 5.25413 5.33541 5.44472 5.52282 5.59201 5.76868 6.03415 6.62428 7.05957 7.15402 7.59729 8.14868 8.73038 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.013203 B = 0.003825 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.141375 B = 7318.708803 C = 8636.352949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.031 4.031 3 C -0.142 4.142 4 C 0.450 3.550 5 O -0.626 6.626 6 N -0.563 5.563 7 C -0.333 4.333 8 H 0.077 0.923 9 C -0.008 4.008 10 N -0.917 5.917 11 Si 0.987 3.013 12 H -0.274 1.274 13 H -0.269 1.269 14 H -0.273 1.273 15 C -0.029 4.029 16 C -0.126 4.126 17 C 0.094 3.906 18 F -0.134 7.134 19 C -0.113 4.113 20 C -0.004 4.004 21 C 0.212 3.788 22 N -0.296 5.296 23 N -0.055 5.055 24 N -0.195 5.195 25 H 0.496 0.504 26 N -0.285 5.285 27 C -0.061 4.061 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.397 0.603 35 H 0.278 0.722 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.266 -2.991 19.330 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.035 4.035 3 C -0.199 4.199 4 C 0.237 3.763 5 O -0.513 6.513 6 N -0.199 5.199 7 C -0.463 4.463 8 H 0.095 0.905 9 C -0.208 4.208 10 N -0.557 5.557 11 Si 0.811 3.189 12 H -0.200 1.200 13 H -0.194 1.194 14 H -0.198 1.198 15 C -0.030 4.030 16 C -0.145 4.145 17 C 0.074 3.926 18 F -0.113 7.113 19 C -0.134 4.134 20 C -0.007 4.007 21 C -0.068 4.068 22 N -0.168 5.168 23 N -0.050 5.050 24 N -0.047 5.047 25 H 0.356 0.644 26 N -0.138 5.138 27 C -0.082 4.082 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.232 0.768 35 H 0.087 0.913 36 H 0.181 0.819 37 H 0.179 0.821 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.248 -4.116 19.135 19.612 hybrid contribution 0.503 -0.239 -0.638 0.847 sum -0.745 -4.355 18.497 19.017 Atomic orbital electron populations 1.21890 0.90583 1.02633 1.04049 1.19599 0.98192 0.96542 0.89129 1.22008 1.01476 0.92048 1.04362 1.20539 0.84102 0.86632 0.85028 1.90522 1.46286 1.27457 1.87020 1.41837 1.49191 1.24550 1.04327 1.19613 1.33679 1.08001 0.85015 0.90532 1.25936 0.96793 0.96861 1.01230 1.69652 1.39731 1.20186 1.26164 0.85080 0.78579 0.78118 0.77123 1.19963 1.19389 1.19848 1.19135 0.95914 0.93576 0.94338 1.21465 0.97308 1.02593 0.93176 1.17265 0.92822 0.91734 0.90753 1.91507 1.66418 1.82320 1.71038 1.21080 0.97606 0.93628 1.01075 1.16873 0.99692 0.87631 0.96510 1.23547 0.96296 0.97187 0.89795 1.76174 1.17422 0.98687 1.24471 1.78872 1.13419 1.15740 0.96996 1.47776 1.25536 1.12933 1.18443 0.64426 1.74854 1.20293 0.95527 1.23139 1.20955 0.98818 0.93953 0.94473 0.88508 0.91588 0.93091 0.92289 0.91661 0.87946 0.76803 0.91282 0.81854 0.82119 0.86177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 8.16 71.98 0.59 -3.30 16 2 C -0.03 -1.05 0.72 -53.67 -0.04 -1.09 16 3 C -0.14 -3.84 7.01 71.98 0.50 -3.34 16 4 C 0.45 21.06 6.35 87.66 0.56 21.62 16 5 O -0.63 -34.45 14.90 -3.07 -0.05 -34.50 16 6 N -0.56 -28.39 5.11 -306.98 -1.57 -29.96 16 7 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 9 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 10 N -0.92 -48.79 13.05 21.66 0.28 -48.51 16 11 Si 0.99 43.03 29.55 68.60 2.03 45.05 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 15 C -0.03 -0.93 4.33 -19.90 -0.09 -1.01 16 16 C -0.13 -3.42 8.97 22.35 0.20 -3.22 16 17 C 0.09 2.42 7.29 22.35 0.16 2.58 16 18 F -0.13 -3.29 17.26 44.97 0.78 -2.52 16 19 C -0.11 -2.89 9.68 22.52 0.22 -2.67 16 20 C 0.00 -0.11 5.88 -20.04 -0.12 -0.23 16 21 C 0.21 6.12 7.94 137.39 1.09 7.21 16 22 N -0.30 -9.29 12.23 -52.17 -0.64 -9.92 16 23 N -0.06 -1.36 13.47 37.02 0.50 -0.87 16 24 N -0.20 -3.31 7.90 37.02 0.29 -3.02 16 25 H 0.50 2.71 8.96 -347.54 -3.12 -0.40 16 26 N -0.29 -6.41 12.08 -52.12 -0.63 -7.04 16 27 C -0.06 -2.08 7.79 22.48 0.18 -1.90 16 28 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.07 1.94 7.88 -2.38 -0.02 1.92 16 30 H 0.05 1.59 7.07 -2.39 -0.02 1.57 16 31 H 0.06 1.64 7.23 -2.39 -0.02 1.63 16 32 H 0.06 1.85 7.33 -2.39 -0.02 1.83 16 33 H 0.10 1.98 7.79 -2.39 -0.02 1.96 16 34 H 0.40 18.96 6.79 -92.71 -0.63 18.33 16 35 H 0.28 13.89 8.31 -92.70 -0.77 13.12 16 36 H 0.16 3.69 5.89 -2.91 -0.02 3.67 16 37 H 0.16 3.37 7.88 -2.91 -0.02 3.35 16 38 H 0.12 4.53 7.05 -2.91 -0.02 4.51 16 Total: -1.00 -72.00 333.64 2.95 -69.05 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -2.58 Total: 25.56 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 4.53 Total: -3.34 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -1.76 Total: -99.31 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.05 Total: -34.50 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.78 Total: -2.52 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -72.00 2.95 -69.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589045264.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.008 kcal (2) G-P(sol) polarization free energy of solvation -72.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds