Wall clock time and date at job start Tue Mar 31 2020 13:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21567 * 119.99993 * 359.97438 * 14 13 3 16 16 C 1.47748 * 119.99693 * 180.02562 * 14 13 3 17 17 C 1.39726 * 120.06017 * 359.72234 * 16 14 13 18 18 C 1.37880 * 120.11667 * 179.78854 * 17 16 14 19 19 C 1.38478 * 120.24480 * 0.46608 * 18 17 16 20 20 F 1.35102 * 119.94083 * 179.76332 * 19 18 17 21 21 C 1.39671 * 120.11919 * 359.78479 * 19 18 17 22 22 C 1.48451 * 120.05899 * 179.97438 * 21 19 18 23 23 N 1.34054 * 126.67403 * 179.71042 * 22 21 19 24 24 N 1.28981 * 107.27096 * 179.87005 * 23 22 21 25 25 N 1.28738 * 108.94170 * 0.40056 * 24 23 22 26 26 H 0.97001 * 125.33975 * 179.76964 * 25 24 23 27 27 N 1.28873 * 109.31741 * 359.74164 * 25 24 23 28 28 C 1.38963 * 119.87733 * 359.97438 * 21 19 18 29 29 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 30 30 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 32 32 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 33 33 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 34 34 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 36 36 H 1.08001 * 119.94323 * 0.02562 * 17 16 14 37 37 H 1.08003 * 119.87808 * 180.20782 * 18 17 16 38 38 H 1.08002 * 120.11351 * 179.97438 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3411 2.6325 0.4320 16 6 0.0445 3.3252 2.6294 17 6 0.9340 3.3583 3.7065 18 6 0.5723 3.9786 4.8836 19 6 -0.6767 4.5634 5.0087 20 9 -1.0265 5.1654 6.1665 21 6 -1.5756 4.5317 3.9402 22 6 -2.9144 5.1586 4.0760 23 7 -3.8728 5.2104 3.1401 24 7 -4.8768 5.8358 3.6544 25 7 -4.5820 6.1801 4.8594 26 1 -5.1657 6.6659 5.4629 27 7 -3.3899 5.7775 5.1382 28 6 -1.2145 3.9122 2.7499 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.8770 0.4827 -2.1133 35 1 2.2720 2.1230 1.9979 36 1 1.9079 2.9005 3.6156 37 1 1.2641 4.0048 5.7126 38 1 -1.9068 3.8851 1.9214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590419224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:07 Heat of formation + Delta-G solvation = 52.041695 kcal Electronic energy + Delta-G solvation = -25889.551626 eV Core-core repulsion = 21877.036132 eV Total energy + Delta-G solvation = -4012.515493 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.119 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.04611 -45.55218 -41.30556 -39.47348 -37.06482 -35.59514 -34.86292 -34.34872 -33.37584 -32.05506 -31.45044 -29.33653 -26.03275 -25.78453 -25.06289 -24.16035 -23.30201 -22.20643 -21.25500 -20.35055 -19.45400 -18.73959 -18.26248 -17.95995 -17.75548 -17.27218 -16.73570 -16.32446 -16.32191 -16.04441 -15.32175 -15.14300 -14.94389 -14.86271 -14.27712 -14.18980 -13.94040 -13.81330 -13.60961 -13.44978 -13.42602 -12.92877 -12.73168 -12.49336 -12.39006 -12.35485 -12.20256 -12.09214 -11.81775 -11.36023 -11.19298 -10.86608 -10.80182 -10.12486 -9.92309 -9.68136 -8.34328 -6.39135 -0.65107 -0.23897 0.07759 1.04303 1.30422 1.33140 1.39392 1.48493 1.83596 2.28480 2.30037 2.50954 2.67944 2.86666 3.02324 3.07903 3.61961 3.75732 3.83754 4.08062 4.10367 4.28885 4.33412 4.36912 4.48756 4.59374 4.78310 4.84844 4.89238 4.98866 5.06060 5.11618 5.17727 5.27945 5.43835 5.52580 5.56355 5.58016 5.66830 6.17689 6.63054 6.86801 7.01467 7.22932 7.43588 8.80462 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.023801 B = 0.003038 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.141348 B = 9213.002191 C =10005.240299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.138 4.138 3 C 0.249 3.751 4 H 0.024 0.976 5 C -0.530 4.530 6 H 0.063 0.937 7 C 0.032 3.968 8 N -0.933 5.933 9 Si 0.931 3.069 10 H -0.260 1.260 11 H -0.260 1.260 12 H -0.297 1.297 13 N -0.690 5.690 14 C 0.548 3.452 15 O -0.575 6.575 16 C -0.147 4.147 17 C -0.025 4.025 18 C -0.142 4.142 19 C 0.157 3.843 20 F -0.118 7.118 21 C -0.072 4.072 22 C 0.205 3.795 23 N -0.292 5.292 24 N -0.053 5.053 25 N -0.197 5.197 26 H 0.496 0.504 27 N -0.283 5.283 28 C 0.002 3.998 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.269 0.731 35 H 0.408 0.592 36 H 0.169 0.831 37 H 0.188 0.812 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.530 8.044 18.158 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 C 0.144 3.856 4 H 0.042 0.958 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.168 4.168 8 N -0.572 5.572 9 Si 0.759 3.241 10 H -0.186 1.186 11 H -0.185 1.185 12 H -0.224 1.224 13 N -0.340 5.340 14 C 0.336 3.664 15 O -0.456 6.456 16 C -0.151 4.151 17 C -0.044 4.044 18 C -0.160 4.160 19 C 0.135 3.865 20 F -0.096 7.096 21 C -0.076 4.076 22 C -0.075 4.075 23 N -0.164 5.164 24 N -0.047 5.047 25 N -0.048 5.048 26 H 0.356 0.644 27 N -0.136 5.136 28 C -0.020 4.020 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.245 0.755 36 H 0.186 0.814 37 H 0.205 0.795 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.545 8.176 17.219 25.240 hybrid contribution 0.113 -0.030 -0.096 0.151 sum -16.432 8.146 17.123 25.091 Atomic orbital electron populations 1.21780 0.95363 1.00547 1.01636 1.22220 0.95695 0.98459 1.01250 1.18831 0.93372 0.89676 0.83675 0.95792 1.21275 0.90164 1.38354 1.06996 0.91921 1.25486 0.95613 0.95957 0.99749 1.69965 1.10184 1.46224 1.30806 0.86116 0.79437 0.80044 0.78506 1.18596 1.18472 1.22421 1.45877 1.15250 1.55563 1.17276 1.18432 0.82003 0.78460 0.87549 1.90760 1.52376 1.61063 1.41400 1.19850 0.96009 1.04208 0.95009 1.21678 0.99377 0.93274 0.90083 1.21338 0.94760 0.99391 1.00515 1.17901 0.93587 0.94045 0.80916 1.91576 1.92215 1.80293 1.45499 1.17124 0.89116 1.05796 0.95587 1.23449 0.96894 1.00262 0.86868 1.76151 0.98019 1.16331 1.25882 1.78875 1.20052 1.10789 0.95028 1.47833 1.09862 1.36002 1.11092 0.64445 1.75042 0.97398 1.16162 1.24991 1.20995 0.95064 0.90431 0.95466 0.94504 0.92380 0.92638 0.93864 0.90867 0.92161 0.75463 0.81356 0.79519 0.84125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 8.51 71.98 0.61 -4.51 16 2 C -0.14 -5.71 5.11 30.60 0.16 -5.55 16 3 C 0.25 11.21 1.83 44.24 0.08 11.29 16 4 H 0.02 1.23 6.63 -2.39 -0.02 1.21 16 5 C -0.53 -27.55 9.31 25.60 0.24 -27.32 16 6 H 0.06 3.41 7.98 -2.91 -0.02 3.39 16 7 C 0.03 1.75 5.45 84.65 0.46 2.21 16 8 N -0.93 -54.65 13.96 21.45 0.30 -54.35 16 9 Si 0.93 43.93 24.41 68.60 1.67 45.61 16 10 H -0.26 -11.56 6.83 99.48 0.68 -10.88 16 11 H -0.26 -12.22 6.53 99.48 0.65 -11.57 16 12 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 13 N -0.69 -24.83 4.97 -449.06 -2.23 -27.06 16 14 C 0.55 19.17 6.34 86.76 0.55 19.72 16 15 O -0.57 -24.34 13.47 -3.93 -0.05 -24.39 16 16 C -0.15 -3.88 5.87 -20.12 -0.12 -3.99 16 17 C -0.02 -0.45 9.53 22.54 0.21 -0.24 16 18 C -0.14 -2.12 10.00 22.24 0.22 -1.90 16 19 C 0.16 3.07 7.28 22.67 0.17 3.24 16 20 F -0.12 -2.31 15.81 44.97 0.71 -1.60 16 21 C -0.07 -1.70 5.88 -20.03 -0.12 -1.82 16 22 C 0.21 5.02 7.92 137.37 1.09 6.10 16 23 N -0.29 -7.70 12.23 -52.18 -0.64 -8.34 16 24 N -0.05 -1.09 13.47 37.02 0.50 -0.59 16 25 N -0.20 -2.78 7.90 37.02 0.29 -2.49 16 26 H 0.50 1.61 8.96 -347.53 -3.12 -1.51 16 27 N -0.28 -5.66 11.08 -52.13 -0.58 -6.24 16 28 C 0.00 0.05 9.24 22.73 0.21 0.26 16 29 H 0.04 1.50 7.84 -2.39 -0.02 1.48 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.05 2.04 5.64 -2.39 -0.01 2.03 16 32 H 0.04 1.89 3.22 -2.38 -0.01 1.89 16 33 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 34 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.41 12.11 6.56 -92.71 -0.61 11.50 16 36 H 0.17 2.35 6.39 -2.91 -0.02 2.33 16 37 H 0.19 1.48 8.06 -2.91 -0.02 1.45 16 38 H 0.14 4.23 7.47 -2.91 -0.02 4.21 16 Total: -1.00 -72.05 323.38 1.10 -70.95 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -2.64 Total: 11.04 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 3.76 Total: -2.53 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -2.36 Total: -99.08 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.05 Total: -24.39 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.71 Total: -1.60 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.67 Total: 45.61 kcal Total: -72.05 1.10 -70.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.988 kcal (2) G-P(sol) polarization free energy of solvation -72.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds