Wall clock time and date at job start Tue Mar 31 2020 12:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47330 * 2 1 4 4 C 1.50706 * 109.49495 * 300.00419 * 3 2 1 5 5 O 1.20830 * 119.99594 * 239.93281 * 4 3 2 6 6 O 1.34222 * 120.00024 * 59.65564 * 4 3 2 7 7 C 1.53037 * 109.52377 * 60.08019 * 3 2 1 8 8 C 1.53041 * 109.54063 * 58.60493 * 7 3 2 9 9 C 1.53193 * 109.30993 * 61.36186 * 8 7 3 10 10 N 1.46921 * 108.77729 * 305.37082 * 9 8 7 11 11 S 1.65604 * 120.62970 * 233.62670 * 10 9 8 12 12 O 1.42110 * 104.27644 * 26.05315 * 11 10 9 13 13 O 1.42104 * 104.27809 * 153.90476 * 11 10 9 14 14 C 1.81402 * 104.45209 * 269.98009 * 11 10 9 15 15 C 1.52998 * 109.47123 * 179.97438 * 14 11 10 16 16 C 1.50696 * 109.47048 * 179.97438 * 15 14 11 17 17 H 1.07997 * 120.00255 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00074 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99914 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00077 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47023 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47393 * 120.00068 * 20 18 16 23 23 H 1.48497 * 109.46881 * 240.00088 * 20 18 16 24 24 C 1.46920 * 118.74356 * 53.60711 * 10 9 8 25 25 H 1.09000 * 109.46706 * 299.99638 * 1 2 3 26 26 H 1.08992 * 109.47067 * 59.99802 * 1 2 3 27 27 H 1.08996 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47392 * 240.00063 * 2 1 3 29 29 H 1.09002 * 109.47585 * 120.00189 * 2 1 3 30 30 H 0.96704 * 116.99844 * 179.97438 * 6 4 3 31 31 H 1.09003 * 109.46132 * 178.62576 * 7 3 2 32 32 H 1.09006 * 109.46191 * 298.58787 * 7 3 2 33 33 H 1.09004 * 109.49545 * 301.41869 * 8 7 3 34 34 H 1.08992 * 109.53129 * 181.33281 * 8 7 3 35 35 H 1.09004 * 109.58669 * 185.58067 * 9 8 7 36 36 H 1.09005 * 109.58373 * 65.15850 * 9 8 7 37 37 H 1.09003 * 109.46365 * 299.99837 * 14 11 10 38 38 H 1.08994 * 109.47020 * 59.99914 * 14 11 10 39 39 H 1.08999 * 109.47234 * 300.00182 * 15 14 11 40 40 H 1.09003 * 109.47348 * 59.99935 * 15 14 11 41 41 H 0.96998 * 120.00431 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.59317 * 186.60582 * 24 10 9 43 43 H 1.09002 * 109.58582 * 66.17398 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5379 2.1535 -1.2303 5 8 2.3233 2.6138 -2.0248 6 8 0.2184 2.2705 -1.4462 7 6 1.5323 2.1645 1.2501 8 6 2.0143 1.4244 2.5000 9 6 3.5459 1.4249 2.5299 10 7 4.0437 0.8638 1.2666 11 16 5.1160 -0.3983 1.2685 12 8 4.8691 -1.0661 2.4984 13 8 4.8942 -1.0484 0.0245 14 6 6.7477 0.3940 1.2907 15 6 7.8365 -0.6808 1.2947 16 6 9.1920 -0.0226 1.3126 17 1 9.2692 1.0545 1.3207 18 6 10.3337 -0.7956 1.3196 19 7 10.2398 -2.1074 1.3102 20 14 12.0140 0.0202 1.3424 21 1 11.8476 1.4959 1.3495 22 1 12.7523 -0.4010 2.5600 23 1 12.7776 -0.3855 0.1353 24 6 3.5720 1.4432 0.0016 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 -0.0556 2.7351 -2.2488 31 1 1.9162 3.1846 1.2615 32 1 0.4425 2.1870 1.2391 33 1 1.6512 0.3969 2.4770 34 1 1.6329 1.9252 3.3898 35 1 3.8953 0.8154 3.3633 36 1 3.9088 2.4464 2.6442 37 1 6.8590 1.0212 0.4062 38 1 6.8410 1.0085 2.1861 39 1 7.7249 -1.3078 2.1794 40 1 7.7434 -1.2958 0.3996 41 1 11.0429 -2.6513 1.3148 42 1 3.9385 0.8459 -0.8332 43 1 3.9369 2.4662 -0.0903 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589606232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:21 Heat of formation + Delta-G solvation = -176.462137 kcal Electronic energy + Delta-G solvation = -26473.801685 eV Core-core repulsion = 22645.696277 eV Total energy + Delta-G solvation = -3828.105409 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.17730 -38.71507 -36.71462 -36.42322 -35.47563 -34.35160 -33.89324 -31.96425 -31.16050 -30.08277 -25.65441 -25.28646 -24.81810 -23.28300 -21.97836 -21.52472 -19.59663 -18.26707 -18.16635 -17.73551 -16.80035 -16.34143 -16.10062 -15.85996 -15.52889 -15.01809 -14.69474 -14.53916 -14.14016 -14.00478 -13.71747 -13.48486 -13.38075 -13.04622 -12.68685 -12.52265 -12.02762 -11.96954 -11.77876 -11.74085 -11.61818 -11.55986 -11.28528 -11.17383 -11.09327 -11.00341 -10.96532 -10.86637 -10.54487 -10.41530 -10.39614 -10.36303 -9.76730 -9.32719 -8.82169 -8.50888 -6.12755 -4.18247 0.69651 1.97665 2.66465 3.04864 3.25561 3.32858 3.36456 4.18964 4.24284 4.37173 4.43506 4.48675 4.57333 4.80062 4.86435 4.96908 5.09590 5.21059 5.22547 5.27789 5.33430 5.45222 5.54499 5.58494 5.64484 5.68054 5.70368 5.74081 5.77460 5.92439 5.99247 6.03756 6.12788 6.23454 6.30072 6.48193 6.58313 7.29101 7.34897 7.65541 7.80622 8.17166 8.85412 9.46651 10.98329 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.003407 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.385590 B = 8215.258168 C = 8533.517032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.117 4.117 3 C -0.059 4.059 4 C 0.493 3.507 5 O -0.510 6.510 6 O -0.507 6.507 7 C -0.106 4.106 8 C -0.132 4.132 9 C 0.113 3.887 10 N -1.004 6.004 11 S 2.587 3.413 12 O -0.962 6.962 13 O -0.960 6.960 14 C -0.588 4.588 15 C 0.027 3.973 16 C -0.519 4.519 17 H 0.062 0.938 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.138 3.862 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.404 0.596 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.265 0.735 42 H 0.104 0.896 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.835 10.058 -0.482 24.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.155 4.155 3 C -0.061 4.061 4 C 0.334 3.666 5 O -0.398 6.398 6 O -0.319 6.319 7 C -0.144 4.144 8 C -0.171 4.171 9 C -0.012 4.012 10 N -0.840 5.840 11 S 2.686 3.314 12 O -0.952 6.952 13 O -0.951 6.951 14 C -0.722 4.722 15 C -0.012 4.012 16 C -0.559 4.559 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.012 3.988 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.262 0.738 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.662 8.891 -0.345 23.418 hybrid contribution 1.183 1.304 -0.582 1.854 sum -20.479 10.196 -0.927 22.896 Atomic orbital electron populations 1.22088 0.94631 1.01845 1.03412 1.21642 0.96888 0.92715 1.04242 1.20913 0.97145 0.96893 0.91186 1.23305 0.79976 0.76302 0.86972 1.90745 1.56824 1.45683 1.46521 1.84655 1.26178 1.72491 1.48551 1.21581 1.01615 0.98798 0.92357 1.21918 0.95838 1.01909 0.97403 1.21484 0.94319 0.99730 0.85674 1.57983 1.60627 1.54605 1.10776 1.05832 0.77022 0.74312 0.74201 1.93533 1.84521 1.71289 1.45863 1.93537 1.84836 1.72041 1.44672 1.30487 1.18519 1.13001 1.10163 1.18976 0.91839 0.91493 0.98856 1.21041 0.89660 0.93189 1.52009 0.91964 1.25072 0.99642 0.94894 0.94889 1.69962 1.29288 1.03934 1.49671 0.86411 0.83551 0.79552 0.77773 1.19626 1.20782 1.20776 1.21229 0.90550 1.00696 0.86361 0.92303 0.90489 0.92682 0.90769 0.89845 0.73753 0.91215 0.90021 0.90519 0.90177 0.88303 0.91281 0.86151 0.86195 0.94864 0.94841 0.92574 0.87779 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.04 37.16 0.34 -1.07 16 2 C -0.12 -1.29 4.49 -26.73 -0.12 -1.41 16 3 C -0.06 -0.62 0.51 -155.54 -0.08 -0.70 16 4 C 0.49 5.15 6.87 36.01 0.25 5.40 16 5 O -0.51 -6.92 16.68 -18.75 -0.31 -7.23 16 6 O -0.51 -3.59 10.22 -39.24 -0.40 -3.99 16 7 C -0.11 -0.87 4.26 -26.69 -0.11 -0.99 16 8 C -0.13 -1.12 5.74 -26.61 -0.15 -1.27 16 9 C 0.11 1.19 6.43 -3.71 -0.02 1.16 16 10 N -1.00 -13.27 2.66 -113.53 -0.30 -13.57 16 11 S 2.59 46.00 5.45 -107.50 -0.59 45.41 16 12 O -0.96 -19.18 16.59 -57.54 -0.95 -20.14 16 13 O -0.96 -19.49 16.59 -57.54 -0.95 -20.45 16 14 C -0.59 -11.33 6.12 37.16 0.23 -11.10 16 15 C 0.03 0.70 4.98 -27.89 -0.14 0.56 16 16 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 20 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.14 1.73 4.46 -3.71 -0.02 1.71 16 25 H 0.06 0.45 6.47 -51.93 -0.34 0.11 16 26 H 0.08 0.63 5.31 -51.93 -0.28 0.36 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.00 5.97 -51.93 -0.31 0.69 16 30 H 0.40 1.28 9.10 45.56 0.41 1.70 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.58 6.47 -51.93 -0.34 0.24 16 33 H 0.08 0.71 6.34 -51.93 -0.33 0.38 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 1.10 6.86 -51.93 -0.36 0.75 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 38 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.10 1.48 6.86 -51.93 -0.36 1.12 16 43 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 LS Contribution 350.46 15.07 5.28 5.28 Total: -1.00 -35.66 350.46 -8.40 -44.07 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.64 Total: 1.06 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -0.25 Total: -20.90 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.43 Total: -39.36 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -2.62 Total: -51.81 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 46.00 SS G_CDS: -0.59 Total: 45.41 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.66 -8.40 -44.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589606232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.395 kcal (2) G-P(sol) polarization free energy of solvation -35.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds