Wall clock time and date at job start Tue Mar 31 2020 13:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21567 * 119.99993 * 359.97438 * 14 13 3 16 16 C 1.47748 * 119.99693 * 180.02562 * 14 13 3 17 17 C 1.39726 * 120.06017 * 359.72234 * 16 14 13 18 18 C 1.37880 * 120.11667 * 179.78854 * 17 16 14 19 19 C 1.38478 * 120.24480 * 0.46608 * 18 17 16 20 20 F 1.35102 * 119.94083 * 179.76332 * 19 18 17 21 21 C 1.39671 * 120.11919 * 359.78479 * 19 18 17 22 22 C 1.48451 * 120.05899 * 179.97438 * 21 19 18 23 23 N 1.34054 * 126.67403 * 179.71042 * 22 21 19 24 24 N 1.28981 * 107.27096 * 179.87005 * 23 22 21 25 25 N 1.28738 * 108.94170 * 0.40056 * 24 23 22 26 26 H 0.97001 * 125.33975 * 179.76964 * 25 24 23 27 27 N 1.28873 * 109.31741 * 359.74164 * 25 24 23 28 28 C 1.38963 * 119.87733 * 359.97438 * 21 19 18 29 29 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 30 30 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 32 32 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 33 33 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 34 34 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 36 36 H 1.08001 * 119.94323 * 0.02562 * 17 16 14 37 37 H 1.08003 * 119.87808 * 180.20782 * 18 17 16 38 38 H 1.08002 * 120.11351 * 179.97438 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3411 2.6325 0.4320 16 6 0.0445 3.3252 2.6294 17 6 0.9340 3.3583 3.7065 18 6 0.5723 3.9786 4.8836 19 6 -0.6767 4.5634 5.0087 20 9 -1.0265 5.1654 6.1665 21 6 -1.5756 4.5317 3.9402 22 6 -2.9144 5.1586 4.0760 23 7 -3.8728 5.2104 3.1401 24 7 -4.8768 5.8358 3.6544 25 7 -4.5820 6.1801 4.8594 26 1 -5.1657 6.6659 5.4629 27 7 -3.3899 5.7775 5.1382 28 6 -1.2145 3.9122 2.7499 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.8770 0.4827 -2.1133 35 1 2.2720 2.1230 1.9979 36 1 1.9079 2.9005 3.6156 37 1 1.2641 4.0048 5.7126 38 1 -1.9068 3.8851 1.9214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590419224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:08 Heat of formation + Delta-G solvation = 75.941325 kcal Electronic energy + Delta-G solvation = -25888.515260 eV Core-core repulsion = 21877.036132 eV Total energy + Delta-G solvation = -4011.479128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.16422 -44.70735 -40.05527 -38.27999 -35.38329 -34.72558 -33.93949 -32.51746 -31.79388 -31.13992 -30.33342 -27.53190 -25.14451 -24.85960 -23.71978 -22.54590 -22.40507 -20.75950 -19.80327 -19.42705 -18.20137 -17.57535 -17.42252 -16.70652 -16.29737 -15.85946 -15.71424 -15.20226 -14.86868 -14.46505 -14.38937 -14.01168 -13.59674 -13.33790 -13.18613 -12.84182 -12.76373 -12.60193 -12.31559 -11.94987 -11.80636 -11.61314 -11.48748 -11.30875 -11.23359 -11.08823 -10.92769 -10.64308 -9.94725 -9.63933 -9.31197 -9.24895 -9.23094 -8.89924 -8.77975 -8.13552 -6.23608 -4.26648 0.26029 0.71011 0.92315 1.95739 1.96348 2.95492 3.22732 3.28008 3.35255 3.39951 3.65982 3.80806 3.84049 4.00296 4.29880 4.48113 4.70891 4.86337 4.98695 5.10006 5.10898 5.20067 5.47942 5.65226 5.76947 5.90438 5.96068 6.01877 6.05071 6.09707 6.17353 6.43328 6.64323 6.69163 6.81370 6.94285 7.20114 7.25809 7.46576 7.87316 8.08280 8.44623 8.70745 8.82667 9.36825 10.88272 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.023801 B = 0.003038 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.141348 B = 9213.002191 C =10005.240299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.259 1.259 12 H -0.294 1.294 13 N -0.692 5.692 14 C 0.546 3.454 15 O -0.538 6.538 16 C -0.134 4.134 17 C -0.037 4.037 18 C -0.162 4.162 19 C 0.152 3.848 20 F -0.120 7.120 21 C -0.066 4.066 22 C 0.220 3.780 23 N -0.259 5.259 24 N -0.048 5.048 25 N -0.229 5.229 26 H 0.476 0.524 27 N -0.283 5.283 28 C 0.007 3.993 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.268 0.732 35 H 0.394 0.606 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.727 8.003 15.830 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.183 1.183 12 H -0.222 1.222 13 N -0.340 5.340 14 C 0.331 3.669 15 O -0.417 6.417 16 C -0.138 4.138 17 C -0.057 4.057 18 C -0.180 4.180 19 C 0.130 3.870 20 F -0.098 7.098 21 C -0.070 4.070 22 C -0.060 4.060 23 N -0.132 5.132 24 N -0.043 5.043 25 N -0.075 5.075 26 H 0.330 0.670 27 N -0.135 5.135 28 C -0.014 4.014 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.229 0.771 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.714 8.120 14.848 23.094 hybrid contribution -0.068 -0.160 0.466 0.498 sum -15.782 7.960 15.314 23.387 Atomic orbital electron populations 1.21889 0.96853 0.99171 1.02343 1.22297 0.94432 0.99809 1.01232 1.19212 0.95750 0.88574 0.82543 0.92997 1.21022 0.88482 1.39997 1.07958 0.90134 1.24825 0.94863 0.95090 0.97659 1.69863 1.08706 1.44383 1.29831 0.86915 0.81027 0.79984 0.80908 1.20207 1.18334 1.22168 1.46121 1.14377 1.55353 1.18162 1.17952 0.82994 0.79350 0.86612 1.90780 1.51452 1.59822 1.39640 1.20234 0.95005 1.02687 0.95832 1.21489 0.99333 0.93971 0.90871 1.21021 0.95215 1.01571 1.00227 1.17771 0.93333 0.94460 0.81402 1.91568 1.92143 1.80352 1.45705 1.17111 0.88685 1.05664 0.95532 1.23343 0.96628 0.99515 0.86511 1.76159 0.97244 1.15003 1.24767 1.78939 1.20509 1.10674 0.94212 1.47776 1.10467 1.37648 1.11565 0.67021 1.75092 0.96616 1.16273 1.25505 1.21209 0.95289 0.89609 0.95340 0.92754 0.94900 0.92900 0.92676 0.92206 0.92238 0.77135 0.83487 0.83238 0.82299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.51 37.16 0.32 -2.51 16 2 C -0.14 -2.96 5.11 -26.73 -0.14 -3.10 16 3 C 0.24 5.47 1.83 -69.08 -0.13 5.34 16 4 H 0.05 1.30 6.63 -51.93 -0.34 0.96 16 5 C -0.54 -13.88 9.31 -34.44 -0.32 -14.20 16 6 H 0.08 2.17 7.98 -52.49 -0.42 1.76 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 8 N -0.89 -25.77 13.96 55.43 0.77 -24.99 16 9 Si 0.88 21.22 24.41 -169.99 -4.15 17.07 16 10 H -0.28 -6.42 6.83 56.52 0.39 -6.04 16 11 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 N -0.69 -12.68 4.97 -55.91 -0.28 -12.96 16 14 C 0.55 9.62 6.34 -12.37 -0.08 9.54 16 15 O -0.54 -11.19 13.47 5.31 0.07 -11.11 16 16 C -0.13 -1.83 5.87 -105.01 -0.62 -2.45 16 17 C -0.04 -0.39 9.53 -39.16 -0.37 -0.77 16 18 C -0.16 -1.52 10.00 -39.62 -0.40 -1.92 16 19 C 0.15 1.69 7.28 -38.96 -0.28 1.41 16 20 F -0.12 -1.35 15.81 2.25 0.04 -1.31 16 21 C -0.07 -0.81 5.88 -104.88 -0.62 -1.43 16 22 C 0.22 2.78 7.92 -156.30 -1.24 1.54 16 23 N -0.26 -3.44 12.23 32.15 0.39 -3.04 16 24 N -0.05 -0.52 13.47 60.35 0.81 0.29 16 25 N -0.23 -1.82 7.90 60.35 0.48 -1.34 16 26 H 0.48 1.31 8.96 -340.36 -3.05 -1.74 16 27 N -0.28 -3.08 11.08 32.17 0.36 -2.72 16 28 C 0.01 0.09 9.24 -38.87 -0.36 -0.27 16 29 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 1.00 5.64 -51.93 -0.29 0.71 16 32 H 0.06 1.25 3.22 -51.93 -0.17 1.08 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.39 6.13 6.56 -40.82 -0.27 5.87 16 36 H 0.15 1.29 6.39 -52.49 -0.34 0.95 16 37 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.16 2.28 7.47 -52.49 -0.39 1.89 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -32.81 323.38 -7.09 -39.90 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.13 Total: 2.10 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -4.33 Total: -6.75 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 2.53 Total: -44.77 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.11 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.15 Total: 17.07 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.81 -7.09 -39.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.838 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds