Wall clock time and date at job start Tue Mar 31 2020 12:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47330 * 2 1 4 4 C 1.50706 * 109.49495 * 300.00419 * 3 2 1 5 5 O 1.20830 * 119.99594 * 239.93281 * 4 3 2 6 6 O 1.34222 * 120.00024 * 59.65564 * 4 3 2 7 7 C 1.53037 * 109.52377 * 60.08019 * 3 2 1 8 8 C 1.53041 * 109.54063 * 58.60493 * 7 3 2 9 9 C 1.53193 * 109.30993 * 61.36186 * 8 7 3 10 10 N 1.46921 * 108.77729 * 305.37082 * 9 8 7 11 11 S 1.65604 * 120.62970 * 233.62670 * 10 9 8 12 12 O 1.42110 * 104.27644 * 26.05315 * 11 10 9 13 13 O 1.42104 * 104.27809 * 153.90476 * 11 10 9 14 14 C 1.81402 * 104.45209 * 269.98009 * 11 10 9 15 15 C 1.52998 * 109.47123 * 179.97438 * 14 11 10 16 16 C 1.50696 * 109.47048 * 179.97438 * 15 14 11 17 17 H 1.07997 * 120.00255 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00074 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99914 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00077 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47023 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47393 * 120.00068 * 20 18 16 23 23 H 1.48497 * 109.46881 * 240.00088 * 20 18 16 24 24 C 1.46920 * 118.74356 * 53.60711 * 10 9 8 25 25 H 1.09000 * 109.46706 * 299.99638 * 1 2 3 26 26 H 1.08992 * 109.47067 * 59.99802 * 1 2 3 27 27 H 1.08996 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47392 * 240.00063 * 2 1 3 29 29 H 1.09002 * 109.47585 * 120.00189 * 2 1 3 30 30 H 0.96704 * 116.99844 * 179.97438 * 6 4 3 31 31 H 1.09003 * 109.46132 * 178.62576 * 7 3 2 32 32 H 1.09006 * 109.46191 * 298.58787 * 7 3 2 33 33 H 1.09004 * 109.49545 * 301.41869 * 8 7 3 34 34 H 1.08992 * 109.53129 * 181.33281 * 8 7 3 35 35 H 1.09004 * 109.58669 * 185.58067 * 9 8 7 36 36 H 1.09005 * 109.58373 * 65.15850 * 9 8 7 37 37 H 1.09003 * 109.46365 * 299.99837 * 14 11 10 38 38 H 1.08994 * 109.47020 * 59.99914 * 14 11 10 39 39 H 1.08999 * 109.47234 * 300.00182 * 15 14 11 40 40 H 1.09003 * 109.47348 * 59.99935 * 15 14 11 41 41 H 0.96998 * 120.00431 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.59317 * 186.60582 * 24 10 9 43 43 H 1.09002 * 109.58582 * 66.17398 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5379 2.1535 -1.2303 5 8 2.3233 2.6138 -2.0248 6 8 0.2184 2.2705 -1.4462 7 6 1.5323 2.1645 1.2501 8 6 2.0143 1.4244 2.5000 9 6 3.5459 1.4249 2.5299 10 7 4.0437 0.8638 1.2666 11 16 5.1160 -0.3983 1.2685 12 8 4.8691 -1.0661 2.4984 13 8 4.8942 -1.0484 0.0245 14 6 6.7477 0.3940 1.2907 15 6 7.8365 -0.6808 1.2947 16 6 9.1920 -0.0226 1.3126 17 1 9.2692 1.0545 1.3207 18 6 10.3337 -0.7956 1.3196 19 7 10.2398 -2.1074 1.3102 20 14 12.0140 0.0202 1.3424 21 1 11.8476 1.4959 1.3495 22 1 12.7523 -0.4010 2.5600 23 1 12.7776 -0.3855 0.1353 24 6 3.5720 1.4432 0.0016 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 -0.0556 2.7351 -2.2488 31 1 1.9162 3.1846 1.2615 32 1 0.4425 2.1870 1.2391 33 1 1.6512 0.3969 2.4770 34 1 1.6329 1.9252 3.3898 35 1 3.8953 0.8154 3.3633 36 1 3.9088 2.4464 2.6442 37 1 6.8590 1.0212 0.4062 38 1 6.8410 1.0085 2.1861 39 1 7.7249 -1.3078 2.1794 40 1 7.7434 -1.2958 0.3996 41 1 11.0429 -2.6513 1.3148 42 1 3.9385 0.8459 -0.8332 43 1 3.9369 2.4662 -0.0903 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589606232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:19 Heat of formation + Delta-G solvation = -202.844705 kcal Electronic energy + Delta-G solvation = -26474.945719 eV Core-core repulsion = 22645.696277 eV Total energy + Delta-G solvation = -3829.249443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.98565 -39.55085 -38.26059 -37.18056 -37.03574 -35.91541 -35.26480 -33.14597 -32.77746 -30.89218 -27.62439 -26.10076 -25.76614 -24.11573 -23.52983 -22.66738 -20.60116 -19.49720 -19.03928 -18.91841 -18.49601 -17.46620 -17.22908 -16.98779 -16.85493 -16.54414 -15.88605 -15.83305 -15.17541 -15.02393 -14.85321 -14.56632 -14.42370 -14.23934 -13.92367 -13.74720 -13.43746 -13.22962 -13.20636 -13.06496 -12.96510 -12.80413 -12.72045 -12.44044 -12.28524 -12.16364 -12.11987 -11.98760 -11.85863 -11.76638 -11.61503 -11.35139 -11.23472 -11.09080 -10.67231 -9.94880 -8.27778 -6.42080 -0.76588 1.17545 1.39926 1.40761 1.54131 1.61730 2.11327 2.36897 2.80652 3.05484 3.14384 3.34579 3.59846 3.75331 3.84871 4.03049 4.09839 4.12471 4.20251 4.32856 4.45772 4.52601 4.56384 4.67513 4.72532 4.76306 4.81036 4.91780 4.97676 5.06954 5.12171 5.19408 5.24282 5.24781 5.32722 5.39001 5.56073 5.59862 5.64442 5.66563 6.04253 6.71521 7.00457 7.28264 8.84759 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.003407 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.385590 B = 8215.258168 C = 8533.517032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.060 4.060 4 C 0.502 3.498 5 O -0.547 6.547 6 O -0.493 6.493 7 C -0.100 4.100 8 C -0.129 4.129 9 C 0.100 3.900 10 N -0.991 5.991 11 S 2.611 3.389 12 O -0.985 6.985 13 O -0.991 6.991 14 C -0.590 4.590 15 C 0.020 3.980 16 C -0.540 4.540 17 H 0.075 0.925 18 C -0.004 4.004 19 N -0.934 5.934 20 Si 0.975 3.025 21 H -0.256 1.256 22 H -0.276 1.276 23 H -0.278 1.278 24 C 0.131 3.869 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.424 0.576 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.136 0.864 38 H 0.143 0.857 39 H 0.008 0.992 40 H 0.004 0.996 41 H 0.268 0.732 42 H 0.080 0.920 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.308 12.909 0.216 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.063 4.063 4 C 0.345 3.655 5 O -0.437 6.437 6 O -0.307 6.307 7 C -0.138 4.138 8 C -0.168 4.168 9 C -0.024 4.024 10 N -0.830 5.830 11 S 2.709 3.291 12 O -0.976 6.976 13 O -0.982 6.982 14 C -0.722 4.722 15 C -0.018 4.018 16 C -0.579 4.579 17 H 0.093 0.907 18 C -0.202 4.202 19 N -0.573 5.573 20 Si 0.798 3.202 21 H -0.180 1.180 22 H -0.201 1.201 23 H -0.204 1.204 24 C 0.005 3.995 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.286 0.714 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.154 0.846 38 H 0.161 0.839 39 H 0.026 0.974 40 H 0.022 0.978 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.154 11.752 0.354 25.968 hybrid contribution 1.509 0.421 -0.818 1.767 sum -21.645 12.173 -0.463 24.838 Atomic orbital electron populations 1.22057 0.92497 1.02298 1.04474 1.21637 0.98763 0.92870 1.02529 1.20883 0.95528 0.96961 0.92910 1.23151 0.80624 0.75447 0.86260 1.90742 1.57943 1.47438 1.47613 1.84581 1.24039 1.72304 1.49736 1.21622 1.02750 0.98905 0.90491 1.21948 0.93971 1.01924 0.98955 1.21887 0.96074 1.00789 0.83637 1.57544 1.59130 1.53817 1.12492 1.04796 0.76715 0.74665 0.72929 1.93494 1.84763 1.72531 1.46762 1.93493 1.85140 1.73513 1.46013 1.30417 1.18005 1.11645 1.12134 1.18824 0.93961 0.92776 0.96284 1.21539 0.90765 0.93993 1.51557 0.90701 1.26131 1.04344 0.95453 0.94302 1.70105 1.30663 1.05731 1.50847 0.85249 0.77882 0.79145 0.77882 1.17973 1.20135 1.20369 1.21345 0.92471 1.00703 0.84947 0.90655 0.89873 0.92670 0.93049 0.91155 0.71383 0.89829 0.88080 0.91551 0.87026 0.89155 0.88408 0.84553 0.83863 0.97381 0.97755 0.92336 0.90183 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.04 71.98 0.65 -1.72 16 2 C -0.12 -2.57 4.49 30.59 0.14 -2.43 16 3 C -0.06 -1.16 0.51 -52.85 -0.03 -1.19 16 4 C 0.50 9.56 6.87 71.24 0.49 10.05 16 5 O -0.55 -14.27 16.68 21.95 0.37 -13.90 16 6 O -0.49 -5.52 10.22 -51.34 -0.52 -6.04 16 7 C -0.10 -1.30 4.26 30.62 0.13 -1.16 16 8 C -0.13 -1.79 5.74 30.67 0.18 -1.61 16 9 C 0.10 1.87 6.43 86.36 0.56 2.43 16 10 N -0.99 -25.43 2.66 -513.08 -1.36 -26.80 16 11 S 2.61 95.32 5.45 -56.49 -0.31 95.02 16 12 O -0.99 -40.34 16.59 -127.65 -2.12 -42.46 16 13 O -0.99 -42.25 16.59 -127.65 -2.12 -44.37 16 14 C -0.59 -23.02 6.12 71.98 0.44 -22.58 16 15 C 0.02 1.09 4.98 29.85 0.15 1.24 16 16 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 17 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 18 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 19 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 20 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 24 C 0.13 3.20 4.46 86.36 0.39 3.58 16 25 H 0.07 0.90 6.47 -2.39 -0.02 0.88 16 26 H 0.08 1.15 5.31 -2.39 -0.01 1.14 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.68 5.97 -2.39 -0.01 1.66 16 30 H 0.42 1.38 9.10 -74.05 -0.67 0.71 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 0.97 6.47 -2.38 -0.02 0.95 16 33 H 0.07 1.09 6.34 -2.39 -0.02 1.07 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 1.88 6.86 -2.38 -0.02 1.87 16 36 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.14 4.81 8.14 -2.39 -0.02 4.79 16 38 H 0.14 4.82 8.14 -2.39 -0.02 4.80 16 39 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.08 2.35 6.86 -2.39 -0.02 2.33 16 43 H 0.09 2.01 7.96 -2.39 -0.02 1.99 16 Total: -1.00 -80.03 350.46 0.38 -79.65 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.35 Total: 13.59 kcal Atomic # 6 Polarization: -47.13 SS G_CDS: 3.78 Total: -43.35 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -1.08 Total: -83.88 kcal Atomic # 8 Polarization: -102.38 SS G_CDS: -4.39 Total: -106.77 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 95.32 SS G_CDS: -0.31 Total: 95.02 kcal Total: -80.03 0.38 -79.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589606232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.196 kcal (2) G-P(sol) polarization free energy of solvation -80.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds